Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21555

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21554 and SM_b21555 are separated by 499 nucleotidesSM_b21555 and SM_b21556 are separated by 80 nucleotides SM_b21554: SM_b21554 - hypothetical protein, at 1,092,199 to 1,092,741 _b21554 SM_b21555: SM_b21555 - potassium-efflux protein, at 1,093,241 to 1,095,022 _b21555 SM_b21556: SM_b21556 - aldehyde or xanthine dehydrogenase, at 1,095,103 to 1,097,328 _b21556 Position (kb) 1093 1094 1095 1096Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1092.251 kb on + strandat 1092.251 kb on + strandat 1092.252 kb on - strandat 1092.374 kb on + strand, within SM_b21554at 1092.375 kb on - strand, within SM_b21554at 1092.375 kb on - strand, within SM_b21554at 1092.424 kb on + strand, within SM_b21554at 1092.488 kb on + strand, within SM_b21554at 1092.601 kb on + strand, within SM_b21554at 1092.620 kb on + strand, within SM_b21554at 1092.620 kb on + strand, within SM_b21554at 1092.620 kb on + strand, within SM_b21554at 1092.621 kb on - strand, within SM_b21554at 1092.628 kb on - strand, within SM_b21554at 1092.817 kb on + strandat 1092.849 kb on + strandat 1092.850 kb on - strandat 1092.983 kb on - strandat 1093.064 kb on + strandat 1093.065 kb on - strandat 1093.098 kb on - strandat 1093.098 kb on - strandat 1093.098 kb on - strandat 1093.105 kb on - strandat 1093.105 kb on - strandat 1093.204 kb on + strandat 1093.205 kb on - strandat 1093.263 kb on + strandat 1093.264 kb on - strandat 1093.352 kb on + strandat 1093.353 kb on - strandat 1093.527 kb on + strand, within SM_b21555at 1093.527 kb on + strand, within SM_b21555at 1093.720 kb on + strand, within SM_b21555at 1093.720 kb on + strand, within SM_b21555at 1093.721 kb on - strand, within SM_b21555at 1093.721 kb on - strand, within SM_b21555at 1093.721 kb on - strand, within SM_b21555at 1093.831 kb on + strand, within SM_b21555at 1093.832 kb on - strand, within SM_b21555at 1093.862 kb on + strand, within SM_b21555at 1093.863 kb on - strand, within SM_b21555at 1093.863 kb on - strand, within SM_b21555at 1093.955 kb on + strand, within SM_b21555at 1093.955 kb on + strand, within SM_b21555at 1093.956 kb on - strand, within SM_b21555at 1094.156 kb on + strand, within SM_b21555at 1094.157 kb on - strand, within SM_b21555at 1094.157 kb on - strand, within SM_b21555at 1094.157 kb on - strand, within SM_b21555at 1094.168 kb on + strand, within SM_b21555at 1094.195 kb on + strand, within SM_b21555at 1094.196 kb on - strand, within SM_b21555at 1094.196 kb on - strand, within SM_b21555at 1094.196 kb on - strand, within SM_b21555at 1094.289 kb on - strand, within SM_b21555at 1094.358 kb on + strand, within SM_b21555at 1094.358 kb on + strand, within SM_b21555at 1094.597 kb on + strand, within SM_b21555at 1094.597 kb on + strand, within SM_b21555at 1094.597 kb on + strand, within SM_b21555at 1094.598 kb on - strand, within SM_b21555at 1094.598 kb on - strand, within SM_b21555at 1094.600 kb on + strand, within SM_b21555at 1094.951 kb on + strandat 1095.104 kb on + strandat 1095.274 kb on - strandat 1095.306 kb on - strandat 1095.605 kb on + strand, within SM_b21556at 1095.606 kb on - strand, within SM_b21556at 1095.623 kb on + strand, within SM_b21556at 1095.623 kb on + strand, within SM_b21556at 1095.623 kb on + strand, within SM_b21556at 1095.623 kb on + strand, within SM_b21556at 1095.624 kb on - strand, within SM_b21556at 1095.624 kb on - strand, within SM_b21556at 1095.624 kb on - strand, within SM_b21556at 1095.624 kb on - strand, within SM_b21556at 1095.914 kb on + strand, within SM_b21556at 1095.915 kb on - strand, within SM_b21556at 1095.979 kb on + strand, within SM_b21556at 1095.979 kb on + strand, within SM_b21556at 1095.980 kb on - strand, within SM_b21556at 1096.013 kb on + strand, within SM_b21556at 1096.013 kb on + strand, within SM_b21556at 1096.013 kb on + strand, within SM_b21556at 1096.013 kb on + strand, within SM_b21556at 1096.014 kb on - strand, within SM_b21556at 1096.014 kb on - strand, within SM_b21556at 1096.014 kb on - strand, within SM_b21556at 1096.014 kb on - strand, within SM_b21556at 1096.014 kb on - strand, within SM_b21556

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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1,092,251 + +0.3
1,092,251 + -0.9
1,092,252 - +0.7
1,092,374 + SM_b21554 0.32 +0.9
1,092,375 - SM_b21554 0.32 -0.2
1,092,375 - SM_b21554 0.32 -0.2
1,092,424 + SM_b21554 0.41 +0.3
1,092,488 + SM_b21554 0.53 -2.7
1,092,601 + SM_b21554 0.74 +2.1
1,092,620 + SM_b21554 0.78 +1.3
1,092,620 + SM_b21554 0.78 -2.3
1,092,620 + SM_b21554 0.78 -0.5
1,092,621 - SM_b21554 0.78 +3.0
1,092,628 - SM_b21554 0.79 -0.7
1,092,817 + -0.0
1,092,849 + +0.1
1,092,850 - +0.2
1,092,983 - +0.1
1,093,064 + -1.0
1,093,065 - +0.1
1,093,098 - -2.9
1,093,098 - -0.3
1,093,098 - -0.1
1,093,105 - -1.1
1,093,105 - -0.2
1,093,204 + +2.0
1,093,205 - +0.6
1,093,263 + -0.6
1,093,264 - -0.6
1,093,352 + -0.1
1,093,353 - +2.7
1,093,527 + SM_b21555 0.16 +2.2
1,093,527 + SM_b21555 0.16 -0.1
1,093,720 + SM_b21555 0.27 +1.3
1,093,720 + SM_b21555 0.27 +1.4
1,093,721 - SM_b21555 0.27 +2.0
1,093,721 - SM_b21555 0.27 -3.5
1,093,721 - SM_b21555 0.27 -2.5
1,093,831 + SM_b21555 0.33 +0.8
1,093,832 - SM_b21555 0.33 +4.5
1,093,862 + SM_b21555 0.35 -0.3
1,093,863 - SM_b21555 0.35 -1.0
1,093,863 - SM_b21555 0.35 -0.7
1,093,955 + SM_b21555 0.40 -0.5
1,093,955 + SM_b21555 0.40 -1.6
1,093,956 - SM_b21555 0.40 -0.3
1,094,156 + SM_b21555 0.51 +0.1
1,094,157 - SM_b21555 0.51 +0.2
1,094,157 - SM_b21555 0.51 +1.7
1,094,157 - SM_b21555 0.51 +2.0
1,094,168 + SM_b21555 0.52 +1.3
1,094,195 + SM_b21555 0.54 +2.5
1,094,196 - SM_b21555 0.54 -0.3
1,094,196 - SM_b21555 0.54 +0.3
1,094,196 - SM_b21555 0.54 +0.2
1,094,289 - SM_b21555 0.59 +0.2
1,094,358 + SM_b21555 0.63 +0.4
1,094,358 + SM_b21555 0.63 -1.2
1,094,597 + SM_b21555 0.76 -2.8
1,094,597 + SM_b21555 0.76 -2.0
1,094,597 + SM_b21555 0.76 +0.8
1,094,598 - SM_b21555 0.76 -2.7
1,094,598 - SM_b21555 0.76 -0.5
1,094,600 + SM_b21555 0.76 +0.0
1,094,951 + +0.1
1,095,104 + +0.8
1,095,274 - +0.7
1,095,306 - -1.8
1,095,605 + SM_b21556 0.23 +0.2
1,095,606 - SM_b21556 0.23 +0.2
1,095,623 + SM_b21556 0.23 +1.1
1,095,623 + SM_b21556 0.23 -1.6
1,095,623 + SM_b21556 0.23 +0.0
1,095,623 + SM_b21556 0.23 +2.2
1,095,624 - SM_b21556 0.23 -0.0
1,095,624 - SM_b21556 0.23 +1.1
1,095,624 - SM_b21556 0.23 -0.7
1,095,624 - SM_b21556 0.23 -3.6
1,095,914 + SM_b21556 0.36 -1.7
1,095,915 - SM_b21556 0.36 -1.4
1,095,979 + SM_b21556 0.39 -3.1
1,095,979 + SM_b21556 0.39 -2.0
1,095,980 - SM_b21556 0.39 +0.2
1,096,013 + SM_b21556 0.41 -1.7
1,096,013 + SM_b21556 0.41 +1.6
1,096,013 + SM_b21556 0.41 +0.7
1,096,013 + SM_b21556 0.41 +1.5
1,096,014 - SM_b21556 0.41 -2.5
1,096,014 - SM_b21556 0.41 -0.3
1,096,014 - SM_b21556 0.41 -0.1
1,096,014 - SM_b21556 0.41 -0.4
1,096,014 - SM_b21556 0.41 -1.0

Or see this region's nucleotide sequence