Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21385 and SM_b21525 are separated by 45 nucleotides SM_b21525 and SM_b21526 are separated by 156 nucleotides
SM_b21385: SM_b21385 - AraC family transcriptional regulator, at 1,048,341 to 1,049,276
_b21385
SM_b21525: SM_b21525 - transcriptional regulator, at 1,049,322 to 1,050,797
_b21525
SM_b21526: SM_b21526 - taurine uptake ABC transporter substrate-binding protein precursor, at 1,050,954 to 1,051,973
_b21526
Position (kb)
1049
1050
1051 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1048.371 kb on + strand at 1048.371 kb on + strand at 1048.371 kb on + strand at 1048.372 kb on - strand at 1048.372 kb on - strand at 1048.412 kb on + strand at 1048.413 kb on - strand at 1048.413 kb on - strand at 1048.463 kb on - strand, within SM_b21385 at 1048.463 kb on - strand, within SM_b21385 at 1048.463 kb on - strand, within SM_b21385 at 1048.473 kb on + strand, within SM_b21385 at 1048.519 kb on + strand, within SM_b21385 at 1048.519 kb on + strand, within SM_b21385 at 1048.520 kb on - strand, within SM_b21385 at 1048.541 kb on - strand, within SM_b21385 at 1048.541 kb on - strand, within SM_b21385 at 1048.545 kb on + strand, within SM_b21385 at 1048.545 kb on + strand, within SM_b21385 at 1048.546 kb on - strand, within SM_b21385 at 1048.623 kb on + strand, within SM_b21385 at 1048.623 kb on + strand, within SM_b21385 at 1048.688 kb on + strand, within SM_b21385 at 1048.688 kb on + strand, within SM_b21385 at 1048.688 kb on + strand, within SM_b21385 at 1048.839 kb on + strand, within SM_b21385 at 1048.840 kb on - strand, within SM_b21385 at 1048.840 kb on - strand, within SM_b21385 at 1048.899 kb on + strand, within SM_b21385 at 1048.899 kb on + strand, within SM_b21385 at 1048.899 kb on + strand, within SM_b21385 at 1048.899 kb on + strand, within SM_b21385 at 1048.900 kb on - strand, within SM_b21385 at 1048.900 kb on - strand, within SM_b21385 at 1048.900 kb on - strand, within SM_b21385 at 1048.945 kb on - strand, within SM_b21385 at 1048.945 kb on - strand, within SM_b21385 at 1049.050 kb on - strand, within SM_b21385 at 1049.136 kb on + strand, within SM_b21385 at 1049.167 kb on - strand, within SM_b21385 at 1049.274 kb on + strand at 1049.274 kb on + strand at 1049.275 kb on - strand at 1049.275 kb on - strand at 1049.323 kb on + strand at 1049.618 kb on - strand, within SM_b21525 at 1049.618 kb on - strand, within SM_b21525 at 1049.618 kb on - strand, within SM_b21525 at 1049.650 kb on + strand, within SM_b21525 at 1049.651 kb on - strand, within SM_b21525 at 1049.651 kb on - strand, within SM_b21525 at 1049.767 kb on + strand, within SM_b21525 at 1049.815 kb on + strand, within SM_b21525 at 1049.815 kb on + strand, within SM_b21525 at 1049.815 kb on + strand, within SM_b21525 at 1049.907 kb on + strand, within SM_b21525 at 1049.908 kb on - strand, within SM_b21525 at 1050.257 kb on + strand, within SM_b21525 at 1050.257 kb on + strand, within SM_b21525 at 1050.258 kb on - strand, within SM_b21525 at 1050.259 kb on + strand, within SM_b21525 at 1050.259 kb on + strand, within SM_b21525 at 1050.259 kb on + strand, within SM_b21525 at 1050.260 kb on - strand, within SM_b21525 at 1050.260 kb on - strand, within SM_b21525 at 1050.260 kb on - strand, within SM_b21525 at 1050.260 kb on - strand, within SM_b21525 at 1050.260 kb on - strand, within SM_b21525 at 1050.391 kb on + strand, within SM_b21525 at 1050.392 kb on - strand, within SM_b21525 at 1050.394 kb on - strand, within SM_b21525 at 1050.394 kb on - strand, within SM_b21525 at 1050.409 kb on + strand, within SM_b21525 at 1050.581 kb on - strand, within SM_b21525 at 1050.581 kb on - strand, within SM_b21525 at 1050.581 kb on - strand, within SM_b21525 at 1050.581 kb on - strand, within SM_b21525 at 1050.581 kb on - strand, within SM_b21525 at 1050.633 kb on - strand, within SM_b21525 at 1050.700 kb on - strand at 1050.700 kb on - strand at 1050.866 kb on + strand at 1050.867 kb on - strand at 1050.867 kb on - strand at 1050.867 kb on - strand at 1050.873 kb on - strand at 1050.902 kb on + strand at 1050.902 kb on + strand at 1051.134 kb on + strand, within SM_b21526 at 1051.136 kb on + strand, within SM_b21526 at 1051.136 kb on + strand, within SM_b21526 at 1051.207 kb on + strand, within SM_b21526 at 1051.207 kb on + strand, within SM_b21526 at 1051.208 kb on - strand, within SM_b21526 at 1051.208 kb on - strand, within SM_b21526 at 1051.420 kb on + strand, within SM_b21526 at 1051.512 kb on + strand, within SM_b21526 at 1051.512 kb on + strand, within SM_b21526 at 1051.513 kb on - strand, within SM_b21526 at 1051.686 kb on + strand, within SM_b21526 at 1051.686 kb on + strand, within SM_b21526 at 1051.779 kb on - strand, within SM_b21526
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 1,048,371 + +0.0 1,048,371 + +1.8 1,048,371 + -2.2 1,048,372 - -3.2 1,048,372 - -0.9 1,048,412 + -0.7 1,048,413 - +0.4 1,048,413 - -1.0 1,048,463 - SM_b21385 0.13 +0.0 1,048,463 - SM_b21385 0.13 +2.2 1,048,463 - SM_b21385 0.13 -0.2 1,048,473 + SM_b21385 0.14 +1.4 1,048,519 + SM_b21385 0.19 -0.5 1,048,519 + SM_b21385 0.19 -0.3 1,048,520 - SM_b21385 0.19 +0.2 1,048,541 - SM_b21385 0.21 +0.3 1,048,541 - SM_b21385 0.21 -0.4 1,048,545 + SM_b21385 0.22 -1.8 1,048,545 + SM_b21385 0.22 -0.2 1,048,546 - SM_b21385 0.22 +0.4 1,048,623 + SM_b21385 0.30 -0.3 1,048,623 + SM_b21385 0.30 +1.3 1,048,688 + SM_b21385 0.37 -0.1 1,048,688 + SM_b21385 0.37 +0.4 1,048,688 + SM_b21385 0.37 +0.0 1,048,839 + SM_b21385 0.53 +0.4 1,048,840 - SM_b21385 0.53 -1.3 1,048,840 - SM_b21385 0.53 +0.9 1,048,899 + SM_b21385 0.60 -1.2 1,048,899 + SM_b21385 0.60 -0.3 1,048,899 + SM_b21385 0.60 -0.8 1,048,899 + SM_b21385 0.60 +0.3 1,048,900 - SM_b21385 0.60 -1.3 1,048,900 - SM_b21385 0.60 -0.8 1,048,900 - SM_b21385 0.60 +2.1 1,048,945 - SM_b21385 0.65 +0.3 1,048,945 - SM_b21385 0.65 -0.6 1,049,050 - SM_b21385 0.76 +0.2 1,049,136 + SM_b21385 0.85 +0.1 1,049,167 - SM_b21385 0.88 +1.2 1,049,274 + +1.0 1,049,274 + -2.4 1,049,275 - +0.2 1,049,275 - +2.9 1,049,323 + +0.1 1,049,618 - SM_b21525 0.20 -0.3 1,049,618 - SM_b21525 0.20 +0.7 1,049,618 - SM_b21525 0.20 +0.7 1,049,650 + SM_b21525 0.22 +0.6 1,049,651 - SM_b21525 0.22 -0.5 1,049,651 - SM_b21525 0.22 +0.3 1,049,767 + SM_b21525 0.30 -1.7 1,049,815 + SM_b21525 0.33 -0.9 1,049,815 + SM_b21525 0.33 -0.6 1,049,815 + SM_b21525 0.33 -0.3 1,049,907 + SM_b21525 0.40 +0.4 1,049,908 - SM_b21525 0.40 -0.2 1,050,257 + SM_b21525 0.63 +2.4 1,050,257 + SM_b21525 0.63 -0.6 1,050,258 - SM_b21525 0.63 +0.6 1,050,259 + SM_b21525 0.63 -0.6 1,050,259 + SM_b21525 0.63 +1.0 1,050,259 + SM_b21525 0.63 -0.1 1,050,260 - SM_b21525 0.64 +0.4 1,050,260 - SM_b21525 0.64 +1.3 1,050,260 - SM_b21525 0.64 +0.2 1,050,260 - SM_b21525 0.64 +0.5 1,050,260 - SM_b21525 0.64 -1.4 1,050,391 + SM_b21525 0.72 -1.6 1,050,392 - SM_b21525 0.72 +0.6 1,050,394 - SM_b21525 0.73 +1.4 1,050,394 - SM_b21525 0.73 -0.3 1,050,409 + SM_b21525 0.74 +0.7 1,050,581 - SM_b21525 0.85 +1.7 1,050,581 - SM_b21525 0.85 +1.0 1,050,581 - SM_b21525 0.85 +0.8 1,050,581 - SM_b21525 0.85 -3.9 1,050,581 - SM_b21525 0.85 -0.5 1,050,633 - SM_b21525 0.89 +0.2 1,050,700 - +1.0 1,050,700 - +0.1 1,050,866 + +0.6 1,050,867 - -0.8 1,050,867 - +1.6 1,050,867 - -2.3 1,050,873 - +0.6 1,050,902 + -0.3 1,050,902 + +1.2 1,051,134 + SM_b21526 0.18 +2.0 1,051,136 + SM_b21526 0.18 -2.5 1,051,136 + SM_b21526 0.18 -0.1 1,051,207 + SM_b21526 0.25 +0.9 1,051,207 + SM_b21526 0.25 -0.8 1,051,208 - SM_b21526 0.25 -2.9 1,051,208 - SM_b21526 0.25 +3.3 1,051,420 + SM_b21526 0.46 -1.1 1,051,512 + SM_b21526 0.55 -0.5 1,051,512 + SM_b21526 0.55 +0.6 1,051,513 - SM_b21526 0.55 +0.1 1,051,686 + SM_b21526 0.72 +0.4 1,051,686 + SM_b21526 0.72 +1.4 1,051,779 - SM_b21526 0.81 +0.3
Or see this region's nucleotide sequence