Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21422

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21421 and SM_b21422 overlap by 4 nucleotidesSM_b21422 and SM_b21423 overlap by 8 nucleotidesSM_b21423 and SM_b21424 are separated by 2 nucleotides SM_b21421: SM_b21421 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,351,678 to 1,352,739 _b21421 SM_b21422: SM_b21422 - sugar uptake ABC transporter ATP-binding protein, at 1,352,736 to 1,354,232 _b21422 SM_b21423: SM_b21423 - sugar uptake ABC transporter permease, at 1,354,225 to 1,355,220 _b21423 SM_b21424: SM_b21424 - esterase or acylase, at 1,355,223 to 1,356,959 _b21424 Position (kb) 1352 1353 1354 1355Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1352.203 kb on - strand, within SM_b21421at 1352.233 kb on + strand, within SM_b21421at 1352.234 kb on - strand, within SM_b21421at 1352.591 kb on - strand, within SM_b21421at 1352.605 kb on + strand, within SM_b21421at 1352.758 kb on + strandat 1353.205 kb on + strand, within SM_b21422at 1353.205 kb on + strand, within SM_b21422at 1353.206 kb on - strand, within SM_b21422at 1353.321 kb on + strand, within SM_b21422at 1353.321 kb on + strand, within SM_b21422at 1353.322 kb on - strand, within SM_b21422at 1353.402 kb on - strand, within SM_b21422at 1353.402 kb on - strand, within SM_b21422at 1353.437 kb on - strand, within SM_b21422at 1353.437 kb on - strand, within SM_b21422at 1353.437 kb on - strand, within SM_b21422at 1353.593 kb on + strand, within SM_b21422at 1353.666 kb on + strand, within SM_b21422at 1353.666 kb on + strand, within SM_b21422at 1353.666 kb on + strand, within SM_b21422at 1353.666 kb on + strand, within SM_b21422at 1353.667 kb on - strand, within SM_b21422at 1353.667 kb on - strand, within SM_b21422at 1353.667 kb on - strand, within SM_b21422at 1353.724 kb on + strand, within SM_b21422at 1353.724 kb on + strand, within SM_b21422at 1353.724 kb on + strand, within SM_b21422at 1353.733 kb on + strand, within SM_b21422at 1353.858 kb on + strand, within SM_b21422at 1353.859 kb on - strand, within SM_b21422at 1354.102 kb on - strandat 1354.372 kb on + strand, within SM_b21423at 1354.372 kb on + strand, within SM_b21423at 1354.372 kb on + strand, within SM_b21423at 1354.728 kb on + strand, within SM_b21423at 1354.729 kb on - strand, within SM_b21423at 1354.785 kb on + strand, within SM_b21423at 1354.785 kb on + strand, within SM_b21423at 1354.785 kb on + strand, within SM_b21423at 1354.785 kb on + strand, within SM_b21423at 1354.786 kb on - strand, within SM_b21423at 1354.834 kb on + strand, within SM_b21423at 1355.031 kb on + strand, within SM_b21423at 1355.160 kb on - strandat 1355.160 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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1,352,203 - SM_b21421 0.49 +0.0
1,352,233 + SM_b21421 0.52 -1.1
1,352,234 - SM_b21421 0.52 -1.7
1,352,591 - SM_b21421 0.86 -0.3
1,352,605 + SM_b21421 0.87 -3.1
1,352,758 + +0.7
1,353,205 + SM_b21422 0.31 +1.1
1,353,205 + SM_b21422 0.31 -1.5
1,353,206 - SM_b21422 0.31 +0.2
1,353,321 + SM_b21422 0.39 +0.8
1,353,321 + SM_b21422 0.39 +1.6
1,353,322 - SM_b21422 0.39 -1.0
1,353,402 - SM_b21422 0.44 -2.0
1,353,402 - SM_b21422 0.44 -0.2
1,353,437 - SM_b21422 0.47 +1.9
1,353,437 - SM_b21422 0.47 +0.4
1,353,437 - SM_b21422 0.47 +0.4
1,353,593 + SM_b21422 0.57 -0.7
1,353,666 + SM_b21422 0.62 +0.5
1,353,666 + SM_b21422 0.62 +0.7
1,353,666 + SM_b21422 0.62 -0.4
1,353,666 + SM_b21422 0.62 -2.4
1,353,667 - SM_b21422 0.62 -1.2
1,353,667 - SM_b21422 0.62 -1.7
1,353,667 - SM_b21422 0.62 -2.4
1,353,724 + SM_b21422 0.66 -1.2
1,353,724 + SM_b21422 0.66 -0.3
1,353,724 + SM_b21422 0.66 -3.7
1,353,733 + SM_b21422 0.67 -1.1
1,353,858 + SM_b21422 0.75 -0.6
1,353,859 - SM_b21422 0.75 -0.7
1,354,102 - +0.1
1,354,372 + SM_b21423 0.15 -3.8
1,354,372 + SM_b21423 0.15 -0.2
1,354,372 + SM_b21423 0.15 +1.8
1,354,728 + SM_b21423 0.51 -0.0
1,354,729 - SM_b21423 0.51 -3.6
1,354,785 + SM_b21423 0.56 -0.9
1,354,785 + SM_b21423 0.56 +1.4
1,354,785 + SM_b21423 0.56 -0.9
1,354,785 + SM_b21423 0.56 -1.6
1,354,786 - SM_b21423 0.56 -0.5
1,354,834 + SM_b21423 0.61 -1.5
1,355,031 + SM_b21423 0.81 -1.9
1,355,160 - +0.4
1,355,160 - -3.4

Or see this region's nucleotide sequence