Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21161 and SM_b21162 are separated by 73 nucleotides SM_b21162 and SM_b21163 are separated by 197 nucleotides
SM_b21161: SM_b21161 - hypothetical protein, at 905,250 to 906,683
_b21161
SM_b21162: SM_b21162 - integral membrane transporter protein, at 906,757 to 907,971
_b21162
SM_b21163: SM_b21163 - Urocanate hydratase (EC 4.2.1.49) <small>(from data)</small>, at 908,169 to 909,842
_b21163
Position (kb) 906
907
908 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 905.854 kb on - strand, within SM_b21161 at 905.854 kb on - strand, within SM_b21161 at 905.916 kb on + strand, within SM_b21161 at 906.109 kb on + strand, within SM_b21161 at 906.401 kb on - strand, within SM_b21161 at 906.401 kb on - strand, within SM_b21161 at 906.433 kb on - strand, within SM_b21161 at 906.437 kb on + strand, within SM_b21161 at 906.437 kb on + strand, within SM_b21161 at 906.438 kb on - strand, within SM_b21161 at 906.438 kb on - strand, within SM_b21161 at 906.438 kb on - strand, within SM_b21161 at 906.438 kb on - strand, within SM_b21161 at 906.507 kb on + strand, within SM_b21161 at 906.690 kb on - strand at 906.988 kb on + strand, within SM_b21162 at 907.046 kb on - strand, within SM_b21162 at 907.133 kb on - strand, within SM_b21162 at 907.403 kb on + strand, within SM_b21162 at 907.404 kb on - strand, within SM_b21162 at 907.404 kb on - strand, within SM_b21162 at 907.406 kb on + strand, within SM_b21162 at 907.406 kb on + strand, within SM_b21162 at 907.543 kb on - strand, within SM_b21162 at 907.608 kb on + strand, within SM_b21162 at 907.609 kb on - strand, within SM_b21162 at 907.609 kb on - strand, within SM_b21162 at 907.638 kb on - strand, within SM_b21162 at 907.639 kb on + strand, within SM_b21162 at 907.639 kb on + strand, within SM_b21162 at 907.640 kb on - strand, within SM_b21162 at 907.640 kb on - strand, within SM_b21162 at 907.640 kb on - strand, within SM_b21162 at 907.640 kb on - strand, within SM_b21162 at 907.691 kb on - strand, within SM_b21162 at 907.750 kb on + strand, within SM_b21162 at 907.751 kb on - strand, within SM_b21162 at 907.751 kb on - strand, within SM_b21162 at 907.889 kb on + strand at 907.890 kb on - strand at 908.164 kb on + strand at 908.164 kb on + strand at 908.165 kb on - strand at 908.165 kb on - strand at 908.221 kb on - strand at 908.316 kb on - strand at 908.396 kb on + strand, within SM_b21163 at 908.396 kb on + strand, within SM_b21163 at 908.396 kb on + strand, within SM_b21163 at 908.726 kb on - strand, within SM_b21163 at 908.798 kb on + strand, within SM_b21163 at 908.801 kb on - strand, within SM_b21163 at 908.801 kb on - strand, within SM_b21163 at 908.878 kb on + strand, within SM_b21163
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 905,854 - SM_b21161 0.42 -3.1 905,854 - SM_b21161 0.42 -2.6 905,916 + SM_b21161 0.46 -3.9 906,109 + SM_b21161 0.60 +0.5 906,401 - SM_b21161 0.80 -0.7 906,401 - SM_b21161 0.80 +0.2 906,433 - SM_b21161 0.82 +0.2 906,437 + SM_b21161 0.83 -1.2 906,437 + SM_b21161 0.83 -0.6 906,438 - SM_b21161 0.83 +0.4 906,438 - SM_b21161 0.83 +0.2 906,438 - SM_b21161 0.83 -2.1 906,438 - SM_b21161 0.83 +0.4 906,507 + SM_b21161 0.88 -0.6 906,690 - +1.1 906,988 + SM_b21162 0.19 -2.1 907,046 - SM_b21162 0.24 +0.4 907,133 - SM_b21162 0.31 +0.3 907,403 + SM_b21162 0.53 +0.4 907,404 - SM_b21162 0.53 +1.2 907,404 - SM_b21162 0.53 +1.1 907,406 + SM_b21162 0.53 -1.7 907,406 + SM_b21162 0.53 -2.5 907,543 - SM_b21162 0.65 +0.6 907,608 + SM_b21162 0.70 -3.3 907,609 - SM_b21162 0.70 +0.1 907,609 - SM_b21162 0.70 +0.9 907,638 - SM_b21162 0.73 +0.9 907,639 + SM_b21162 0.73 -0.5 907,639 + SM_b21162 0.73 -2.2 907,640 - SM_b21162 0.73 -2.9 907,640 - SM_b21162 0.73 +0.4 907,640 - SM_b21162 0.73 -0.4 907,640 - SM_b21162 0.73 +0.4 907,691 - SM_b21162 0.77 +0.4 907,750 + SM_b21162 0.82 +0.5 907,751 - SM_b21162 0.82 +0.1 907,751 - SM_b21162 0.82 +1.3 907,889 + -3.4 907,890 - +1.7 908,164 + -1.8 908,164 + +1.8 908,165 - -2.3 908,165 - -0.9 908,221 - -0.3 908,316 - -0.5 908,396 + SM_b21163 0.14 +0.3 908,396 + SM_b21163 0.14 -4.6 908,396 + SM_b21163 0.14 +0.9 908,726 - SM_b21163 0.33 -1.4 908,798 + SM_b21163 0.38 -0.4 908,801 - SM_b21163 0.38 -0.5 908,801 - SM_b21163 0.38 +0.7 908,878 + SM_b21163 0.42 +0.6
Or see this region's nucleotide sequence