Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21062

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21061 and SM_b21062 are separated by 21 nucleotidesSM_b21062 and SM_b21063 are separated by 58 nucleotides SM_b21061: SM_b21061 - NDP-hexose 3-C-methyltransferase, at 694,544 to 695,791 _b21061 SM_b21062: SM_b21062 - NDP-hexose methyltransferase, at 695,813 to 697,012 _b21062 SM_b21063: SM_b21063 - nucleotide-binding protein, at 697,071 to 698,642 _b21063 Position (kb) 695 696 697 698Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 694.813 kb on - strand, within SM_b21061at 694.919 kb on + strand, within SM_b21061at 694.920 kb on - strand, within SM_b21061at 694.920 kb on - strand, within SM_b21061at 694.989 kb on + strand, within SM_b21061at 695.126 kb on - strand, within SM_b21061at 695.127 kb on + strand, within SM_b21061at 695.127 kb on + strand, within SM_b21061at 695.174 kb on + strand, within SM_b21061at 695.174 kb on + strand, within SM_b21061at 695.174 kb on + strand, within SM_b21061at 695.175 kb on - strand, within SM_b21061at 695.175 kb on - strand, within SM_b21061at 695.175 kb on - strand, within SM_b21061at 695.234 kb on + strand, within SM_b21061at 695.235 kb on - strand, within SM_b21061at 695.235 kb on - strand, within SM_b21061at 695.254 kb on - strand, within SM_b21061at 695.282 kb on + strand, within SM_b21061at 695.282 kb on + strand, within SM_b21061at 695.333 kb on + strand, within SM_b21061at 695.334 kb on - strand, within SM_b21061at 695.334 kb on - strand, within SM_b21061at 695.407 kb on + strand, within SM_b21061at 695.408 kb on - strand, within SM_b21061at 695.408 kb on - strand, within SM_b21061at 695.418 kb on - strand, within SM_b21061at 695.575 kb on - strand, within SM_b21061at 695.615 kb on + strand, within SM_b21061at 695.615 kb on + strand, within SM_b21061at 695.615 kb on + strand, within SM_b21061at 695.616 kb on - strand, within SM_b21061at 695.616 kb on - strand, within SM_b21061at 695.616 kb on - strand, within SM_b21061at 695.616 kb on - strand, within SM_b21061at 695.617 kb on + strand, within SM_b21061at 695.617 kb on + strand, within SM_b21061at 695.617 kb on + strand, within SM_b21061at 695.617 kb on + strand, within SM_b21061at 695.617 kb on + strand, within SM_b21061at 695.618 kb on - strand, within SM_b21061at 695.678 kb on + strandat 695.679 kb on - strandat 695.796 kb on - strandat 695.895 kb on + strandat 695.923 kb on - strandat 695.968 kb on + strand, within SM_b21062at 696.069 kb on - strand, within SM_b21062at 696.139 kb on + strand, within SM_b21062at 696.139 kb on + strand, within SM_b21062at 696.140 kb on - strand, within SM_b21062at 696.143 kb on + strand, within SM_b21062at 696.143 kb on + strand, within SM_b21062at 696.143 kb on + strand, within SM_b21062at 696.143 kb on + strand, within SM_b21062at 696.143 kb on + strand, within SM_b21062at 696.143 kb on + strand, within SM_b21062at 696.143 kb on + strand, within SM_b21062at 696.143 kb on + strand, within SM_b21062at 696.144 kb on - strand, within SM_b21062at 696.144 kb on - strand, within SM_b21062at 696.144 kb on - strand, within SM_b21062at 696.144 kb on - strand, within SM_b21062at 696.144 kb on - strand, within SM_b21062at 696.144 kb on - strand, within SM_b21062at 696.144 kb on - strand, within SM_b21062at 696.361 kb on - strand, within SM_b21062at 696.433 kb on - strand, within SM_b21062at 696.437 kb on + strand, within SM_b21062at 696.437 kb on + strand, within SM_b21062at 696.461 kb on + strand, within SM_b21062at 696.461 kb on + strand, within SM_b21062at 696.497 kb on + strand, within SM_b21062at 696.513 kb on - strand, within SM_b21062at 696.596 kb on + strand, within SM_b21062at 696.597 kb on - strand, within SM_b21062at 696.845 kb on + strand, within SM_b21062at 696.846 kb on - strand, within SM_b21062at 696.948 kb on - strandat 696.948 kb on - strandat 697.171 kb on + strandat 697.172 kb on - strandat 697.172 kb on - strandat 697.188 kb on - strandat 697.188 kb on - strandat 697.199 kb on + strandat 697.232 kb on + strand, within SM_b21063at 697.300 kb on - strand, within SM_b21063at 697.420 kb on + strand, within SM_b21063at 697.529 kb on + strand, within SM_b21063at 697.534 kb on - strand, within SM_b21063at 697.534 kb on - strand, within SM_b21063at 697.534 kb on - strand, within SM_b21063at 697.554 kb on + strand, within SM_b21063at 697.578 kb on - strand, within SM_b21063at 697.719 kb on + strand, within SM_b21063at 697.720 kb on - strand, within SM_b21063at 697.722 kb on + strand, within SM_b21063at 697.722 kb on + strand, within SM_b21063at 697.755 kb on + strand, within SM_b21063at 697.755 kb on + strand, within SM_b21063at 697.756 kb on - strand, within SM_b21063at 697.758 kb on + strand, within SM_b21063at 697.851 kb on + strand, within SM_b21063at 697.873 kb on + strand, within SM_b21063at 697.918 kb on + strand, within SM_b21063at 697.918 kb on + strand, within SM_b21063at 697.919 kb on - strand, within SM_b21063at 697.919 kb on - strand, within SM_b21063

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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694,813 - SM_b21061 0.22 -3.0
694,919 + SM_b21061 0.30 +0.5
694,920 - SM_b21061 0.30 +2.1
694,920 - SM_b21061 0.30 -2.4
694,989 + SM_b21061 0.36 -0.1
695,126 - SM_b21061 0.47 -2.7
695,127 + SM_b21061 0.47 -0.4
695,127 + SM_b21061 0.47 -0.2
695,174 + SM_b21061 0.50 +0.8
695,174 + SM_b21061 0.50 -0.6
695,174 + SM_b21061 0.50 -3.6
695,175 - SM_b21061 0.51 +0.5
695,175 - SM_b21061 0.51 +0.2
695,175 - SM_b21061 0.51 +2.6
695,234 + SM_b21061 0.55 -1.8
695,235 - SM_b21061 0.55 +0.5
695,235 - SM_b21061 0.55 -0.9
695,254 - SM_b21061 0.57 -1.9
695,282 + SM_b21061 0.59 -0.3
695,282 + SM_b21061 0.59 +0.6
695,333 + SM_b21061 0.63 -0.9
695,334 - SM_b21061 0.63 -1.4
695,334 - SM_b21061 0.63 -2.9
695,407 + SM_b21061 0.69 -1.8
695,408 - SM_b21061 0.69 -2.6
695,408 - SM_b21061 0.69 +1.0
695,418 - SM_b21061 0.70 -3.6
695,575 - SM_b21061 0.83 -0.2
695,615 + SM_b21061 0.86 +0.0
695,615 + SM_b21061 0.86 -2.8
695,615 + SM_b21061 0.86 +0.7
695,616 - SM_b21061 0.86 -1.9
695,616 - SM_b21061 0.86 +0.4
695,616 - SM_b21061 0.86 +2.8
695,616 - SM_b21061 0.86 -3.1
695,617 + SM_b21061 0.86 +0.6
695,617 + SM_b21061 0.86 -0.0
695,617 + SM_b21061 0.86 -0.2
695,617 + SM_b21061 0.86 +1.1
695,617 + SM_b21061 0.86 -1.6
695,618 - SM_b21061 0.86 +0.5
695,678 + -0.1
695,679 - +0.8
695,796 - -2.0
695,895 + -1.6
695,923 - -2.2
695,968 + SM_b21062 0.13 +0.8
696,069 - SM_b21062 0.21 -3.5
696,139 + SM_b21062 0.27 -0.2
696,139 + SM_b21062 0.27 +1.5
696,140 - SM_b21062 0.27 -1.5
696,143 + SM_b21062 0.28 +1.6
696,143 + SM_b21062 0.28 -1.1
696,143 + SM_b21062 0.28 -0.6
696,143 + SM_b21062 0.28 +1.0
696,143 + SM_b21062 0.28 -1.4
696,143 + SM_b21062 0.28 +3.9
696,143 + SM_b21062 0.28 -0.4
696,143 + SM_b21062 0.28 +1.2
696,144 - SM_b21062 0.28 -0.2
696,144 - SM_b21062 0.28 -0.2
696,144 - SM_b21062 0.28 -3.7
696,144 - SM_b21062 0.28 +1.0
696,144 - SM_b21062 0.28 -2.7
696,144 - SM_b21062 0.28 -0.8
696,144 - SM_b21062 0.28 -0.8
696,361 - SM_b21062 0.46 -1.2
696,433 - SM_b21062 0.52 -0.0
696,437 + SM_b21062 0.52 -2.0
696,437 + SM_b21062 0.52 +0.5
696,461 + SM_b21062 0.54 +1.9
696,461 + SM_b21062 0.54 +1.2
696,497 + SM_b21062 0.57 -0.5
696,513 - SM_b21062 0.58 -0.8
696,596 + SM_b21062 0.65 -0.2
696,597 - SM_b21062 0.65 -2.0
696,845 + SM_b21062 0.86 -0.4
696,846 - SM_b21062 0.86 -2.5
696,948 - -3.7
696,948 - +1.6
697,171 + +0.5
697,172 - +0.4
697,172 - +0.2
697,188 - +2.9
697,188 - -0.9
697,199 + +0.5
697,232 + SM_b21063 0.10 -0.2
697,300 - SM_b21063 0.15 +0.0
697,420 + SM_b21063 0.22 -0.3
697,529 + SM_b21063 0.29 -3.0
697,534 - SM_b21063 0.29 +0.2
697,534 - SM_b21063 0.29 +1.2
697,534 - SM_b21063 0.29 +1.2
697,554 + SM_b21063 0.31 +1.1
697,578 - SM_b21063 0.32 +0.1
697,719 + SM_b21063 0.41 +0.7
697,720 - SM_b21063 0.41 -0.2
697,722 + SM_b21063 0.41 -0.8
697,722 + SM_b21063 0.41 +0.1
697,755 + SM_b21063 0.44 +0.1
697,755 + SM_b21063 0.44 +0.1
697,756 - SM_b21063 0.44 -0.0
697,758 + SM_b21063 0.44 +1.1
697,851 + SM_b21063 0.50 -3.2
697,873 + SM_b21063 0.51 +0.8
697,918 + SM_b21063 0.54 -1.3
697,918 + SM_b21063 0.54 -0.5
697,919 - SM_b21063 0.54 -0.1
697,919 - SM_b21063 0.54 -1.5

Or see this region's nucleotide sequence