Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20999

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20998 and SM_b20999 are separated by 9 nucleotidesSM_b20999 and SM_b21000 are separated by 152 nucleotides SM_b20998: SM_b20998 - hypothetical protein, at 1,234,127 to 1,235,131 _b20998 SM_b20999: SM_b20999 - transporter, at 1,235,141 to 1,236,403 _b20999 SM_b21000: SM_b21000 - transporter, at 1,236,556 to 1,237,689 _b21000 Position (kb) 1235 1236 1237Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1234.314 kb on - strand, within SM_b20998at 1234.314 kb on - strand, within SM_b20998at 1234.365 kb on - strand, within SM_b20998at 1234.661 kb on + strand, within SM_b20998at 1234.662 kb on - strand, within SM_b20998at 1234.662 kb on - strand, within SM_b20998at 1234.662 kb on - strand, within SM_b20998at 1234.662 kb on - strand, within SM_b20998at 1234.715 kb on + strand, within SM_b20998at 1234.716 kb on - strand, within SM_b20998at 1234.716 kb on - strand, within SM_b20998at 1234.716 kb on - strand, within SM_b20998at 1234.835 kb on + strand, within SM_b20998at 1234.835 kb on + strand, within SM_b20998at 1234.836 kb on - strand, within SM_b20998at 1234.924 kb on + strand, within SM_b20998at 1234.924 kb on + strand, within SM_b20998at 1234.940 kb on + strand, within SM_b20998at 1234.940 kb on + strand, within SM_b20998at 1234.941 kb on - strand, within SM_b20998at 1235.069 kb on + strandat 1235.069 kb on + strandat 1235.070 kb on - strandat 1236.509 kb on - strandat 1236.543 kb on + strandat 1236.653 kb on + strandat 1236.653 kb on + strandat 1236.788 kb on + strand, within SM_b21000at 1236.789 kb on - strand, within SM_b21000at 1236.908 kb on + strand, within SM_b21000at 1236.908 kb on + strand, within SM_b21000at 1236.953 kb on + strand, within SM_b21000at 1236.953 kb on + strand, within SM_b21000at 1236.954 kb on - strand, within SM_b21000at 1236.954 kb on - strand, within SM_b21000at 1237.064 kb on + strand, within SM_b21000at 1237.065 kb on - strand, within SM_b21000at 1237.085 kb on + strand, within SM_b21000at 1237.086 kb on - strand, within SM_b21000at 1237.086 kb on - strand, within SM_b21000at 1237.288 kb on - strand, within SM_b21000

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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1,234,314 - SM_b20998 0.19 +1.4
1,234,314 - SM_b20998 0.19 -0.5
1,234,365 - SM_b20998 0.24 -1.6
1,234,661 + SM_b20998 0.53 -1.0
1,234,662 - SM_b20998 0.53 -0.5
1,234,662 - SM_b20998 0.53 -0.8
1,234,662 - SM_b20998 0.53 +1.6
1,234,662 - SM_b20998 0.53 -1.5
1,234,715 + SM_b20998 0.59 -3.1
1,234,716 - SM_b20998 0.59 +2.7
1,234,716 - SM_b20998 0.59 -0.2
1,234,716 - SM_b20998 0.59 +0.0
1,234,835 + SM_b20998 0.70 -2.6
1,234,835 + SM_b20998 0.70 -2.3
1,234,836 - SM_b20998 0.71 +2.7
1,234,924 + SM_b20998 0.79 +0.6
1,234,924 + SM_b20998 0.79 -0.3
1,234,940 + SM_b20998 0.81 -3.0
1,234,940 + SM_b20998 0.81 +0.1
1,234,941 - SM_b20998 0.81 -0.2
1,235,069 + -0.7
1,235,069 + -1.8
1,235,070 - +0.4
1,236,509 - +0.1
1,236,543 + +2.0
1,236,653 + +0.4
1,236,653 + -0.1
1,236,788 + SM_b21000 0.20 -4.2
1,236,789 - SM_b21000 0.21 +0.8
1,236,908 + SM_b21000 0.31 +1.1
1,236,908 + SM_b21000 0.31 -1.3
1,236,953 + SM_b21000 0.35 -0.1
1,236,953 + SM_b21000 0.35 +0.6
1,236,954 - SM_b21000 0.35 -0.1
1,236,954 - SM_b21000 0.35 -0.4
1,237,064 + SM_b21000 0.45 -1.5
1,237,065 - SM_b21000 0.45 -2.3
1,237,085 + SM_b21000 0.47 -0.2
1,237,086 - SM_b21000 0.47 +1.4
1,237,086 - SM_b21000 0.47 -1.0
1,237,288 - SM_b21000 0.65 +0.3

Or see this region's nucleotide sequence