Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20990 and SM_b20991 are separated by 128 nucleotides SM_b20991 and SM_b20992 are separated by 133 nucleotides
SM_b20990: SM_b20990 - membrane protein necessary for nodulation competitiveness, at 1,223,683 to 1,225,119
_b20990
SM_b20991: SM_b20991 - hypothetical protein, at 1,225,248 to 1,226,711
_b20991
SM_b20992: SM_b20992 - hypothetical protein, at 1,226,845 to 1,228,248
_b20992
Position (kb)
1225
1226
1227 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1224.249 kb on - strand, within SM_b20990 at 1224.741 kb on - strand, within SM_b20990 at 1224.747 kb on + strand at 1224.747 kb on + strand, within SM_b20990 at 1224.748 kb on - strand, within SM_b20990 at 1224.748 kb on - strand, within SM_b20990 at 1224.749 kb on + strand, within SM_b20990 at 1224.749 kb on + strand, within SM_b20990 at 1224.749 kb on + strand, within SM_b20990 at 1224.750 kb on - strand, within SM_b20990 at 1224.750 kb on - strand, within SM_b20990 at 1224.750 kb on - strand, within SM_b20990 at 1224.750 kb on - strand, within SM_b20990 at 1224.750 kb on - strand, within SM_b20990 at 1224.750 kb on - strand, within SM_b20990 at 1224.750 kb on - strand, within SM_b20990 at 1224.750 kb on - strand, within SM_b20990 at 1224.830 kb on - strand, within SM_b20990 at 1224.830 kb on - strand, within SM_b20990 at 1224.830 kb on - strand, within SM_b20990 at 1224.849 kb on + strand, within SM_b20990 at 1224.850 kb on - strand, within SM_b20990 at 1224.953 kb on - strand, within SM_b20990 at 1225.112 kb on - strand at 1225.166 kb on + strand at 1225.166 kb on + strand at 1225.167 kb on - strand at 1225.169 kb on - strand at 1225.169 kb on - strand at 1225.501 kb on + strand, within SM_b20991 at 1225.501 kb on + strand, within SM_b20991 at 1225.501 kb on + strand, within SM_b20991 at 1225.502 kb on - strand, within SM_b20991 at 1225.502 kb on - strand, within SM_b20991 at 1225.632 kb on - strand, within SM_b20991 at 1225.661 kb on + strand, within SM_b20991 at 1225.661 kb on + strand, within SM_b20991 at 1225.662 kb on - strand, within SM_b20991 at 1225.662 kb on - strand, within SM_b20991 at 1225.689 kb on + strand, within SM_b20991 at 1225.689 kb on + strand, within SM_b20991 at 1225.689 kb on + strand, within SM_b20991 at 1225.690 kb on - strand, within SM_b20991 at 1225.690 kb on - strand, within SM_b20991 at 1225.868 kb on + strand, within SM_b20991 at 1225.868 kb on + strand, within SM_b20991 at 1225.868 kb on + strand at 1225.868 kb on + strand, within SM_b20991 at 1225.869 kb on - strand, within SM_b20991 at 1225.869 kb on - strand, within SM_b20991 at 1225.869 kb on - strand, within SM_b20991 at 1225.960 kb on + strand, within SM_b20991 at 1226.155 kb on + strand, within SM_b20991 at 1226.155 kb on + strand, within SM_b20991 at 1226.155 kb on + strand, within SM_b20991 at 1226.156 kb on - strand, within SM_b20991 at 1226.156 kb on - strand, within SM_b20991 at 1226.247 kb on + strand, within SM_b20991 at 1226.368 kb on + strand, within SM_b20991 at 1226.395 kb on + strand, within SM_b20991 at 1226.395 kb on + strand, within SM_b20991 at 1226.541 kb on - strand, within SM_b20991 at 1226.545 kb on + strand, within SM_b20991 at 1226.545 kb on + strand, within SM_b20991 at 1226.545 kb on + strand, within SM_b20991 at 1226.546 kb on - strand, within SM_b20991 at 1226.546 kb on - strand, within SM_b20991 at 1226.711 kb on + strand at 1226.712 kb on - strand at 1226.781 kb on - strand at 1226.781 kb on - strand at 1226.839 kb on + strand at 1226.839 kb on + strand at 1226.840 kb on - strand at 1226.883 kb on + strand at 1226.901 kb on - strand at 1226.923 kb on + strand at 1226.923 kb on + strand at 1226.924 kb on - strand at 1227.028 kb on + strand, within SM_b20992 at 1227.094 kb on - strand, within SM_b20992 at 1227.299 kb on + strand, within SM_b20992 at 1227.299 kb on + strand, within SM_b20992 at 1227.516 kb on + strand, within SM_b20992 at 1227.666 kb on + strand, within SM_b20992
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 1,224,249 - SM_b20990 0.39 +1.3 1,224,741 - SM_b20990 0.74 -3.5 1,224,747 + +3.0 1,224,747 + SM_b20990 0.74 +1.8 1,224,748 - SM_b20990 0.74 +0.7 1,224,748 - SM_b20990 0.74 +0.4 1,224,749 + SM_b20990 0.74 -2.2 1,224,749 + SM_b20990 0.74 -0.3 1,224,749 + SM_b20990 0.74 -0.9 1,224,750 - SM_b20990 0.74 -1.9 1,224,750 - SM_b20990 0.74 +0.9 1,224,750 - SM_b20990 0.74 +0.5 1,224,750 - SM_b20990 0.74 -0.6 1,224,750 - SM_b20990 0.74 -2.6 1,224,750 - SM_b20990 0.74 -1.2 1,224,750 - SM_b20990 0.74 +1.5 1,224,750 - SM_b20990 0.74 -3.1 1,224,830 - SM_b20990 0.80 +0.0 1,224,830 - SM_b20990 0.80 -1.3 1,224,830 - SM_b20990 0.80 +0.4 1,224,849 + SM_b20990 0.81 -4.5 1,224,850 - SM_b20990 0.81 -1.9 1,224,953 - SM_b20990 0.88 +0.0 1,225,112 - +0.5 1,225,166 + +0.1 1,225,166 + +0.1 1,225,167 - +0.1 1,225,169 - -0.3 1,225,169 - -0.3 1,225,501 + SM_b20991 0.17 -0.1 1,225,501 + SM_b20991 0.17 -0.0 1,225,501 + SM_b20991 0.17 +1.1 1,225,502 - SM_b20991 0.17 -0.1 1,225,502 - SM_b20991 0.17 -0.8 1,225,632 - SM_b20991 0.26 +0.5 1,225,661 + SM_b20991 0.28 +0.7 1,225,661 + SM_b20991 0.28 +2.0 1,225,662 - SM_b20991 0.28 -0.4 1,225,662 - SM_b20991 0.28 -0.2 1,225,689 + SM_b20991 0.30 -0.5 1,225,689 + SM_b20991 0.30 +0.5 1,225,689 + SM_b20991 0.30 +1.4 1,225,690 - SM_b20991 0.30 +0.5 1,225,690 - SM_b20991 0.30 -0.8 1,225,868 + SM_b20991 0.42 +0.3 1,225,868 + SM_b20991 0.42 -0.7 1,225,868 + +2.0 1,225,868 + SM_b20991 0.42 +0.3 1,225,869 - SM_b20991 0.42 +0.6 1,225,869 - SM_b20991 0.42 +0.4 1,225,869 - SM_b20991 0.42 -0.3 1,225,960 + SM_b20991 0.49 -3.4 1,226,155 + SM_b20991 0.62 +0.9 1,226,155 + SM_b20991 0.62 +2.2 1,226,155 + SM_b20991 0.62 +0.6 1,226,156 - SM_b20991 0.62 -0.1 1,226,156 - SM_b20991 0.62 +1.4 1,226,247 + SM_b20991 0.68 +0.4 1,226,368 + SM_b20991 0.77 +0.5 1,226,395 + SM_b20991 0.78 -3.4 1,226,395 + SM_b20991 0.78 +0.1 1,226,541 - SM_b20991 0.88 -1.3 1,226,545 + SM_b20991 0.89 +3.1 1,226,545 + SM_b20991 0.89 +0.7 1,226,545 + SM_b20991 0.89 +0.2 1,226,546 - SM_b20991 0.89 -3.1 1,226,546 - SM_b20991 0.89 -0.2 1,226,711 + +0.3 1,226,712 - +0.6 1,226,781 - +0.6 1,226,781 - -0.8 1,226,839 + +1.3 1,226,839 + +1.1 1,226,840 - +0.2 1,226,883 + +0.9 1,226,901 - +0.9 1,226,923 + +0.6 1,226,923 + +2.0 1,226,924 - -0.3 1,227,028 + SM_b20992 0.13 -0.3 1,227,094 - SM_b20992 0.18 -0.2 1,227,299 + SM_b20992 0.32 -0.1 1,227,299 + SM_b20992 0.32 +1.1 1,227,516 + SM_b20992 0.48 +0.8 1,227,666 + SM_b20992 0.58 +0.5
Or see this region's nucleotide sequence