Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20967

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20966 and SM_b20967 are separated by 189 nucleotidesSM_b20967 and SM_b20968 are separated by 7 nucleotides SM_b20966: SM_b20966 - beta-galactosidase, at 1,194,246 to 1,196,186 _b20966 SM_b20967: SM_b20967 - LacI family transcriptional regulator, at 1,196,376 to 1,197,410 _b20967 SM_b20968: SM_b20968 - hypothetical protein, at 1,197,418 to 1,199,130 _b20968 Position (kb) 1196 1197 1198Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1195.400 kb on - strand, within SM_b20966at 1195.441 kb on + strand, within SM_b20966at 1195.441 kb on + strand, within SM_b20966at 1195.441 kb on + strand, within SM_b20966at 1195.634 kb on + strand, within SM_b20966at 1195.634 kb on + strand, within SM_b20966at 1195.635 kb on - strand, within SM_b20966at 1195.697 kb on - strand, within SM_b20966at 1195.697 kb on - strand, within SM_b20966at 1195.744 kb on + strand, within SM_b20966at 1195.745 kb on - strand, within SM_b20966at 1195.745 kb on - strand, within SM_b20966at 1195.745 kb on - strand, within SM_b20966at 1195.750 kb on + strand, within SM_b20966at 1195.751 kb on - strand, within SM_b20966at 1195.771 kb on + strandat 1195.772 kb on - strand, within SM_b20966at 1195.801 kb on + strand, within SM_b20966at 1195.801 kb on + strand, within SM_b20966at 1195.801 kb on + strand, within SM_b20966at 1195.801 kb on + strand, within SM_b20966at 1195.801 kb on + strand, within SM_b20966at 1195.802 kb on - strand, within SM_b20966at 1195.802 kb on - strand, within SM_b20966at 1195.802 kb on - strand, within SM_b20966at 1195.802 kb on - strand, within SM_b20966at 1195.882 kb on + strand, within SM_b20966at 1195.883 kb on - strand, within SM_b20966at 1196.073 kb on + strandat 1196.074 kb on - strandat 1196.179 kb on + strandat 1196.179 kb on + strandat 1196.179 kb on + strandat 1196.180 kb on - strandat 1196.180 kb on - strandat 1196.261 kb on + strandat 1196.261 kb on + strandat 1196.262 kb on - strandat 1196.340 kb on - strandat 1196.340 kb on - strandat 1196.340 kb on - strandat 1196.340 kb on - strandat 1196.341 kb on + strandat 1196.518 kb on + strand, within SM_b20967at 1196.521 kb on + strand, within SM_b20967at 1196.522 kb on - strand, within SM_b20967at 1196.522 kb on - strand, within SM_b20967at 1196.545 kb on + strand, within SM_b20967at 1196.660 kb on + strand, within SM_b20967at 1196.660 kb on + strand, within SM_b20967at 1196.660 kb on + strand, within SM_b20967at 1196.661 kb on - strand, within SM_b20967at 1196.661 kb on - strand, within SM_b20967at 1196.661 kb on - strand, within SM_b20967at 1196.662 kb on + strand, within SM_b20967at 1196.663 kb on - strand, within SM_b20967at 1196.759 kb on - strand, within SM_b20967at 1196.816 kb on - strand, within SM_b20967at 1196.921 kb on - strand, within SM_b20967at 1196.921 kb on - strand, within SM_b20967at 1196.921 kb on - strand, within SM_b20967at 1196.921 kb on - strand, within SM_b20967at 1196.953 kb on + strand, within SM_b20967at 1196.954 kb on - strand, within SM_b20967at 1197.143 kb on + strand, within SM_b20967at 1197.143 kb on + strand, within SM_b20967at 1197.144 kb on - strand, within SM_b20967at 1197.226 kb on + strand, within SM_b20967at 1197.227 kb on - strand, within SM_b20967at 1197.271 kb on + strand, within SM_b20967at 1197.467 kb on + strandat 1197.467 kb on + strandat 1197.540 kb on + strandat 1197.540 kb on + strandat 1197.632 kb on + strand, within SM_b20968at 1197.632 kb on + strand, within SM_b20968at 1197.632 kb on + strand, within SM_b20968at 1197.633 kb on - strand, within SM_b20968at 1197.633 kb on - strand, within SM_b20968at 1197.633 kb on - strand, within SM_b20968at 1198.080 kb on - strand, within SM_b20968at 1198.158 kb on - strand, within SM_b20968at 1198.271 kb on + strand, within SM_b20968

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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1,195,400 - SM_b20966 0.59 -0.2
1,195,441 + SM_b20966 0.62 -2.6
1,195,441 + SM_b20966 0.62 -1.3
1,195,441 + SM_b20966 0.62 -1.9
1,195,634 + SM_b20966 0.72 +1.8
1,195,634 + SM_b20966 0.72 +0.1
1,195,635 - SM_b20966 0.72 +0.4
1,195,697 - SM_b20966 0.75 -0.9
1,195,697 - SM_b20966 0.75 +1.7
1,195,744 + SM_b20966 0.77 -0.2
1,195,745 - SM_b20966 0.77 -1.7
1,195,745 - SM_b20966 0.77 +0.6
1,195,745 - SM_b20966 0.77 -0.5
1,195,750 + SM_b20966 0.77 -0.4
1,195,751 - SM_b20966 0.78 +2.0
1,195,771 + +1.6
1,195,772 - SM_b20966 0.79 -1.6
1,195,801 + SM_b20966 0.80 +0.1
1,195,801 + SM_b20966 0.80 +0.3
1,195,801 + SM_b20966 0.80 -0.3
1,195,801 + SM_b20966 0.80 +0.4
1,195,801 + SM_b20966 0.80 -0.2
1,195,802 - SM_b20966 0.80 +1.8
1,195,802 - SM_b20966 0.80 -1.6
1,195,802 - SM_b20966 0.80 +1.6
1,195,802 - SM_b20966 0.80 -1.4
1,195,882 + SM_b20966 0.84 -2.7
1,195,883 - SM_b20966 0.84 -2.7
1,196,073 + -1.6
1,196,074 - +3.0
1,196,179 + +0.2
1,196,179 + +2.7
1,196,179 + -0.1
1,196,180 - -0.2
1,196,180 - +0.8
1,196,261 + -1.2
1,196,261 + -0.3
1,196,262 - +0.8
1,196,340 - +0.3
1,196,340 - -0.3
1,196,340 - -2.4
1,196,340 - -0.2
1,196,341 + +1.2
1,196,518 + SM_b20967 0.14 -1.3
1,196,521 + SM_b20967 0.14 -2.1
1,196,522 - SM_b20967 0.14 -0.1
1,196,522 - SM_b20967 0.14 +0.0
1,196,545 + SM_b20967 0.16 +2.5
1,196,660 + SM_b20967 0.27 +0.1
1,196,660 + SM_b20967 0.27 -1.1
1,196,660 + SM_b20967 0.27 -0.1
1,196,661 - SM_b20967 0.28 +2.5
1,196,661 - SM_b20967 0.28 +2.0
1,196,661 - SM_b20967 0.28 -0.8
1,196,662 + SM_b20967 0.28 -0.4
1,196,663 - SM_b20967 0.28 -1.7
1,196,759 - SM_b20967 0.37 -0.5
1,196,816 - SM_b20967 0.43 +0.1
1,196,921 - SM_b20967 0.53 -1.4
1,196,921 - SM_b20967 0.53 -0.2
1,196,921 - SM_b20967 0.53 -1.2
1,196,921 - SM_b20967 0.53 -0.6
1,196,953 + SM_b20967 0.56 +0.8
1,196,954 - SM_b20967 0.56 -4.6
1,197,143 + SM_b20967 0.74 -2.7
1,197,143 + SM_b20967 0.74 +0.1
1,197,144 - SM_b20967 0.74 +1.0
1,197,226 + SM_b20967 0.82 -0.1
1,197,227 - SM_b20967 0.82 +0.2
1,197,271 + SM_b20967 0.86 +0.1
1,197,467 + +0.1
1,197,467 + +1.7
1,197,540 + +0.2
1,197,540 + +2.0
1,197,632 + SM_b20968 0.12 +0.1
1,197,632 + SM_b20968 0.12 +0.5
1,197,632 + SM_b20968 0.12 +3.2
1,197,633 - SM_b20968 0.13 -4.4
1,197,633 - SM_b20968 0.13 +0.5
1,197,633 - SM_b20968 0.13 -1.7
1,198,080 - SM_b20968 0.39 -1.1
1,198,158 - SM_b20968 0.43 +0.2
1,198,271 + SM_b20968 0.50 +1.3

Or see this region's nucleotide sequence