Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20851

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20850 and SM_b20851 are separated by 247 nucleotidesSM_b20851 and SM_b20852 overlap by 4 nucleotides SM_b20850: SM_b20850 - L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) (from data), at 1,253,180 to 1,254,316 _b20850 SM_b20851: SM_b20851 - SorC family transcriptional regulator, at 1,254,564 to 1,255,544 _b20851 SM_b20852: SM_b20852 - sugar kinase, at 1,255,541 to 1,257,070 _b20852 Position (kb) 1254 1255 1256Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1253.567 kb on + strand, within SM_b20850at 1253.567 kb on + strand, within SM_b20850at 1253.567 kb on + strand, within SM_b20850at 1253.567 kb on + strand, within SM_b20850at 1253.567 kb on + strand, within SM_b20850at 1253.567 kb on + strand, within SM_b20850at 1253.568 kb on - strand, within SM_b20850at 1253.568 kb on - strand, within SM_b20850at 1253.568 kb on - strand, within SM_b20850at 1253.678 kb on - strand, within SM_b20850at 1254.130 kb on + strand, within SM_b20850at 1254.131 kb on - strand, within SM_b20850at 1254.131 kb on - strand, within SM_b20850at 1254.161 kb on + strand, within SM_b20850at 1254.161 kb on + strand, within SM_b20850at 1254.162 kb on - strand, within SM_b20850at 1254.162 kb on - strand, within SM_b20850at 1254.162 kb on - strand, within SM_b20850at 1254.314 kb on + strandat 1254.359 kb on - strandat 1254.359 kb on - strandat 1254.405 kb on + strandat 1254.405 kb on + strandat 1254.420 kb on + strandat 1254.420 kb on + strandat 1254.420 kb on + strandat 1254.421 kb on - strandat 1254.421 kb on - strandat 1255.049 kb on + strand, within SM_b20851at 1255.049 kb on + strand, within SM_b20851at 1255.049 kb on + strand, within SM_b20851at 1255.049 kb on + strand, within SM_b20851at 1255.050 kb on - strandat 1255.050 kb on - strand, within SM_b20851at 1255.054 kb on + strand, within SM_b20851at 1255.055 kb on - strand, within SM_b20851at 1255.096 kb on - strand, within SM_b20851at 1255.154 kb on + strand, within SM_b20851at 1255.154 kb on + strand, within SM_b20851at 1255.155 kb on - strand, within SM_b20851at 1255.207 kb on + strand, within SM_b20851at 1255.207 kb on + strand, within SM_b20851at 1255.208 kb on - strand, within SM_b20851at 1255.208 kb on - strand, within SM_b20851at 1255.395 kb on - strand, within SM_b20851at 1255.456 kb on + strandat 1255.544 kb on + strandat 1255.544 kb on + strandat 1255.545 kb on - strandat 1255.636 kb on + strandat 1255.636 kb on + strandat 1255.636 kb on + strandat 1255.644 kb on + strandat 1255.645 kb on - strandat 1255.645 kb on - strandat 1255.652 kb on - strandat 1255.745 kb on - strand, within SM_b20852at 1255.745 kb on - strand, within SM_b20852at 1255.745 kb on - strand, within SM_b20852at 1255.804 kb on + strand, within SM_b20852at 1255.804 kb on + strand, within SM_b20852at 1255.804 kb on + strand, within SM_b20852at 1255.804 kb on + strand, within SM_b20852at 1255.805 kb on - strand, within SM_b20852at 1255.805 kb on - strand, within SM_b20852at 1255.808 kb on + strand, within SM_b20852at 1255.809 kb on - strand, within SM_b20852at 1255.809 kb on - strand, within SM_b20852at 1255.954 kb on - strand, within SM_b20852at 1256.026 kb on + strand, within SM_b20852at 1256.027 kb on - strand, within SM_b20852at 1256.043 kb on + strand, within SM_b20852at 1256.044 kb on - strand, within SM_b20852at 1256.044 kb on - strand, within SM_b20852at 1256.044 kb on - strand, within SM_b20852at 1256.242 kb on + strand, within SM_b20852at 1256.245 kb on + strand, within SM_b20852at 1256.245 kb on + strand, within SM_b20852at 1256.246 kb on - strand, within SM_b20852at 1256.344 kb on + strand, within SM_b20852at 1256.345 kb on - strand, within SM_b20852at 1256.345 kb on - strand, within SM_b20852at 1256.354 kb on + strand, within SM_b20852at 1256.354 kb on + strand, within SM_b20852at 1256.355 kb on - strand, within SM_b20852at 1256.398 kb on + strand, within SM_b20852at 1256.398 kb on + strand, within SM_b20852at 1256.398 kb on + strand, within SM_b20852at 1256.399 kb on - strand, within SM_b20852at 1256.399 kb on - strand, within SM_b20852at 1256.399 kb on - strand, within SM_b20852at 1256.399 kb on - strand, within SM_b20852at 1256.496 kb on + strand, within SM_b20852at 1256.497 kb on - strand, within SM_b20852at 1256.532 kb on + strand, within SM_b20852at 1256.532 kb on + strand, within SM_b20852at 1256.532 kb on + strand, within SM_b20852at 1256.532 kb on + strand, within SM_b20852at 1256.533 kb on - strand, within SM_b20852at 1256.533 kb on - strand, within SM_b20852at 1256.533 kb on - strand, within SM_b20852

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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1,253,567 + SM_b20850 0.34 -0.3
1,253,567 + SM_b20850 0.34 +0.2
1,253,567 + SM_b20850 0.34 -1.0
1,253,567 + SM_b20850 0.34 -0.2
1,253,567 + SM_b20850 0.34 -0.2
1,253,567 + SM_b20850 0.34 +4.0
1,253,568 - SM_b20850 0.34 -3.6
1,253,568 - SM_b20850 0.34 +1.0
1,253,568 - SM_b20850 0.34 +0.8
1,253,678 - SM_b20850 0.44 -0.5
1,254,130 + SM_b20850 0.84 +1.5
1,254,131 - SM_b20850 0.84 -0.1
1,254,131 - SM_b20850 0.84 -1.6
1,254,161 + SM_b20850 0.86 +0.1
1,254,161 + SM_b20850 0.86 -2.7
1,254,162 - SM_b20850 0.86 +0.3
1,254,162 - SM_b20850 0.86 +0.2
1,254,162 - SM_b20850 0.86 -0.3
1,254,314 + -3.9
1,254,359 - +0.2
1,254,359 - +0.5
1,254,405 + +4.6
1,254,405 + +0.2
1,254,420 + -0.7
1,254,420 + -0.7
1,254,420 + -0.3
1,254,421 - +0.9
1,254,421 - -3.2
1,255,049 + SM_b20851 0.49 -0.3
1,255,049 + SM_b20851 0.49 +0.6
1,255,049 + SM_b20851 0.49 -3.3
1,255,049 + SM_b20851 0.49 +0.1
1,255,050 - +1.2
1,255,050 - SM_b20851 0.50 +1.1
1,255,054 + SM_b20851 0.50 +0.1
1,255,055 - SM_b20851 0.50 +1.1
1,255,096 - SM_b20851 0.54 +0.0
1,255,154 + SM_b20851 0.60 +0.2
1,255,154 + SM_b20851 0.60 +0.4
1,255,155 - SM_b20851 0.60 -0.3
1,255,207 + SM_b20851 0.66 +0.3
1,255,207 + SM_b20851 0.66 +1.2
1,255,208 - SM_b20851 0.66 -1.6
1,255,208 - SM_b20851 0.66 +1.4
1,255,395 - SM_b20851 0.85 +1.3
1,255,456 + -0.2
1,255,544 + -2.5
1,255,544 + -0.3
1,255,545 - +0.9
1,255,636 + -0.4
1,255,636 + -0.4
1,255,636 + -0.3
1,255,644 + +0.5
1,255,645 - +1.9
1,255,645 - +3.0
1,255,652 - -0.4
1,255,745 - SM_b20852 0.13 +0.1
1,255,745 - SM_b20852 0.13 +0.7
1,255,745 - SM_b20852 0.13 -0.8
1,255,804 + SM_b20852 0.17 +0.2
1,255,804 + SM_b20852 0.17 -0.2
1,255,804 + SM_b20852 0.17 +0.4
1,255,804 + SM_b20852 0.17 -3.7
1,255,805 - SM_b20852 0.17 +2.0
1,255,805 - SM_b20852 0.17 -0.1
1,255,808 + SM_b20852 0.17 -3.1
1,255,809 - SM_b20852 0.18 +0.9
1,255,809 - SM_b20852 0.18 +0.1
1,255,954 - SM_b20852 0.27 -1.8
1,256,026 + SM_b20852 0.32 -2.0
1,256,027 - SM_b20852 0.32 +0.7
1,256,043 + SM_b20852 0.33 +1.8
1,256,044 - SM_b20852 0.33 -0.3
1,256,044 - SM_b20852 0.33 +0.1
1,256,044 - SM_b20852 0.33 +1.0
1,256,242 + SM_b20852 0.46 +1.5
1,256,245 + SM_b20852 0.46 +1.9
1,256,245 + SM_b20852 0.46 +1.0
1,256,246 - SM_b20852 0.46 -0.8
1,256,344 + SM_b20852 0.52 -0.9
1,256,345 - SM_b20852 0.53 +1.1
1,256,345 - SM_b20852 0.53 +0.8
1,256,354 + SM_b20852 0.53 -0.1
1,256,354 + SM_b20852 0.53 +0.3
1,256,355 - SM_b20852 0.53 -1.1
1,256,398 + SM_b20852 0.56 -0.2
1,256,398 + SM_b20852 0.56 +0.8
1,256,398 + SM_b20852 0.56 -1.6
1,256,399 - SM_b20852 0.56 +1.2
1,256,399 - SM_b20852 0.56 -0.5
1,256,399 - SM_b20852 0.56 -3.5
1,256,399 - SM_b20852 0.56 -2.1
1,256,496 + SM_b20852 0.62 -2.9
1,256,497 - SM_b20852 0.62 +1.9
1,256,532 + SM_b20852 0.65 -3.3
1,256,532 + SM_b20852 0.65 +2.5
1,256,532 + SM_b20852 0.65 +0.1
1,256,532 + SM_b20852 0.65 +0.5
1,256,533 - SM_b20852 0.65 -2.9
1,256,533 - SM_b20852 0.65 -0.3
1,256,533 - SM_b20852 0.65 -4.0

Or see this region's nucleotide sequence