Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20748 and SM_b20749 are separated by 506 nucleotides SM_b20749 and SM_b20750 are separated by 19 nucleotides SM_b20750 and SM_b20751 are separated by 30 nucleotides
SM_b20748: SM_b20748 - glycosyltransferase, at 1,536,505 to 1,537,569
_b20748
SM_b20749: SM_b20749 - D-mannonate oxidoreductase, at 1,538,076 to 1,539,539
_b20749
SM_b20750: SM_b20750 - dehydrogenase, at 1,539,559 to 1,540,308
_b20750
SM_b20751: SM_b20751 - 3-hydroxyisobutyrate dehydrogenase, at 1,540,339 to 1,541,235
_b20751
Position (kb)
1538
1539
1540 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 1537.103 kb on + strand, within SM_b20748 at 1537.275 kb on - strand, within SM_b20748 at 1537.280 kb on + strand, within SM_b20748 at 1537.280 kb on + strand, within SM_b20748 at 1537.281 kb on - strand, within SM_b20748 at 1537.281 kb on - strand, within SM_b20748 at 1537.442 kb on - strand, within SM_b20748 at 1537.467 kb on - strand at 1537.514 kb on + strand at 1537.515 kb on - strand at 1537.867 kb on + strand at 1537.867 kb on + strand at 1537.867 kb on + strand at 1537.867 kb on + strand at 1537.867 kb on + strand at 1537.867 kb on + strand at 1537.867 kb on + strand at 1537.869 kb on + strand at 1537.869 kb on + strand at 1537.869 kb on + strand at 1537.931 kb on - strand at 1538.133 kb on + strand at 1538.134 kb on - strand at 1538.208 kb on + strand at 1538.209 kb on - strand at 1538.310 kb on + strand, within SM_b20749 at 1538.310 kb on + strand, within SM_b20749 at 1538.466 kb on + strand, within SM_b20749 at 1538.466 kb on + strand, within SM_b20749 at 1538.467 kb on - strand, within SM_b20749 at 1538.630 kb on + strand, within SM_b20749 at 1538.664 kb on - strand, within SM_b20749 at 1538.979 kb on + strand, within SM_b20749 at 1538.980 kb on - strand, within SM_b20749 at 1539.118 kb on - strand, within SM_b20749 at 1539.537 kb on + strand at 1540.015 kb on + strand, within SM_b20750 at 1540.018 kb on - strand, within SM_b20750 at 1540.235 kb on + strand at 1540.430 kb on + strand, within SM_b20751 at 1540.430 kb on + strand, within SM_b20751
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 1,537,103 + SM_b20748 0.56 +1.0 1,537,275 - SM_b20748 0.72 +0.1 1,537,280 + SM_b20748 0.73 -1.2 1,537,280 + SM_b20748 0.73 -1.3 1,537,281 - SM_b20748 0.73 -0.2 1,537,281 - SM_b20748 0.73 -1.5 1,537,442 - SM_b20748 0.88 +1.0 1,537,467 - +0.5 1,537,514 + -0.9 1,537,515 - -0.9 1,537,867 + -0.0 1,537,867 + -1.7 1,537,867 + +1.4 1,537,867 + -0.6 1,537,867 + -1.1 1,537,867 + +0.5 1,537,867 + -0.1 1,537,869 + +0.8 1,537,869 + -0.3 1,537,869 + +4.9 1,537,931 - -1.9 1,538,133 + -0.9 1,538,134 - +0.5 1,538,208 + +1.4 1,538,209 - +0.8 1,538,310 + SM_b20749 0.16 -3.4 1,538,310 + SM_b20749 0.16 -0.0 1,538,466 + SM_b20749 0.27 +0.5 1,538,466 + SM_b20749 0.27 -0.6 1,538,467 - SM_b20749 0.27 -4.0 1,538,630 + SM_b20749 0.38 -1.5 1,538,664 - SM_b20749 0.40 -3.3 1,538,979 + SM_b20749 0.62 -0.3 1,538,980 - SM_b20749 0.62 -2.4 1,539,118 - SM_b20749 0.71 -1.4 1,539,537 + -1.3 1,540,015 + SM_b20750 0.61 +0.8 1,540,018 - SM_b20750 0.61 +0.4 1,540,235 + +2.0 1,540,430 + SM_b20751 0.10 -2.1 1,540,430 + SM_b20751 0.10 +1.6
Or see this region's nucleotide sequence