Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20749

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20748 and SM_b20749 are separated by 506 nucleotidesSM_b20749 and SM_b20750 are separated by 19 nucleotidesSM_b20750 and SM_b20751 are separated by 30 nucleotides SM_b20748: SM_b20748 - glycosyltransferase, at 1,536,505 to 1,537,569 _b20748 SM_b20749: SM_b20749 - D-mannonate oxidoreductase, at 1,538,076 to 1,539,539 _b20749 SM_b20750: SM_b20750 - dehydrogenase, at 1,539,559 to 1,540,308 _b20750 SM_b20751: SM_b20751 - 3-hydroxyisobutyrate dehydrogenase, at 1,540,339 to 1,541,235 _b20751 Position (kb) 1538 1539 1540Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 1537.103 kb on + strand, within SM_b20748at 1537.275 kb on - strand, within SM_b20748at 1537.280 kb on + strand, within SM_b20748at 1537.280 kb on + strand, within SM_b20748at 1537.281 kb on - strand, within SM_b20748at 1537.281 kb on - strand, within SM_b20748at 1537.442 kb on - strand, within SM_b20748at 1537.467 kb on - strandat 1537.514 kb on + strandat 1537.515 kb on - strandat 1537.867 kb on + strandat 1537.867 kb on + strandat 1537.867 kb on + strandat 1537.867 kb on + strandat 1537.867 kb on + strandat 1537.867 kb on + strandat 1537.867 kb on + strandat 1537.869 kb on + strandat 1537.869 kb on + strandat 1537.869 kb on + strandat 1537.931 kb on - strandat 1538.133 kb on + strandat 1538.134 kb on - strandat 1538.208 kb on + strandat 1538.209 kb on - strandat 1538.310 kb on + strand, within SM_b20749at 1538.310 kb on + strand, within SM_b20749at 1538.466 kb on + strand, within SM_b20749at 1538.466 kb on + strand, within SM_b20749at 1538.467 kb on - strand, within SM_b20749at 1538.630 kb on + strand, within SM_b20749at 1538.664 kb on - strand, within SM_b20749at 1538.979 kb on + strand, within SM_b20749at 1538.980 kb on - strand, within SM_b20749at 1539.118 kb on - strand, within SM_b20749at 1539.537 kb on + strandat 1540.015 kb on + strand, within SM_b20750at 1540.018 kb on - strand, within SM_b20750at 1540.235 kb on + strandat 1540.430 kb on + strand, within SM_b20751at 1540.430 kb on + strand, within SM_b20751

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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1,537,103 + SM_b20748 0.56 +1.0
1,537,275 - SM_b20748 0.72 +0.1
1,537,280 + SM_b20748 0.73 -1.2
1,537,280 + SM_b20748 0.73 -1.3
1,537,281 - SM_b20748 0.73 -0.2
1,537,281 - SM_b20748 0.73 -1.5
1,537,442 - SM_b20748 0.88 +1.0
1,537,467 - +0.5
1,537,514 + -0.9
1,537,515 - -0.9
1,537,867 + -0.0
1,537,867 + -1.7
1,537,867 + +1.4
1,537,867 + -0.6
1,537,867 + -1.1
1,537,867 + +0.5
1,537,867 + -0.1
1,537,869 + +0.8
1,537,869 + -0.3
1,537,869 + +4.9
1,537,931 - -1.9
1,538,133 + -0.9
1,538,134 - +0.5
1,538,208 + +1.4
1,538,209 - +0.8
1,538,310 + SM_b20749 0.16 -3.4
1,538,310 + SM_b20749 0.16 -0.0
1,538,466 + SM_b20749 0.27 +0.5
1,538,466 + SM_b20749 0.27 -0.6
1,538,467 - SM_b20749 0.27 -4.0
1,538,630 + SM_b20749 0.38 -1.5
1,538,664 - SM_b20749 0.40 -3.3
1,538,979 + SM_b20749 0.62 -0.3
1,538,980 - SM_b20749 0.62 -2.4
1,539,118 - SM_b20749 0.71 -1.4
1,539,537 + -1.3
1,540,015 + SM_b20750 0.61 +0.8
1,540,018 - SM_b20750 0.61 +0.4
1,540,235 + +2.0
1,540,430 + SM_b20751 0.10 -2.1
1,540,430 + SM_b20751 0.10 +1.6

Or see this region's nucleotide sequence