Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20610

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20609 and SM_b20610 overlap by 14 nucleotidesSM_b20610 and SM_b20611 are separated by 112 nucleotides SM_b20609: SM_b20609 - two-component sensor histidine kinase, at 1,622,168 to 1,625,548 _b20609 SM_b20610: SM_b20610 - two-component response regulator protein, at 1,625,535 to 1,626,464 _b20610 SM_b20611: SM_b20611 - C4-dicarboxylate transporter DctA, at 1,626,577 to 1,627,902 _b20611 Position (kb) 1625 1626 1627Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1624.606 kb on + strand, within SM_b20609at 1624.606 kb on + strand, within SM_b20609at 1624.606 kb on + strand, within SM_b20609at 1624.606 kb on + strand, within SM_b20609at 1624.606 kb on + strand, within SM_b20609at 1624.730 kb on + strand, within SM_b20609at 1624.900 kb on + strand, within SM_b20609at 1624.901 kb on - strand, within SM_b20609at 1624.910 kb on + strand, within SM_b20609at 1625.050 kb on + strand, within SM_b20609at 1625.050 kb on + strand, within SM_b20609at 1625.050 kb on + strand, within SM_b20609at 1625.051 kb on - strand, within SM_b20609at 1625.283 kb on - strandat 1625.468 kb on + strandat 1625.468 kb on + strandat 1625.468 kb on + strandat 1625.572 kb on + strandat 1625.572 kb on + strandat 1625.573 kb on - strandat 1625.573 kb on - strandat 1625.573 kb on - strandat 1625.644 kb on + strand, within SM_b20610at 1625.882 kb on + strand, within SM_b20610at 1626.184 kb on - strand, within SM_b20610at 1626.184 kb on - strand, within SM_b20610at 1626.184 kb on - strand, within SM_b20610at 1626.210 kb on + strand, within SM_b20610at 1626.210 kb on + strand, within SM_b20610at 1626.210 kb on + strand, within SM_b20610at 1626.393 kb on + strandat 1626.393 kb on + strandat 1626.393 kb on + strandat 1626.393 kb on + strandat 1626.393 kb on + strandat 1626.393 kb on + strandat 1626.393 kb on + strandat 1626.393 kb on + strandat 1626.393 kb on + strandat 1626.393 kb on + strandat 1626.393 kb on + strandat 1626.393 kb on + strandat 1626.394 kb on - strandat 1626.394 kb on - strandat 1626.394 kb on - strandat 1626.394 kb on - strandat 1626.394 kb on - strandat 1626.579 kb on - strandat 1626.896 kb on + strand, within SM_b20611at 1626.950 kb on + strand, within SM_b20611at 1626.950 kb on + strand, within SM_b20611at 1626.950 kb on + strand, within SM_b20611at 1626.951 kb on - strand, within SM_b20611at 1626.951 kb on - strand, within SM_b20611at 1626.951 kb on - strand, within SM_b20611at 1626.954 kb on + strand, within SM_b20611at 1626.954 kb on + strand, within SM_b20611at 1626.954 kb on + strand, within SM_b20611at 1626.954 kb on + strand, within SM_b20611at 1626.955 kb on - strand, within SM_b20611at 1627.109 kb on + strand, within SM_b20611at 1627.142 kb on + strand, within SM_b20611at 1627.142 kb on + strand, within SM_b20611at 1627.194 kb on - strand, within SM_b20611at 1627.241 kb on + strand, within SM_b20611at 1627.241 kb on + strand, within SM_b20611at 1627.242 kb on - strand, within SM_b20611at 1627.242 kb on - strand, within SM_b20611at 1627.242 kb on - strand, within SM_b20611at 1627.242 kb on - strand, within SM_b20611at 1627.242 kb on - strand, within SM_b20611at 1627.242 kb on - strand, within SM_b20611

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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1,624,606 + SM_b20609 0.72 -0.1
1,624,606 + SM_b20609 0.72 -0.2
1,624,606 + SM_b20609 0.72 -1.7
1,624,606 + SM_b20609 0.72 +0.1
1,624,606 + SM_b20609 0.72 -4.1
1,624,730 + SM_b20609 0.76 -0.3
1,624,900 + SM_b20609 0.81 -3.0
1,624,901 - SM_b20609 0.81 -0.2
1,624,910 + SM_b20609 0.81 +0.0
1,625,050 + SM_b20609 0.85 -0.4
1,625,050 + SM_b20609 0.85 -1.3
1,625,050 + SM_b20609 0.85 -0.5
1,625,051 - SM_b20609 0.85 -0.1
1,625,283 - -2.4
1,625,468 + +0.1
1,625,468 + -2.5
1,625,468 + +0.3
1,625,572 + +0.0
1,625,572 + +0.9
1,625,573 - -0.2
1,625,573 - +0.6
1,625,573 - +1.2
1,625,644 + SM_b20610 0.12 -0.7
1,625,882 + SM_b20610 0.37 -1.8
1,626,184 - SM_b20610 0.70 -0.8
1,626,184 - SM_b20610 0.70 -0.2
1,626,184 - SM_b20610 0.70 -3.1
1,626,210 + SM_b20610 0.73 +0.5
1,626,210 + SM_b20610 0.73 -2.6
1,626,210 + SM_b20610 0.73 +0.4
1,626,393 + +0.6
1,626,393 + -2.0
1,626,393 + -0.4
1,626,393 + -0.3
1,626,393 + -0.8
1,626,393 + +0.6
1,626,393 + +0.2
1,626,393 + +0.5
1,626,393 + -0.8
1,626,393 + -0.9
1,626,393 + +0.7
1,626,393 + -0.8
1,626,394 - -1.5
1,626,394 - -2.7
1,626,394 - +0.9
1,626,394 - +1.5
1,626,394 - -0.5
1,626,579 - +1.2
1,626,896 + SM_b20611 0.24 +1.6
1,626,950 + SM_b20611 0.28 +0.4
1,626,950 + SM_b20611 0.28 -0.2
1,626,950 + SM_b20611 0.28 +0.1
1,626,951 - SM_b20611 0.28 -2.5
1,626,951 - SM_b20611 0.28 +0.7
1,626,951 - SM_b20611 0.28 +0.1
1,626,954 + SM_b20611 0.28 +0.2
1,626,954 + SM_b20611 0.28 +2.0
1,626,954 + SM_b20611 0.28 +1.2
1,626,954 + SM_b20611 0.28 +1.5
1,626,955 - SM_b20611 0.29 -1.9
1,627,109 + SM_b20611 0.40 +0.7
1,627,142 + SM_b20611 0.43 +0.1
1,627,142 + SM_b20611 0.43 +2.6
1,627,194 - SM_b20611 0.47 -2.2
1,627,241 + SM_b20611 0.50 -0.4
1,627,241 + SM_b20611 0.50 -0.7
1,627,242 - SM_b20611 0.50 -3.4
1,627,242 - SM_b20611 0.50 -0.1
1,627,242 - SM_b20611 0.50 -2.5
1,627,242 - SM_b20611 0.50 +0.2
1,627,242 - SM_b20611 0.50 +0.1
1,627,242 - SM_b20611 0.50 -0.5

Or see this region's nucleotide sequence