Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20250 and SM_b20251 are separated by 71 nucleotides SM_b20251 and SM_b20252 overlap by 88 nucleotides SM_b20252 and SM_b20253 are separated by 46 nucleotides
SM_b20250: SM_b20250 - hypothetical protein, at 256,338 to 256,937
_b20250
SM_b20251: SM_b20251 - hypothetical protein, at 257,009 to 257,971
_b20251
SM_b20252: SM_b20252 - hypothetical protein, at 257,884 to 259,248
_b20252
SM_b20253: SM_b20253 - hypothetical protein, at 259,295 to 260,200
_b20253
Position (kb) 257
258
259
260 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 257.004 kb on + strand at 257.004 kb on + strand at 257.005 kb on - strand at 257.099 kb on - strand at 257.198 kb on - strand, within SM_b20251 at 257.525 kb on + strand, within SM_b20251 at 257.526 kb on - strand, within SM_b20251 at 257.526 kb on - strand, within SM_b20251 at 257.608 kb on - strand, within SM_b20251 at 257.667 kb on + strand, within SM_b20251 at 257.678 kb on + strand, within SM_b20251 at 257.678 kb on + strand, within SM_b20251 at 257.984 kb on + strand at 257.985 kb on - strand at 258.018 kb on - strand at 258.527 kb on + strand, within SM_b20252 at 258.749 kb on + strand, within SM_b20252 at 258.806 kb on + strand, within SM_b20252 at 258.858 kb on - strand, within SM_b20252 at 258.895 kb on + strand, within SM_b20252 at 258.895 kb on + strand, within SM_b20252 at 258.895 kb on + strand, within SM_b20252 at 258.895 kb on + strand, within SM_b20252 at 258.895 kb on + strand, within SM_b20252 at 258.895 kb on + strand, within SM_b20252 at 258.895 kb on + strand, within SM_b20252 at 258.895 kb on + strand, within SM_b20252 at 258.895 kb on + strand, within SM_b20252 at 258.896 kb on - strand, within SM_b20252 at 258.896 kb on - strand, within SM_b20252 at 258.896 kb on - strand, within SM_b20252 at 259.010 kb on + strand, within SM_b20252 at 259.010 kb on + strand, within SM_b20252 at 259.010 kb on + strand, within SM_b20252 at 259.011 kb on - strand, within SM_b20252 at 259.011 kb on - strand, within SM_b20252 at 259.011 kb on - strand, within SM_b20252 at 259.043 kb on + strand, within SM_b20252 at 259.317 kb on + strand at 259.317 kb on + strand at 259.479 kb on + strand, within SM_b20253 at 259.640 kb on + strand, within SM_b20253 at 259.640 kb on + strand, within SM_b20253 at 259.640 kb on + strand, within SM_b20253 at 259.640 kb on + strand, within SM_b20253 at 259.640 kb on + strand, within SM_b20253 at 259.640 kb on + strand, within SM_b20253 at 259.640 kb on + strand, within SM_b20253 at 259.641 kb on - strand, within SM_b20253 at 259.641 kb on - strand, within SM_b20253 at 259.641 kb on - strand, within SM_b20253 at 259.719 kb on + strand, within SM_b20253 at 259.719 kb on + strand, within SM_b20253 at 259.727 kb on + strand, within SM_b20253 at 259.727 kb on + strand, within SM_b20253 at 259.729 kb on + strand, within SM_b20253 at 259.730 kb on - strand, within SM_b20253 at 259.730 kb on - strand, within SM_b20253 at 259.730 kb on - strand, within SM_b20253 at 259.732 kb on - strand, within SM_b20253 at 259.751 kb on - strand, within SM_b20253 at 259.899 kb on + strand, within SM_b20253 at 259.900 kb on - strand, within SM_b20253 at 259.900 kb on - strand, within SM_b20253 at 259.948 kb on - strand, within SM_b20253 at 260.053 kb on + strand, within SM_b20253 at 260.152 kb on - strand at 260.200 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 257,004 + -1.6 257,004 + -1.7 257,005 - +0.8 257,099 - +0.4 257,198 - SM_b20251 0.20 +0.4 257,525 + SM_b20251 0.54 +1.1 257,526 - SM_b20251 0.54 +1.7 257,526 - SM_b20251 0.54 +0.4 257,608 - SM_b20251 0.62 -2.4 257,667 + SM_b20251 0.68 -1.8 257,678 + SM_b20251 0.69 +0.7 257,678 + SM_b20251 0.69 +0.3 257,984 + +0.1 257,985 - -0.9 258,018 - -4.6 258,527 + SM_b20252 0.47 +0.5 258,749 + SM_b20252 0.63 -1.7 258,806 + SM_b20252 0.68 +1.2 258,858 - SM_b20252 0.71 -2.3 258,895 + SM_b20252 0.74 +0.8 258,895 + SM_b20252 0.74 -3.2 258,895 + SM_b20252 0.74 +1.1 258,895 + SM_b20252 0.74 +0.6 258,895 + SM_b20252 0.74 +1.1 258,895 + SM_b20252 0.74 -0.1 258,895 + SM_b20252 0.74 +2.8 258,895 + SM_b20252 0.74 +0.5 258,895 + SM_b20252 0.74 -1.1 258,896 - SM_b20252 0.74 -0.2 258,896 - SM_b20252 0.74 -2.2 258,896 - SM_b20252 0.74 +1.7 259,010 + SM_b20252 0.82 +0.3 259,010 + SM_b20252 0.82 -4.4 259,010 + SM_b20252 0.82 -2.1 259,011 - SM_b20252 0.83 -0.6 259,011 - SM_b20252 0.83 +0.3 259,011 - SM_b20252 0.83 +0.1 259,043 + SM_b20252 0.85 -0.7 259,317 + +0.8 259,317 + +0.1 259,479 + SM_b20253 0.20 +1.1 259,640 + SM_b20253 0.38 -1.4 259,640 + SM_b20253 0.38 -1.2 259,640 + SM_b20253 0.38 +0.4 259,640 + SM_b20253 0.38 -0.6 259,640 + SM_b20253 0.38 +0.4 259,640 + SM_b20253 0.38 -3.9 259,640 + SM_b20253 0.38 +0.7 259,641 - SM_b20253 0.38 -1.8 259,641 - SM_b20253 0.38 +0.3 259,641 - SM_b20253 0.38 -0.4 259,719 + SM_b20253 0.47 -0.1 259,719 + SM_b20253 0.47 +1.3 259,727 + SM_b20253 0.48 +0.5 259,727 + SM_b20253 0.48 -0.2 259,729 + SM_b20253 0.48 +0.5 259,730 - SM_b20253 0.48 +0.4 259,730 - SM_b20253 0.48 +0.3 259,730 - SM_b20253 0.48 +0.1 259,732 - SM_b20253 0.48 +0.1 259,751 - SM_b20253 0.50 -0.5 259,899 + SM_b20253 0.67 +0.8 259,900 - SM_b20253 0.67 +2.3 259,900 - SM_b20253 0.67 -1.2 259,948 - SM_b20253 0.72 -2.3 260,053 + SM_b20253 0.84 -0.7 260,152 - -2.9 260,200 + +1.8
Or see this region's nucleotide sequence