Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20142

Experiment: L-Asparagine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b20141 and SM_b20142 overlap by 8 nucleotidesSM_b20142 and SM_b20143 are separated by 14 nucleotides SM_b20141: SM_b20141 - oligopeptide ABC transporter ATP-binding protein, at 154,809 to 156,455 _b20141 SM_b20142: SM_b20142 - oligopeptide ABC transporter permease, at 156,448 to 157,371 _b20142 SM_b20143: SM_b20143 - oligopeptide ABC transporter permease, at 157,386 to 158,300 _b20143 Position (kb) 156 157 158Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 155.603 kb on - strand, within SM_b20141at 155.704 kb on + strand, within SM_b20141at 155.705 kb on - strand, within SM_b20141at 155.726 kb on - strand, within SM_b20141at 156.254 kb on + strand, within SM_b20141at 156.367 kb on + strandat 156.367 kb on + strandat 156.367 kb on + strandat 156.368 kb on - strandat 156.599 kb on + strand, within SM_b20142at 156.599 kb on + strand, within SM_b20142at 156.599 kb on + strand, within SM_b20142at 156.695 kb on + strand, within SM_b20142at 156.695 kb on + strand, within SM_b20142at 156.917 kb on + strand, within SM_b20142at 156.917 kb on + strand, within SM_b20142at 156.922 kb on + strand, within SM_b20142at 156.922 kb on + strand, within SM_b20142at 156.922 kb on + strand, within SM_b20142at 156.923 kb on - strand, within SM_b20142at 157.243 kb on + strand, within SM_b20142at 157.244 kb on - strand, within SM_b20142at 157.244 kb on - strand, within SM_b20142at 157.244 kb on - strand, within SM_b20142at 157.417 kb on + strandat 157.417 kb on + strandat 157.551 kb on - strand, within SM_b20143at 158.232 kb on + strandat 158.232 kb on + strandat 158.233 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
remove
155,603 - SM_b20141 0.48 +0.0
155,704 + SM_b20141 0.54 +2.6
155,705 - SM_b20141 0.54 +0.3
155,726 - SM_b20141 0.56 -1.4
156,254 + SM_b20141 0.88 -2.4
156,367 + +2.3
156,367 + +0.3
156,367 + +0.3
156,368 - -1.8
156,599 + SM_b20142 0.16 -0.7
156,599 + SM_b20142 0.16 -1.4
156,599 + SM_b20142 0.16 +1.0
156,695 + SM_b20142 0.27 -1.6
156,695 + SM_b20142 0.27 -0.9
156,917 + SM_b20142 0.51 +1.1
156,917 + SM_b20142 0.51 +0.3
156,922 + SM_b20142 0.51 -4.0
156,922 + SM_b20142 0.51 -0.4
156,922 + SM_b20142 0.51 -1.4
156,923 - SM_b20142 0.51 -0.2
157,243 + SM_b20142 0.86 +1.1
157,244 - SM_b20142 0.86 +0.2
157,244 - SM_b20142 0.86 +2.1
157,244 - SM_b20142 0.86 -1.2
157,417 + -0.7
157,417 + +0.6
157,551 - SM_b20143 0.18 -0.3
158,232 + +0.2
158,232 + +1.5
158,233 - -3.1

Or see this region's nucleotide sequence