Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS17950 and HSERO_RS17955 are separated by 724 nucleotides HSERO_RS17955 and HSERO_RS17960 are separated by 27 nucleotides HSERO_RS17960 and HSERO_RS17965 are separated by 4 nucleotides
HSERO_RS17950: HSERO_RS17950 - hypothetical protein, at 4,122,372 to 4,122,797
_RS17950
HSERO_RS17955: HSERO_RS17955 - beta-lactamase, at 4,123,522 to 4,124,352
_RS17955
HSERO_RS17960: HSERO_RS17960 - hypothetical protein, at 4,124,380 to 4,124,706
_RS17960
HSERO_RS17965: HSERO_RS17965 - ABC-type sugar transport system protein, at 4,124,711 to 4,125,256
_RS17965
Position (kb) 4123
4124
4125 Strain fitness (log2 ratio) -1
0
1 at 4122.581 kb on + strand, within HSERO_RS17950 at 4122.705 kb on + strand, within HSERO_RS17950 at 4122.716 kb on + strand, within HSERO_RS17950 at 4122.739 kb on - strand, within HSERO_RS17950 at 4122.744 kb on - strand, within HSERO_RS17950 at 4122.778 kb on + strand at 4122.778 kb on + strand at 4122.778 kb on + strand at 4123.014 kb on - strand at 4123.026 kb on - strand at 4123.114 kb on + strand at 4123.122 kb on - strand at 4123.125 kb on + strand at 4123.128 kb on - strand at 4123.128 kb on - strand at 4123.128 kb on - strand at 4123.191 kb on + strand at 4123.239 kb on - strand at 4123.244 kb on - strand at 4123.258 kb on + strand at 4123.265 kb on + strand at 4123.432 kb on + strand at 4123.475 kb on + strand at 4123.491 kb on + strand at 4123.504 kb on - strand at 4123.546 kb on + strand at 4123.954 kb on + strand, within HSERO_RS17955 at 4124.012 kb on - strand, within HSERO_RS17955 at 4124.012 kb on - strand, within HSERO_RS17955 at 4124.012 kb on - strand, within HSERO_RS17955 at 4124.024 kb on + strand, within HSERO_RS17955 at 4124.050 kb on + strand, within HSERO_RS17955 at 4124.161 kb on + strand, within HSERO_RS17955 at 4124.283 kb on - strand at 4124.283 kb on - strand at 4124.386 kb on - strand at 4124.459 kb on + strand, within HSERO_RS17960 at 4124.459 kb on + strand, within HSERO_RS17960 at 4124.467 kb on - strand, within HSERO_RS17960 at 4124.615 kb on + strand, within HSERO_RS17960 at 4124.723 kb on + strand at 4124.750 kb on + strand at 4124.802 kb on + strand, within HSERO_RS17965 at 4124.911 kb on + strand, within HSERO_RS17965 at 4125.003 kb on + strand, within HSERO_RS17965 at 4125.006 kb on - strand, within HSERO_RS17965 at 4125.079 kb on + strand, within HSERO_RS17965 at 4125.082 kb on - strand, within HSERO_RS17965 at 4125.084 kb on + strand, within HSERO_RS17965 at 4125.134 kb on - strand, within HSERO_RS17965 at 4125.246 kb on + strand at 4125.246 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 4,122,581 + HSERO_RS17950 0.49 +0.8 4,122,705 + HSERO_RS17950 0.78 -0.2 4,122,716 + HSERO_RS17950 0.81 -0.2 4,122,739 - HSERO_RS17950 0.86 +0.2 4,122,744 - HSERO_RS17950 0.87 +0.5 4,122,778 + -0.5 4,122,778 + +0.1 4,122,778 + +0.6 4,123,014 - +1.0 4,123,026 - +0.6 4,123,114 + -0.6 4,123,122 - -0.3 4,123,125 + +0.7 4,123,128 - -0.2 4,123,128 - -0.4 4,123,128 - +0.7 4,123,191 + -0.2 4,123,239 - +0.3 4,123,244 - +0.2 4,123,258 + -0.6 4,123,265 + +0.1 4,123,432 + -0.1 4,123,475 + +0.2 4,123,491 + -0.3 4,123,504 - -0.0 4,123,546 + -0.7 4,123,954 + HSERO_RS17955 0.52 -1.7 4,124,012 - HSERO_RS17955 0.59 +0.5 4,124,012 - HSERO_RS17955 0.59 -1.4 4,124,012 - HSERO_RS17955 0.59 -0.2 4,124,024 + HSERO_RS17955 0.60 -0.3 4,124,050 + HSERO_RS17955 0.64 -0.3 4,124,161 + HSERO_RS17955 0.77 -0.1 4,124,283 - -0.1 4,124,283 - +0.2 4,124,386 - +0.9 4,124,459 + HSERO_RS17960 0.24 -0.3 4,124,459 + HSERO_RS17960 0.24 -0.5 4,124,467 - HSERO_RS17960 0.27 -0.1 4,124,615 + HSERO_RS17960 0.72 +0.4 4,124,723 + -1.2 4,124,750 + -0.0 4,124,802 + HSERO_RS17965 0.17 -1.2 4,124,911 + HSERO_RS17965 0.37 -0.5 4,125,003 + HSERO_RS17965 0.53 +1.0 4,125,006 - HSERO_RS17965 0.54 +0.1 4,125,079 + HSERO_RS17965 0.67 +0.6 4,125,082 - HSERO_RS17965 0.68 -1.7 4,125,084 + HSERO_RS17965 0.68 -0.2 4,125,134 - HSERO_RS17965 0.77 -0.0 4,125,246 + -0.4 4,125,246 + +0.4
Or see this region's nucleotide sequence