Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03898

Experiment: PYE with Carbenicillin 0.1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Carbenicillin 0.1 mg/ml
2,535,568	+		CCNA_02391	0.31	-1.9
2,535,570	+		CCNA_02391	0.31	-1.8
2,535,576	-		CCNA_02391	0.32	+1.0
2,535,577	-		CCNA_02391	0.32	-2.6
2,535,619	+		CCNA_02391	0.37	+1.8
2,535,623	-		CCNA_02391	0.38	-1.2
2,535,628	-		CCNA_02391	0.38	-1.9
2,535,637	+		CCNA_02391	0.39	-0.9
2,535,637	+		CCNA_02391	0.39	-2.6
2,535,637	+		CCNA_02391	0.39	-0.5
2,535,637	+		CCNA_02391	0.39	-2.2
2,535,645	-		CCNA_02391	0.41	+0.1
2,535,648	-		CCNA_02391	0.41	+0.4
2,535,694	+		CCNA_02391	0.47	+0.6
2,535,708	+		CCNA_02391	0.49	-1.1
2,535,708	+		CCNA_02391	0.49	-1.0
2,535,713	+		CCNA_02391	0.49	-1.8
2,535,713	+		CCNA_02391	0.49	+1.4
2,535,716	-		CCNA_02391	0.50	-1.5
2,535,718	+		CCNA_02391	0.50	-0.9
2,535,721	-		CCNA_02391	0.50	-0.0
2,535,721	-		CCNA_02391	0.50	-0.5
2,535,749	-		CCNA_02391	0.54	-2.5
2,535,793	+		CCNA_02391	0.59	-0.9
2,535,831	+		CCNA_02391	0.64	+0.8
2,535,893	+		CCNA_02391	0.72	-2.3
2,535,901	-		CCNA_02391	0.73	+1.6
2,535,923	-		CCNA_02391	0.76	-0.9
2,535,932	-		CCNA_02391	0.77	+0.4
2,536,003	+		CCNA_02391	0.86	-0.3
2,536,004	-		CCNA_02391	0.87	-0.4
2,536,018	+		CCNA_02391	0.88	+1.9
2,536,028	+		CCNA_02391	0.90	-0.1
2,536,028	+		CCNA_02391	0.90	+0.9
2,536,028	+		CCNA_02391	0.90	-0.9
2,536,036	-				-1.1
2,536,036	-				-1.2
2,536,036	-				-0.6
2,536,036	-				-1.7
2,536,058	-				-1.9
2,536,073	+				-0.9
2,536,090	+				-0.3
2,536,098	-				+2.9
2,536,153	-				-0.4
2,536,188	-		CCNA_02392	0.18	-0.3
2,536,239	+		CCNA_02392	0.31	-1.2
2,536,252	-		CCNA_02392	0.35	-0.1
2,536,271	-		CCNA_02392	0.40	+1.6
2,536,284	-		CCNA_02392	0.43	+0.5
2,536,284	-		CCNA_02392	0.43	+0.4
2,536,286	+		CCNA_02392	0.43	-0.8
2,536,311	+		CCNA_02392	0.50	+0.1
2,536,336	+		CCNA_02392	0.56	-1.9
2,536,355	-		CCNA_02392	0.61	-1.2
2,536,371	-		CCNA_02392	0.65	+0.3
2,536,398	-		CCNA_02392	0.72	-0.9
2,536,408	-		CCNA_02392	0.75	-1.0
2,536,415	-		CCNA_02392	0.77	-0.4
2,536,461	-		CCNA_02392	0.89	-2.4
2,536,468	+				+2.6
2,536,476	-				-2.8
2,536,476	-				-2.5
2,536,526	-				-1.0
2,536,526	-				+0.6
2,536,569	-				-2.8
2,536,595	-		CCNA_03898	0.14	-0.3
2,536,611	+		CCNA_03898	0.18	-1.0
2,536,630	+		CCNA_03898	0.22	-0.6
2,536,630	+		CCNA_03898	0.22	-1.6
2,536,633	-		CCNA_03898	0.23	-0.4
2,536,635	+				+2.7
2,536,638	-		CCNA_03898	0.24	-0.1
2,536,663	+		CCNA_03898	0.30	+0.0
2,536,806	+		CCNA_03898	0.63	-0.6
2,536,811	+				+1.6
2,536,811	+		CCNA_03898	0.64	-0.3
2,536,811	+		CCNA_03898	0.64	-1.4
2,536,811	+		CCNA_03898	0.64	+1.1
2,536,811	+		CCNA_03898	0.64	+0.0
2,536,811	+		CCNA_03898	0.64	-0.6
2,536,811	+		CCNA_03898	0.64	-0.0
2,536,811	+		CCNA_03898	0.64	-0.2
2,536,811	+		CCNA_03898	0.64	-0.9
2,536,811	+		CCNA_03898	0.64	-0.4
2,536,812	-		CCNA_03898	0.64	+0.6
2,536,812	-		CCNA_03898	0.64	+0.7
2,536,816	+		CCNA_03898	0.65	-0.3
2,536,819	-		CCNA_03898	0.66	+1.1
2,536,819	-		CCNA_03898	0.66	+0.7
2,536,819	-		CCNA_03898	0.66	-0.2
2,536,819	-		CCNA_03898	0.66	+0.6
2,536,819	-		CCNA_03898	0.66	-0.4
2,536,824	-		CCNA_03898	0.67	-1.4
2,536,829	-		CCNA_03898	0.68	-2.1
2,536,835	-		CCNA_03898	0.69	-1.6
2,536,862	+		CCNA_03898	0.75	+1.6
2,536,872	+		CCNA_03898	0.78	-1.0
2,536,880	-		CCNA_03898	0.79	+0.6
2,536,880	-		CCNA_03898	0.79	-0.3
2,536,880	-		CCNA_03898	0.79	-2.2
2,536,927	+				-1.0
2,536,927	+				+0.1
2,536,935	-				-0.6
2,536,963	+				-0.0
2,536,963	+				-1.5
2,536,968	+				+0.2
2,536,971	-				+2.1
2,536,971	-				+0.9
2,536,971	-				+0.6
2,537,033	+				-1.6
2,537,036	-				-0.3
2,537,038	+				-0.4
2,537,046	-		CCNA_03881	0.11	-1.4
2,537,076	+		CCNA_03881	0.20	+0.3
2,537,123	+		CCNA_03881	0.33	-0.1
2,537,123	+		CCNA_03881	0.33	-0.6
2,537,125	+		CCNA_03881	0.34	-1.1
2,537,133	-		CCNA_03881	0.36	-2.1
2,537,158	-		CCNA_03881	0.44	-0.0
2,537,158	-		CCNA_03881	0.44	-1.1
2,537,166	+		CCNA_03881	0.46	-1.7
2,537,226	+		CCNA_03881	0.63	-0.4
2,537,226	+		CCNA_03881	0.63	-1.0
2,537,234	-		CCNA_03881	0.66	-1.0
2,537,272	-		CCNA_03881	0.77	-0.1
2,537,306	-		CCNA_03881	0.87	+1.4
2,537,322	+				-0.9
2,537,345	+				-0.7
2,537,345	+				-1.8
2,537,345	+				-1.5
2,537,345	+				-0.7
2,537,345	+				+3.7
2,537,345	+				-0.9
2,537,345	+				-2.0
2,537,345	+				-0.6
2,537,345	+				-0.3
2,537,353	-				-0.0
2,537,353	-				+0.3
2,537,353	-				-0.2
2,537,353	-				-0.6
2,537,353	-				+0.2
2,537,353	-				-1.7
2,537,353	-				-0.1
2,537,353	-				-2.6
2,537,353	-				-2.3
2,537,353	-				+0.8
2,537,353	-				+0.6
2,537,353	-				+2.1
2,537,353	-				-1.0
2,537,353	-				+1.6
2,537,353	-				-0.4
2,537,353	-				-0.3
2,537,353	-				-2.0
2,537,353	-				-1.1
2,537,353	-				-0.0
2,537,353	-				-0.4
2,537,353	-				-0.4
2,537,353	-				-0.1
2,537,353	-				+0.6
2,537,375	-				+0.0
2,537,375	-				+0.4
2,537,387	+				+0.1
2,537,388	-				+0.8
2,537,395	+				+0.5
2,537,395	-				-0.1
2,537,403	-				-1.5
2,537,403	-				-0.2
2,537,420	-				-0.1
2,537,442	-				-0.3
2,537,451	+				-1.0
2,537,479	-		CCNA_02394	0.13	+0.7
2,537,491	+		CCNA_02394	0.15	-0.0
2,537,502	+		CCNA_02394	0.17	-0.2
2,537,510	-		CCNA_02394	0.18	-0.4
2,537,510	-		CCNA_02394	0.18	+0.1
2,537,512	+		CCNA_02394	0.18	-3.6
2,537,512	+		CCNA_02394	0.18	+0.3
2,537,512	+		CCNA_02394	0.18	+1.6
2,537,515	-		CCNA_02394	0.19	-0.6
2,537,515	-		CCNA_02394	0.19	-0.8
2,537,592	+		CCNA_02394	0.30	-1.4
2,537,595	-		CCNA_02394	0.31	-0.7
2,537,620	+		CCNA_02394	0.35	+0.3
2,537,639	+		CCNA_02394	0.38	+0.4
2,537,639	+		CCNA_02394	0.38	-0.4
2,537,647	-		CCNA_02394	0.39	-0.7
2,537,658	+		CCNA_02394	0.40	+0.8
2,537,667	-		CCNA_02394	0.42	-0.6
2,537,672	-		CCNA_02394	0.43	-1.6
2,537,672	-		CCNA_02394	0.43	+0.4
2,537,727	+		CCNA_02394	0.51	+0.3
2,537,729	+		CCNA_02394	0.51	-0.3
2,537,729	+		CCNA_02394	0.51	-0.0
2,537,729	+		CCNA_02394	0.51	+0.6
2,537,732	-		CCNA_02394	0.52	+0.4
2,537,732	-		CCNA_02394	0.52	+1.7
2,537,752	-		CCNA_02394	0.55	-0.0
2,537,752	-		CCNA_02394	0.55	+0.8
2,537,793	-		CCNA_02394	0.61	+1.3
2,537,816	-		CCNA_02394	0.64	+0.4
2,537,844	-		CCNA_02394	0.68	-0.5
2,537,893	-		CCNA_02394	0.76	+0.1
2,537,906	+		CCNA_02394	0.78	-0.3
2,537,909	+		CCNA_02394	0.78	-0.6
2,537,917	-		CCNA_02394	0.79	+0.2
2,537,925	+		CCNA_02394	0.81	+0.6
2,537,932	-		CCNA_02394	0.82	+0.6
2,537,932	-		CCNA_02394	0.82	+0.1
2,537,933	-		CCNA_02394	0.82	-0.3
2,537,933	-		CCNA_02394	0.82	+0.7
2,537,940	+		CCNA_02394	0.83	+0.2
2,537,945	+		CCNA_02394	0.84	+0.6
2,537,953	-		CCNA_02394	0.85	+0.7