Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01169

Experiment: PYE with Carbenicillin 0.1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Carbenicillin 0.1 mg/ml
1,287,012	-		CCNA_01168	0.36	+1.3
1,287,193	+		CCNA_01168	0.51	+0.4
1,287,246	-		CCNA_01168	0.55	-1.1
1,287,766	+				-0.9
1,287,790	+				+2.0
1,287,813	-				-1.5
1,287,830	+				-1.3
1,287,830	+				-1.9
1,287,837	+				-1.1
1,287,838	-				+0.8
1,287,838	-				+2.8
1,287,838	-				+0.5
1,287,877	+				-1.8
1,287,885	-				-0.3
1,287,885	-				-1.3
1,287,933	+				+1.0
1,287,947	-				-1.0
1,288,035	+		CCNA_01169	0.19	-1.8
1,288,057	+		CCNA_01169	0.22	-1.8
1,288,075	-		CCNA_01169	0.24	-1.5
1,288,089	-		CCNA_01169	0.26	-2.5
1,288,145	+		CCNA_01169	0.33	-1.1
1,288,148	-		CCNA_01169	0.33	-1.2
1,288,168	-		CCNA_01169	0.36	+0.7
1,288,190	+		CCNA_01169	0.38	+0.2
1,288,205	+		CCNA_01169	0.40	+1.8
1,288,237	-		CCNA_01169	0.44	-1.1
1,288,246	+				+1.0
1,288,307	+		CCNA_01169	0.53	-1.7
1,288,315	-		CCNA_01169	0.54	-2.9
1,288,327	-		CCNA_01169	0.55	-0.8
1,288,380	+		CCNA_01169	0.62	-1.2
1,288,380	+		CCNA_01169	0.62	-0.1
1,288,416	+		CCNA_01169	0.66	-0.9
1,288,416	+		CCNA_01169	0.66	-0.5
1,288,418	-		CCNA_01169	0.66	-1.2
1,288,522	+		CCNA_01169	0.79	-0.3
1,288,550	+		CCNA_01169	0.83	-2.6
1,288,550	+		CCNA_01169	0.83	-0.1
1,288,569	+		CCNA_01169	0.85	+1.0
1,288,569	+		CCNA_01169	0.85	+0.7
1,288,569	+		CCNA_01169	0.85	-2.0
1,288,620	+				-1.0
1,288,662	-				-0.2
1,288,669	+				-0.4
1,288,669	+				-2.0
1,288,679	+				-0.8
1,288,682	-				-0.6
1,288,716	+				-1.0
1,288,716	+				+0.6
1,288,716	+				-0.1
1,288,716	+				+0.5
1,288,801	-				+1.1
1,288,818	+				-0.8
1,288,818	+				-0.8
1,288,826	-				-1.9
1,288,826	-				-0.1
1,288,838	+				+0.5
1,288,839	+				-0.5
1,288,847	-				-1.6
1,288,847	-				+0.0
1,288,855	-				+1.7
1,288,871	-				+0.9
1,288,874	+				-0.7
1,288,894	+				-1.7
1,288,894	+				-1.8
1,288,894	+				-0.3
1,288,894	+				-0.4
1,288,894	+				+2.4
1,288,894	+				+1.3
1,288,894	+				+0.6
1,288,894	+				-0.9
1,288,894	+				-1.6
1,288,894	+				+1.4
1,288,894	+				-1.0
1,288,902	-				+1.3
1,288,902	-				-0.1
1,288,902	-				-2.0
1,288,902	-				-0.3
1,288,902	-				+1.7
1,288,902	-				-0.7
1,288,902	-				-1.4
1,288,909	+				+1.1
1,288,909	+				-1.7
1,288,933	+				-0.1
1,288,933	+				-0.6
1,288,941	-				-1.4
1,289,031	+		CCNA_01170	0.12	-0.9
1,289,036	+		CCNA_01170	0.12	-1.3
1,289,139	+		CCNA_01170	0.16	-0.9
1,289,139	+		CCNA_01170	0.16	-1.9
1,289,170	+		CCNA_01170	0.17	+0.0
1,289,170	+		CCNA_01170	0.17	+0.3
1,289,170	+		CCNA_01170	0.17	+0.3
1,289,178	-		CCNA_01170	0.18	-1.0
1,289,178	-		CCNA_01170	0.18	-0.1
1,289,178	-		CCNA_01170	0.18	-1.5
1,289,203	+		CCNA_01170	0.19	+0.2
1,289,211	-		CCNA_01170	0.19	-1.2
1,289,216	-		CCNA_01170	0.19	-2.3
1,289,216	-		CCNA_01170	0.19	-1.7
1,289,216	-		CCNA_01170	0.19	+0.4
1,289,232	+		CCNA_01170	0.20	-1.2
1,289,236	+		CCNA_01170	0.20	-0.4
1,289,275	+		CCNA_01170	0.21	+1.4
1,289,342	+		CCNA_01170	0.24	-0.8
1,289,342	+		CCNA_01170	0.24	-1.6
1,289,342	+		CCNA_01170	0.24	-2.2
1,289,350	-		CCNA_01170	0.24	-0.2
1,289,377	+		CCNA_01170	0.25	+0.9
1,289,492	+		CCNA_01170	0.30	-1.1
1,289,492	+		CCNA_01170	0.30	-2.1
1,289,492	+		CCNA_01170	0.30	-0.3
1,289,516	+		CCNA_01170	0.30	+0.3
1,289,553	+		CCNA_01170	0.32	-0.4
1,289,563	+		CCNA_01170	0.32	+2.4
1,289,609	-		CCNA_01170	0.34	-1.9
1,289,614	-		CCNA_01170	0.34	-0.4
1,289,629	+		CCNA_01170	0.35	-0.6
1,289,664	+		CCNA_01170	0.36	-1.2
1,289,672	-				+2.0
1,289,672	-		CCNA_01170	0.36	-1.8