Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS20480 and CA265_RS20485 overlap by 11 nucleotides CA265_RS20485 and CA265_RS20490 overlap by 4 nucleotides
CA265_RS20480: CA265_RS20480 - restriction endonuclease subunit S, at 5,065,361 to 5,066,758
_RS20480
CA265_RS20485: CA265_RS20485 - hypothetical protein, at 5,066,748 to 5,068,364
_RS20485
CA265_RS20490: CA265_RS20490 - hypothetical protein, at 5,068,361 to 5,069,899
_RS20490
Position (kb) 5066
5067
5068
5069 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5065.802 kb on - strand, within CA265_RS20480 at 5065.802 kb on - strand, within CA265_RS20480 at 5065.807 kb on - strand, within CA265_RS20480 at 5065.807 kb on - strand, within CA265_RS20480 at 5065.914 kb on - strand, within CA265_RS20480 at 5065.960 kb on + strand, within CA265_RS20480 at 5065.961 kb on - strand, within CA265_RS20480 at 5065.961 kb on - strand, within CA265_RS20480 at 5065.970 kb on + strand, within CA265_RS20480 at 5065.970 kb on + strand, within CA265_RS20480 at 5065.970 kb on + strand, within CA265_RS20480 at 5065.970 kb on + strand, within CA265_RS20480 at 5065.970 kb on + strand, within CA265_RS20480 at 5065.970 kb on + strand, within CA265_RS20480 at 5065.970 kb on + strand, within CA265_RS20480 at 5065.971 kb on - strand, within CA265_RS20480 at 5065.971 kb on - strand, within CA265_RS20480 at 5065.989 kb on + strand, within CA265_RS20480 at 5066.024 kb on + strand, within CA265_RS20480 at 5066.025 kb on - strand, within CA265_RS20480 at 5066.084 kb on - strand, within CA265_RS20480 at 5066.183 kb on - strand, within CA265_RS20480 at 5066.185 kb on + strand, within CA265_RS20480 at 5066.236 kb on + strand, within CA265_RS20480 at 5066.250 kb on + strand, within CA265_RS20480 at 5066.250 kb on + strand, within CA265_RS20480 at 5066.261 kb on - strand, within CA265_RS20480 at 5066.268 kb on + strand, within CA265_RS20480 at 5066.300 kb on + strand, within CA265_RS20480 at 5066.301 kb on - strand, within CA265_RS20480 at 5066.326 kb on + strand, within CA265_RS20480 at 5066.357 kb on - strand, within CA265_RS20480 at 5066.390 kb on - strand, within CA265_RS20480 at 5066.433 kb on - strand, within CA265_RS20480 at 5066.545 kb on - strand, within CA265_RS20480 at 5066.627 kb on - strand at 5066.658 kb on + strand at 5066.674 kb on - strand at 5066.779 kb on - strand at 5066.780 kb on + strand at 5066.831 kb on + strand at 5066.835 kb on - strand at 5066.844 kb on + strand at 5066.844 kb on + strand at 5066.894 kb on + strand at 5066.920 kb on + strand, within CA265_RS20485 at 5066.920 kb on + strand, within CA265_RS20485 at 5066.974 kb on + strand, within CA265_RS20485 at 5066.975 kb on - strand, within CA265_RS20485 at 5066.988 kb on + strand, within CA265_RS20485 at 5066.989 kb on - strand, within CA265_RS20485 at 5066.989 kb on - strand, within CA265_RS20485 at 5066.989 kb on - strand, within CA265_RS20485 at 5067.047 kb on - strand, within CA265_RS20485 at 5067.093 kb on + strand, within CA265_RS20485 at 5067.094 kb on - strand, within CA265_RS20485 at 5067.094 kb on - strand, within CA265_RS20485 at 5067.096 kb on + strand, within CA265_RS20485 at 5067.160 kb on + strand, within CA265_RS20485 at 5067.161 kb on - strand, within CA265_RS20485 at 5067.190 kb on + strand, within CA265_RS20485 at 5067.221 kb on + strand, within CA265_RS20485 at 5067.266 kb on - strand, within CA265_RS20485 at 5067.334 kb on + strand, within CA265_RS20485 at 5067.335 kb on - strand, within CA265_RS20485 at 5067.428 kb on + strand, within CA265_RS20485 at 5067.429 kb on - strand, within CA265_RS20485 at 5067.433 kb on + strand, within CA265_RS20485 at 5067.433 kb on + strand, within CA265_RS20485 at 5067.434 kb on - strand, within CA265_RS20485 at 5067.468 kb on - strand, within CA265_RS20485 at 5067.595 kb on + strand, within CA265_RS20485 at 5067.596 kb on - strand, within CA265_RS20485 at 5067.599 kb on + strand, within CA265_RS20485 at 5067.601 kb on + strand, within CA265_RS20485 at 5067.602 kb on - strand, within CA265_RS20485 at 5067.624 kb on + strand, within CA265_RS20485 at 5067.625 kb on - strand, within CA265_RS20485 at 5067.626 kb on + strand, within CA265_RS20485 at 5067.626 kb on + strand, within CA265_RS20485 at 5067.627 kb on - strand, within CA265_RS20485 at 5067.653 kb on - strand, within CA265_RS20485 at 5067.679 kb on + strand, within CA265_RS20485 at 5067.695 kb on - strand, within CA265_RS20485 at 5067.751 kb on + strand, within CA265_RS20485 at 5067.782 kb on - strand, within CA265_RS20485 at 5067.816 kb on + strand, within CA265_RS20485 at 5067.834 kb on - strand, within CA265_RS20485 at 5067.860 kb on - strand, within CA265_RS20485 at 5067.860 kb on - strand, within CA265_RS20485 at 5067.926 kb on - strand, within CA265_RS20485 at 5067.934 kb on - strand, within CA265_RS20485 at 5067.986 kb on - strand, within CA265_RS20485 at 5067.986 kb on - strand, within CA265_RS20485 at 5067.986 kb on - strand, within CA265_RS20485 at 5068.179 kb on - strand, within CA265_RS20485 at 5068.238 kb on + strand at 5068.238 kb on + strand at 5068.239 kb on - strand at 5068.239 kb on - strand at 5068.348 kb on + strand at 5068.348 kb on + strand at 5068.348 kb on + strand at 5068.383 kb on + strand at 5068.441 kb on + strand at 5068.441 kb on + strand at 5068.442 kb on - strand at 5068.445 kb on - strand at 5068.452 kb on + strand at 5068.481 kb on - strand at 5068.500 kb on + strand at 5068.544 kb on - strand, within CA265_RS20490 at 5068.555 kb on - strand, within CA265_RS20490 at 5068.603 kb on + strand, within CA265_RS20490 at 5068.667 kb on - strand, within CA265_RS20490 at 5068.676 kb on + strand, within CA265_RS20490 at 5068.677 kb on - strand, within CA265_RS20490 at 5068.677 kb on - strand, within CA265_RS20490 at 5068.805 kb on - strand, within CA265_RS20490 at 5068.805 kb on - strand, within CA265_RS20490 at 5068.805 kb on - strand, within CA265_RS20490 at 5068.814 kb on - strand, within CA265_RS20490 at 5068.831 kb on - strand, within CA265_RS20490 at 5068.850 kb on + strand, within CA265_RS20490 at 5069.017 kb on + strand, within CA265_RS20490 at 5069.021 kb on - strand, within CA265_RS20490 at 5069.034 kb on + strand, within CA265_RS20490 at 5069.062 kb on - strand, within CA265_RS20490 at 5069.130 kb on + strand, within CA265_RS20490 at 5069.131 kb on - strand, within CA265_RS20490 at 5069.199 kb on + strand, within CA265_RS20490 at 5069.200 kb on - strand, within CA265_RS20490 at 5069.274 kb on + strand, within CA265_RS20490 at 5069.308 kb on - strand, within CA265_RS20490 at 5069.314 kb on - strand, within CA265_RS20490 at 5069.324 kb on - strand, within CA265_RS20490 at 5069.343 kb on + strand, within CA265_RS20490
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 5,065,802 - CA265_RS20480 0.32 +0.1 5,065,802 - CA265_RS20480 0.32 +0.0 5,065,807 - CA265_RS20480 0.32 -0.3 5,065,807 - CA265_RS20480 0.32 +0.3 5,065,914 - CA265_RS20480 0.40 -0.6 5,065,960 + CA265_RS20480 0.43 +0.1 5,065,961 - CA265_RS20480 0.43 -0.4 5,065,961 - CA265_RS20480 0.43 -0.7 5,065,970 + CA265_RS20480 0.44 +0.0 5,065,970 + CA265_RS20480 0.44 +0.1 5,065,970 + CA265_RS20480 0.44 +0.3 5,065,970 + CA265_RS20480 0.44 +0.3 5,065,970 + CA265_RS20480 0.44 -1.3 5,065,970 + CA265_RS20480 0.44 +1.1 5,065,970 + CA265_RS20480 0.44 +0.2 5,065,971 - CA265_RS20480 0.44 +0.3 5,065,971 - CA265_RS20480 0.44 +0.4 5,065,989 + CA265_RS20480 0.45 -0.1 5,066,024 + CA265_RS20480 0.47 -0.3 5,066,025 - CA265_RS20480 0.47 -0.0 5,066,084 - CA265_RS20480 0.52 +0.5 5,066,183 - CA265_RS20480 0.59 -0.3 5,066,185 + CA265_RS20480 0.59 +0.4 5,066,236 + CA265_RS20480 0.63 -0.2 5,066,250 + CA265_RS20480 0.64 -0.0 5,066,250 + CA265_RS20480 0.64 +0.1 5,066,261 - CA265_RS20480 0.64 -1.4 5,066,268 + CA265_RS20480 0.65 +1.5 5,066,300 + CA265_RS20480 0.67 -0.6 5,066,301 - CA265_RS20480 0.67 -0.1 5,066,326 + CA265_RS20480 0.69 -0.1 5,066,357 - CA265_RS20480 0.71 +0.7 5,066,390 - CA265_RS20480 0.74 -1.1 5,066,433 - CA265_RS20480 0.77 -0.5 5,066,545 - CA265_RS20480 0.85 +0.1 5,066,627 - -0.3 5,066,658 + -1.4 5,066,674 - -1.9 5,066,779 - -1.1 5,066,780 + +1.1 5,066,831 + +0.2 5,066,835 - +0.3 5,066,844 + +0.3 5,066,844 + +0.1 5,066,894 + +1.0 5,066,920 + CA265_RS20485 0.11 -0.3 5,066,920 + CA265_RS20485 0.11 -0.2 5,066,974 + CA265_RS20485 0.14 -0.4 5,066,975 - CA265_RS20485 0.14 -0.9 5,066,988 + CA265_RS20485 0.15 -1.2 5,066,989 - CA265_RS20485 0.15 -1.4 5,066,989 - CA265_RS20485 0.15 -0.7 5,066,989 - CA265_RS20485 0.15 +0.1 5,067,047 - CA265_RS20485 0.18 +1.3 5,067,093 + CA265_RS20485 0.21 -1.0 5,067,094 - CA265_RS20485 0.21 +0.8 5,067,094 - CA265_RS20485 0.21 +0.2 5,067,096 + CA265_RS20485 0.22 +1.9 5,067,160 + CA265_RS20485 0.25 -1.1 5,067,161 - CA265_RS20485 0.26 -0.1 5,067,190 + CA265_RS20485 0.27 -0.9 5,067,221 + CA265_RS20485 0.29 +1.9 5,067,266 - CA265_RS20485 0.32 -0.5 5,067,334 + CA265_RS20485 0.36 -0.8 5,067,335 - CA265_RS20485 0.36 +0.3 5,067,428 + CA265_RS20485 0.42 -0.2 5,067,429 - CA265_RS20485 0.42 +0.0 5,067,433 + CA265_RS20485 0.42 +0.6 5,067,433 + CA265_RS20485 0.42 +0.7 5,067,434 - CA265_RS20485 0.42 +0.0 5,067,468 - CA265_RS20485 0.45 +0.6 5,067,595 + CA265_RS20485 0.52 +1.1 5,067,596 - CA265_RS20485 0.52 -0.6 5,067,599 + CA265_RS20485 0.53 -1.9 5,067,601 + CA265_RS20485 0.53 -1.0 5,067,602 - CA265_RS20485 0.53 -0.0 5,067,624 + CA265_RS20485 0.54 +0.7 5,067,625 - CA265_RS20485 0.54 +1.1 5,067,626 + CA265_RS20485 0.54 -2.7 5,067,626 + CA265_RS20485 0.54 -0.1 5,067,627 - CA265_RS20485 0.54 -0.4 5,067,653 - CA265_RS20485 0.56 +0.5 5,067,679 + CA265_RS20485 0.58 -0.4 5,067,695 - CA265_RS20485 0.59 +0.1 5,067,751 + CA265_RS20485 0.62 -1.6 5,067,782 - CA265_RS20485 0.64 +1.5 5,067,816 + CA265_RS20485 0.66 +1.1 5,067,834 - CA265_RS20485 0.67 +0.5 5,067,860 - CA265_RS20485 0.69 -0.0 5,067,860 - CA265_RS20485 0.69 +0.0 5,067,926 - CA265_RS20485 0.73 +0.1 5,067,934 - CA265_RS20485 0.73 -0.1 5,067,986 - CA265_RS20485 0.77 -1.4 5,067,986 - CA265_RS20485 0.77 +0.8 5,067,986 - CA265_RS20485 0.77 +0.2 5,068,179 - CA265_RS20485 0.88 +0.6 5,068,238 + +0.2 5,068,238 + -0.2 5,068,239 - -0.4 5,068,239 - +0.2 5,068,348 + -0.1 5,068,348 + -1.0 5,068,348 + +0.0 5,068,383 + +0.9 5,068,441 + -2.8 5,068,441 + -1.7 5,068,442 - +0.3 5,068,445 - +0.9 5,068,452 + -0.4 5,068,481 - +0.2 5,068,500 + -0.6 5,068,544 - CA265_RS20490 0.12 +1.1 5,068,555 - CA265_RS20490 0.13 +0.3 5,068,603 + CA265_RS20490 0.16 +2.8 5,068,667 - CA265_RS20490 0.20 +1.2 5,068,676 + CA265_RS20490 0.20 +0.4 5,068,677 - CA265_RS20490 0.21 +0.8 5,068,677 - CA265_RS20490 0.21 -0.3 5,068,805 - CA265_RS20490 0.29 +0.9 5,068,805 - CA265_RS20490 0.29 -0.2 5,068,805 - CA265_RS20490 0.29 +0.1 5,068,814 - CA265_RS20490 0.29 +0.4 5,068,831 - CA265_RS20490 0.31 -1.6 5,068,850 + CA265_RS20490 0.32 +0.3 5,069,017 + CA265_RS20490 0.43 -0.6 5,069,021 - CA265_RS20490 0.43 -0.4 5,069,034 + CA265_RS20490 0.44 -0.1 5,069,062 - CA265_RS20490 0.46 -0.8 5,069,130 + CA265_RS20490 0.50 -1.2 5,069,131 - CA265_RS20490 0.50 +0.3 5,069,199 + CA265_RS20490 0.54 +0.5 5,069,200 - CA265_RS20490 0.55 -1.8 5,069,274 + CA265_RS20490 0.59 +0.6 5,069,308 - CA265_RS20490 0.62 +1.0 5,069,314 - CA265_RS20490 0.62 -0.1 5,069,324 - CA265_RS20490 0.63 -0.0 5,069,343 + CA265_RS20490 0.64 +0.3
Or see this region's nucleotide sequence