Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS18535

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS18530 and CA265_RS18535 are separated by 33 nucleotidesCA265_RS18535 and CA265_RS18540 are separated by 40 nucleotides CA265_RS18530: CA265_RS18530 - aspartate aminotransferase family protein, at 4,606,649 to 4,607,797 _RS18530 CA265_RS18535: CA265_RS18535 - four helix bundle protein, at 4,607,831 to 4,608,202 _RS18535 CA265_RS18540: CA265_RS18540 - N-succinylglutamylphosphate reductase (EC 1.2.1.38) (from data), at 4,608,243 to 4,609,223 _RS18540 Position (kb) 4607 4608 4609Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4606.865 kb on + strand, within CA265_RS18530at 4607.044 kb on + strand, within CA265_RS18530at 4607.092 kb on + strand, within CA265_RS18530at 4607.143 kb on + strand, within CA265_RS18530at 4607.162 kb on + strand, within CA265_RS18530at 4607.178 kb on + strand, within CA265_RS18530at 4607.191 kb on - strand, within CA265_RS18530at 4607.586 kb on - strand, within CA265_RS18530at 4607.627 kb on + strand, within CA265_RS18530at 4607.809 kb on + strandat 4607.809 kb on + strandat 4607.810 kb on - strandat 4607.811 kb on + strandat 4607.877 kb on - strand, within CA265_RS18535at 4607.910 kb on - strand, within CA265_RS18535at 4607.957 kb on + strand, within CA265_RS18535at 4607.972 kb on + strand, within CA265_RS18535at 4608.096 kb on - strand, within CA265_RS18535at 4608.151 kb on + strand, within CA265_RS18535at 4608.152 kb on - strand, within CA265_RS18535at 4608.156 kb on - strand, within CA265_RS18535at 4608.207 kb on + strandat 4608.240 kb on + strandat 4608.470 kb on + strand, within CA265_RS18540at 4608.505 kb on - strand, within CA265_RS18540at 4608.671 kb on + strand, within CA265_RS18540at 4608.734 kb on + strand, within CA265_RS18540at 4608.804 kb on - strand, within CA265_RS18540at 4608.957 kb on - strand, within CA265_RS18540at 4609.028 kb on + strand, within CA265_RS18540at 4609.082 kb on + strand, within CA265_RS18540at 4609.083 kb on - strand, within CA265_RS18540at 4609.086 kb on + strand, within CA265_RS18540at 4609.099 kb on - strand, within CA265_RS18540

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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4,606,865 + CA265_RS18530 0.19 -1.1
4,607,044 + CA265_RS18530 0.34 -2.1
4,607,092 + CA265_RS18530 0.39 -3.2
4,607,143 + CA265_RS18530 0.43 -2.1
4,607,162 + CA265_RS18530 0.45 -1.1
4,607,178 + CA265_RS18530 0.46 -1.2
4,607,191 - CA265_RS18530 0.47 -2.5
4,607,586 - CA265_RS18530 0.82 -1.8
4,607,627 + CA265_RS18530 0.85 -1.6
4,607,809 + -2.5
4,607,809 + -3.8
4,607,810 - +0.9
4,607,811 + -3.0
4,607,877 - CA265_RS18535 0.12 -0.2
4,607,910 - CA265_RS18535 0.21 -0.2
4,607,957 + CA265_RS18535 0.34 -1.5
4,607,972 + CA265_RS18535 0.38 -4.4
4,608,096 - CA265_RS18535 0.71 -1.1
4,608,151 + CA265_RS18535 0.86 -4.2
4,608,152 - CA265_RS18535 0.86 +1.2
4,608,156 - CA265_RS18535 0.87 -0.8
4,608,207 + -3.3
4,608,240 + -0.8
4,608,470 + CA265_RS18540 0.23 -1.6
4,608,505 - CA265_RS18540 0.27 -0.8
4,608,671 + CA265_RS18540 0.44 -1.7
4,608,734 + CA265_RS18540 0.50 -1.9
4,608,804 - CA265_RS18540 0.57 -0.8
4,608,957 - CA265_RS18540 0.73 +0.8
4,609,028 + CA265_RS18540 0.80 -1.6
4,609,082 + CA265_RS18540 0.86 -0.8
4,609,083 - CA265_RS18540 0.86 -2.7
4,609,086 + CA265_RS18540 0.86 -2.2
4,609,099 - CA265_RS18540 0.87 -2.6

Or see this region's nucleotide sequence