Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3565

Experiment: (+)-Arabinogalactan (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	(+)-Arabinogalactan (C)
4,611,593	+				-1.7
4,611,631	-				-1.6
4,611,669	+				-2.2
4,611,711	+				-0.9
4,611,712	-				-4.0
4,611,712	-				-0.9
4,611,714	+				-1.1
4,611,729	-				-0.5
4,611,736	-				+0.5
4,611,740	-				-1.7
4,611,749	-				-0.8
4,611,757	-				-1.0
4,611,771	-				+0.3
4,611,775	+				-0.1
4,611,775	+				-0.4
4,611,776	-				-0.5
4,611,805	-				-1.3
4,611,843	-				-0.8
4,611,870	-				-0.5
4,611,920	-				-0.6
4,611,920	-				-1.2
4,611,922	+				-2.8
4,611,931	+				+0.9
4,611,990	-				-1.1
4,612,012	+				-0.4
4,612,012	+				-2.5
4,612,013	-				-0.1
4,612,013	-				-0.1
4,612,102	+				-0.3
4,612,121	+				-3.6
4,612,122	-				-1.6
4,612,165	-				-0.7
4,612,169	+				-1.7
4,612,176	+				-0.1
4,612,176	+				+1.5
4,612,234	-				-1.0
4,612,278	-				-1.8
4,612,278	-				-0.5
4,612,321	+				-1.1
4,612,375	-				-1.4
4,612,375	-				-1.0
4,612,378	+				-1.3
4,612,379	-				-1.3
4,612,412	+				-2.6
4,612,412	+				-1.3
4,612,413	-				-1.2
4,612,413	-				-0.6
4,612,419	+				+0.6
4,612,443	+				-1.3
4,612,496	-				-0.6
4,612,603	+				-2.2
4,612,604	-				-0.8
4,612,610	-				-0.6
4,612,612	+				-0.4
4,612,669	-				-2.3
4,612,720	-				-0.9
4,612,725	-				-0.0
4,612,731	-				-0.8
4,612,731	-				-0.7
4,612,830	+				-0.2
4,612,831	-				-1.0
4,612,831	-				+0.2
4,612,831	-				+1.5
4,612,841	+		BT3565	0.10	+0.1
4,612,938	-				-0.1
4,612,997	-		BT3565	0.16	-0.2
4,613,005	+		BT3565	0.16	-1.6
4,613,005	+		BT3565	0.16	-1.9
4,613,006	-		BT3565	0.16	+0.1
4,613,015	+		BT3565	0.17	-1.1
4,613,016	-		BT3565	0.17	-1.2
4,613,048	+		BT3565	0.18	-1.1
4,613,048	+		BT3565	0.18	-0.1
4,613,050	+		BT3565	0.18	-1.1
4,613,105	-		BT3565	0.20	-0.8
4,613,118	-		BT3565	0.21	-0.5
4,613,123	+		BT3565	0.21	-1.7
4,613,124	-		BT3565	0.21	-2.5
4,613,135	-		BT3565	0.22	-0.6
4,613,159	+		BT3565	0.22	-1.7
4,613,160	-		BT3565	0.22	-0.8
4,613,195	+		BT3565	0.24	-0.6
4,613,218	-		BT3565	0.25	-0.1
4,613,218	-		BT3565	0.25	-0.8
4,613,230	+		BT3565	0.25	-0.2
4,613,251	-		BT3565	0.26	-0.5
4,613,287	+		BT3565	0.27	-1.8
4,613,294	-		BT3565	0.28	-1.2
4,613,313	+		BT3565	0.28	-2.1
4,613,314	-		BT3565	0.28	-2.6
4,613,315	+		BT3565	0.29	-0.7
4,613,316	-		BT3565	0.29	-0.6
4,613,346	+		BT3565	0.30	-1.8
4,613,409	+		BT3565	0.32	-1.9
4,613,599	-		BT3565	0.40	-1.8
4,613,609	+		BT3565	0.40	-1.4
4,613,634	-		BT3565	0.41	-1.7
4,613,642	-		BT3565	0.41	-1.1
4,613,643	+		BT3565	0.41	-1.3
4,613,644	-		BT3565	0.41	-0.4
4,613,676	+		BT3565	0.43	-0.3
4,613,709	+		BT3565	0.44	-0.1
4,613,816	+		BT3565	0.48	-1.2
4,613,918	-		BT3565	0.52	-1.3
4,613,940	+		BT3565	0.53	+1.5
4,613,940	+		BT3565	0.53	+0.4
4,613,942	+		BT3565	0.53	-1.5
4,613,942	+		BT3565	0.53	-1.6
4,613,943	-		BT3565	0.53	-1.3
4,613,988	+		BT3565	0.55	-0.4
4,613,988	+		BT3565	0.55	-1.1
4,614,024	+		BT3565	0.56	-1.3
4,614,055	+		BT3565	0.57	+0.5
4,614,058	-		BT3565	0.58	-1.3
4,614,120	+		BT3565	0.60	-0.5
4,614,121	-		BT3565	0.60	-1.6
4,614,123	-		BT3565	0.60	-2.4
4,614,123	-		BT3565	0.60	-1.7
4,614,194	+		BT3565	0.63	-1.7
4,614,300	-		BT3565	0.67	-1.6
4,614,302	+		BT3565	0.67	-2.6
4,614,302	+		BT3565	0.67	-0.5
4,614,303	-		BT3565	0.67	-1.5
4,614,309	-		BT3565	0.67	-1.8
4,614,342	+		BT3565	0.69	-1.1
4,614,380	+		BT3565	0.70	-0.5
4,614,381	-		BT3565	0.70	-0.9
4,614,427	-		BT3565	0.72	-1.1
4,614,427	-		BT3565	0.72	-2.4
4,614,453	-		BT3565	0.73	-1.2
4,614,559	+		BT3565	0.77	-0.8
4,614,560	-		BT3565	0.77	-1.1
4,614,589	-		BT3565	0.78	-1.7
4,614,589	-		BT3565	0.78	-0.6
4,614,598	+		BT3565	0.79	-1.1
4,614,599	-		BT3565	0.79	-3.6
4,614,599	-		BT3565	0.79	+2.5
4,614,599	-		BT3565	0.79	-2.9
4,614,666	+		BT3565	0.81	-1.2
4,614,666	+		BT3565	0.81	-2.1
4,614,694	-		BT3565	0.82	-2.2
4,614,748	-		BT3565	0.84	-1.6
4,614,806	+		BT3565	0.87	-0.1
4,614,807	-		BT3565	0.87	-1.4
4,614,807	-		BT3565	0.87	-1.7
4,614,817	-		BT3565	0.87	-1.4
4,614,817	-		BT3565	0.87	-2.8
4,614,818	+		BT3565	0.87	-1.5
4,614,819	-		BT3565	0.87	-2.4
4,614,822	-		BT3565	0.87	-0.3
4,614,853	-		BT3565	0.89	-2.5
4,614,853	-		BT3565	0.89	-0.0
4,614,858	-		BT3565	0.89	-0.8
4,614,912	+				-2.6
4,614,913	-				-1.8
4,614,923	+				-0.5
4,614,925	+				-1.1
4,614,925	+				-0.1
4,614,937	-				-0.9
4,614,946	-				+0.1
4,614,957	-				+2.3
4,615,082	+				-0.4
4,615,083	-				-1.3
4,615,122	-				-1.7
4,615,144	-				-0.8
4,615,185	+				-1.0
4,615,186	-				-1.4
4,615,196	+				-0.4
4,615,220	+				-0.2
4,615,233	+				-0.4
4,615,234	-				-1.8
4,615,263	+				-1.6
4,615,280	-				-0.5
4,615,367	-		BT3566	0.14	-1.1
4,615,367	-		BT3566	0.14	-0.6
4,615,403	+		BT3566	0.17	-2.1
4,615,404	-		BT3566	0.17	-1.1
4,615,404	-		BT3566	0.17	-0.3
4,615,404	-		BT3566	0.17	-3.9
4,615,445	-		BT3566	0.20	-1.2
4,615,535	-		BT3566	0.27	-1.1
4,615,535	-		BT3566	0.27	-0.8
4,615,577	-		BT3566	0.30	-0.8
4,615,642	+		BT3566	0.34	-1.0
4,615,697	-		BT3566	0.38	+0.5
4,615,697	-		BT3566	0.38	+0.2
4,615,697	-		BT3566	0.38	+0.0
4,615,766	+		BT3566	0.43	+0.5
4,615,858	+		BT3566	0.50	+0.3
4,615,858	+		BT3566	0.50	-2.7
4,615,858	+		BT3566	0.50	-1.1
4,615,859	-		BT3566	0.50	-2.2
4,615,859	-		BT3566	0.50	-1.2
4,615,862	+		BT3566	0.50	-2.3
4,615,888	-		BT3566	0.52	-0.8
4,615,913	-		BT3566	0.54	-1.3
4,615,913	-		BT3566	0.54	-1.7
4,615,913	-		BT3566	0.54	-1.8
4,615,935	+		BT3566	0.56	-0.9
4,615,987	-		BT3566	0.60	-1.7
4,616,038	+		BT3566	0.63	-0.8
4,616,039	-		BT3566	0.63	-3.2
4,616,039	-		BT3566	0.63	-2.4
4,616,042	-		BT3566	0.64	-2.0
4,616,086	-		BT3566	0.67	-2.4