Experiment: (+)-Arabinogalactan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0375 and BT0376 are separated by 351 nucleotides BT0376 and BT0377 are separated by 6 nucleotides BT0377 and BT0378 are separated by 53 nucleotides
BT0375: BT0375 - integrase (NCBI ptt file), at 462,368 to 463,057
BT0375
BT0376: BT0376 - putative transcriptional regulator (NCBI ptt file), at 463,409 to 463,987
BT0376
BT0377: BT0377 - conserved hypothetical protein (NCBI ptt file), at 463,994 to 464,353
BT0377
BT0378: BT0378 - capsular polysaccharide biosynthesis protein capD (NCBI ptt file), at 464,407 to 466,332
BT0378
Position (kb) 463
464
465 Strain fitness (log2 ratio) -2
-1
0
1 at 462.998 kb on - strand at 463.099 kb on + strand at 463.107 kb on - strand at 463.107 kb on - strand at 463.253 kb on + strand at 463.276 kb on + strand at 463.296 kb on - strand at 463.296 kb on - strand at 463.352 kb on - strand at 463.491 kb on - strand, within BT0376 at 463.704 kb on - strand, within BT0376 at 463.921 kb on + strand, within BT0376 at 463.962 kb on + strand at 463.963 kb on - strand at 463.986 kb on - strand at 464.089 kb on - strand, within BT0377 at 464.148 kb on - strand, within BT0377 at 464.550 kb on + strand at 464.575 kb on - strand at 464.638 kb on - strand, within BT0378 at 464.948 kb on - strand, within BT0378 at 464.957 kb on + strand, within BT0378 at 464.958 kb on - strand, within BT0378 at 465.025 kb on - strand, within BT0378
Per-strain Table
Position Strand Gene LocusTag Fraction (+)-Arabinogalactan (C) remove 462,998 - -2.0 463,099 + +1.6 463,107 - -0.4 463,107 - -1.0 463,253 + -0.7 463,276 + -2.5 463,296 - +0.6 463,296 - -0.4 463,352 - -1.2 463,491 - BT0376 0.14 -1.6 463,704 - BT0376 0.51 -0.6 463,921 + BT0376 0.88 -1.7 463,962 + -0.9 463,963 - -0.3 463,986 - -2.2 464,089 - BT0377 0.26 +0.0 464,148 - BT0377 0.43 +0.0 464,550 + +0.6 464,575 - -0.1 464,638 - BT0378 0.12 +1.6 464,948 - BT0378 0.28 -0.1 464,957 + BT0378 0.29 -2.1 464,958 - BT0378 0.29 +0.7 465,025 - BT0378 0.32 +1.0
Or see this region's nucleotide sequence