Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3706

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3705 and Rru_A3706 are separated by 23 nucleotidesRru_A3706 and Rru_A3707 are separated by 84 nucleotides Rru_A3705: Rru_A3705 - Cell divisionFtsK/SpoIIIE (NCBI), at 4,253,397 to 4,255,946 _A3705 Rru_A3706: Rru_A3706 - Aminotransferase, class I and II (NCBI), at 4,255,970 to 4,257,352 _A3706 Rru_A3707: Rru_A3707 - Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 (NCBI), at 4,257,437 to 4,258,726 _A3707 Position (kb) 4255 4256 4257 4258Strain fitness (log2 ratio) -2 -1 0 1 2at 4256.092 kb on + strandat 4256.092 kb on + strandat 4256.092 kb on + strandat 4256.093 kb on - strandat 4256.093 kb on - strandat 4256.094 kb on + strandat 4256.094 kb on + strandat 4256.094 kb on + strandat 4256.094 kb on + strandat 4256.094 kb on + strandat 4256.095 kb on - strandat 4256.095 kb on - strandat 4256.530 kb on - strand, within Rru_A3706at 4256.530 kb on - strand, within Rru_A3706at 4256.530 kb on - strand, within Rru_A3706at 4256.542 kb on - strand, within Rru_A3706at 4256.542 kb on - strand, within Rru_A3706at 4256.542 kb on - strand, within Rru_A3706at 4256.776 kb on - strand, within Rru_A3706at 4256.785 kb on - strand, within Rru_A3706at 4256.785 kb on - strand, within Rru_A3706at 4256.863 kb on - strand, within Rru_A3706at 4256.863 kb on - strand, within Rru_A3706at 4256.863 kb on - strand, within Rru_A3706at 4256.863 kb on - strand, within Rru_A3706at 4256.863 kb on - strand, within Rru_A3706at 4256.863 kb on - strand, within Rru_A3706at 4257.252 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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4,256,092 + +0.7
4,256,092 + -2.4
4,256,092 + +1.9
4,256,093 - +0.5
4,256,093 - -1.7
4,256,094 + +0.6
4,256,094 + -1.8
4,256,094 + -0.6
4,256,094 + -2.6
4,256,094 + -1.1
4,256,095 - -0.1
4,256,095 - +0.6
4,256,530 - Rru_A3706 0.40 -1.9
4,256,530 - Rru_A3706 0.40 +0.8
4,256,530 - Rru_A3706 0.40 -0.3
4,256,542 - Rru_A3706 0.41 +0.3
4,256,542 - Rru_A3706 0.41 +0.2
4,256,542 - Rru_A3706 0.41 +1.2
4,256,776 - Rru_A3706 0.58 +0.6
4,256,785 - Rru_A3706 0.59 -0.0
4,256,785 - Rru_A3706 0.59 +0.2
4,256,863 - Rru_A3706 0.65 +1.1
4,256,863 - Rru_A3706 0.65 +0.6
4,256,863 - Rru_A3706 0.65 +0.5
4,256,863 - Rru_A3706 0.65 +0.4
4,256,863 - Rru_A3706 0.65 +0.9
4,256,863 - Rru_A3706 0.65 +0.1
4,257,252 - +1.7

Or see this region's nucleotide sequence