Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3658 and Rru_A3659 overlap by 4 nucleotides Rru_A3659 and Rru_A3660 overlap by 4 nucleotides
Rru_A3658: Rru_A3658 - Glycosyl transferase, group 1 (NCBI), at 4,199,096 to 4,200,256
_A3658
Rru_A3659: Rru_A3659 - hypothetical protein (NCBI), at 4,200,253 to 4,201,857
_A3659
Rru_A3660: Rru_A3660 - tRNA and rRNA cytosine-C5-methylase (NCBI), at 4,201,854 to 4,203,170
_A3660
Position (kb) 4200
4201
4202 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4199.863 kb on - strand, within Rru_A3658 at 4200.562 kb on - strand, within Rru_A3659 at 4200.635 kb on + strand, within Rru_A3659 at 4200.635 kb on + strand, within Rru_A3659 at 4200.891 kb on - strand, within Rru_A3659 at 4200.891 kb on - strand, within Rru_A3659 at 4200.891 kb on - strand, within Rru_A3659 at 4200.891 kb on - strand, within Rru_A3659 at 4200.891 kb on - strand, within Rru_A3659 at 4201.112 kb on + strand, within Rru_A3659 at 4201.278 kb on - strand, within Rru_A3659 at 4201.278 kb on - strand, within Rru_A3659 at 4201.278 kb on - strand, within Rru_A3659 at 4201.278 kb on - strand, within Rru_A3659 at 4201.278 kb on - strand, within Rru_A3659 at 4201.278 kb on - strand, within Rru_A3659 at 4201.284 kb on - strand, within Rru_A3659 at 4201.284 kb on - strand, within Rru_A3659 at 4201.284 kb on - strand, within Rru_A3659 at 4201.284 kb on - strand, within Rru_A3659 at 4201.329 kb on - strand, within Rru_A3659 at 4201.408 kb on - strand, within Rru_A3659 at 4201.644 kb on - strand, within Rru_A3659 at 4201.743 kb on - strand at 4201.743 kb on - strand at 4201.743 kb on - strand at 4201.743 kb on - strand at 4202.106 kb on + strand, within Rru_A3660 at 4202.106 kb on + strand, within Rru_A3660 at 4202.106 kb on + strand, within Rru_A3660 at 4202.268 kb on - strand, within Rru_A3660 at 4202.705 kb on - strand, within Rru_A3660 at 4202.828 kb on - strand, within Rru_A3660 at 4202.828 kb on - strand, within Rru_A3660
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 4,199,863 - Rru_A3658 0.66 +0.2 4,200,562 - Rru_A3659 0.19 -1.5 4,200,635 + Rru_A3659 0.24 -1.5 4,200,635 + Rru_A3659 0.24 -1.6 4,200,891 - Rru_A3659 0.40 -3.4 4,200,891 - Rru_A3659 0.40 -2.5 4,200,891 - Rru_A3659 0.40 -0.8 4,200,891 - Rru_A3659 0.40 +3.0 4,200,891 - Rru_A3659 0.40 +0.6 4,201,112 + Rru_A3659 0.54 -1.5 4,201,278 - Rru_A3659 0.64 +0.1 4,201,278 - Rru_A3659 0.64 -1.2 4,201,278 - Rru_A3659 0.64 -3.7 4,201,278 - Rru_A3659 0.64 +2.9 4,201,278 - Rru_A3659 0.64 -1.1 4,201,278 - Rru_A3659 0.64 -0.1 4,201,284 - Rru_A3659 0.64 -2.9 4,201,284 - Rru_A3659 0.64 -0.1 4,201,284 - Rru_A3659 0.64 -0.4 4,201,284 - Rru_A3659 0.64 -3.0 4,201,329 - Rru_A3659 0.67 -2.1 4,201,408 - Rru_A3659 0.72 +0.2 4,201,644 - Rru_A3659 0.87 -2.1 4,201,743 - -1.2 4,201,743 - -2.3 4,201,743 - -4.1 4,201,743 - -4.6 4,202,106 + Rru_A3660 0.19 -1.0 4,202,106 + Rru_A3660 0.19 -0.4 4,202,106 + Rru_A3660 0.19 -0.4 4,202,268 - Rru_A3660 0.31 +0.6 4,202,705 - Rru_A3660 0.65 -2.9 4,202,828 - Rru_A3660 0.74 -1.0 4,202,828 - Rru_A3660 0.74 -2.3
Or see this region's nucleotide sequence