Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3283

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3281 and Rru_A3282 are separated by 86 nucleotidesRru_A3282 and Rru_A3283 are separated by 124 nucleotidesRru_A3283 and Rru_A3284 are separated by 181 nucleotidesRru_A3284 and Rru_A3285 are separated by 119 nucleotides Rru_A3281: Rru_A3281 - Delta 1-pyrroline-5-carboxylate reductase (NCBI), at 3,778,417 to 3,779,241 _A3281 Rru_A3282: Rru_A3282 - hypothetical protein (NCBI), at 3,779,328 to 3,779,972 _A3282 Rru_A3283: Rru_A3283 - Phasin (NCBI), at 3,780,097 to 3,780,573 _A3283 Rru_A3284: Rru_A3284 - Secretion chaperone CsaA (NCBI), at 3,780,755 to 3,781,090 _A3284 Rru_A3285: Rru_A3285 - Response regulator receiver domain protein (CheY) (NCBI), at 3,781,210 to 3,782,007 _A3285 Position (kb) 3780 3781Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3779.287 kb on + strandat 3779.460 kb on + strand, within Rru_A3282at 3779.461 kb on - strand, within Rru_A3282at 3779.775 kb on + strand, within Rru_A3282at 3779.781 kb on + strand, within Rru_A3282at 3779.781 kb on + strand, within Rru_A3282at 3779.781 kb on + strand, within Rru_A3282at 3779.783 kb on + strand, within Rru_A3282at 3779.783 kb on + strand, within Rru_A3282at 3779.783 kb on + strand, within Rru_A3282at 3779.784 kb on - strand, within Rru_A3282at 3779.784 kb on - strand, within Rru_A3282at 3779.784 kb on - strand, within Rru_A3282at 3779.967 kb on - strandat 3779.967 kb on - strandat 3779.967 kb on - strandat 3779.970 kb on + strandat 3779.971 kb on - strandat 3779.982 kb on + strandat 3780.040 kb on + strandat 3780.055 kb on - strandat 3780.092 kb on - strandat 3780.092 kb on - strandat 3780.142 kb on + strandat 3780.231 kb on + strand, within Rru_A3283at 3780.571 kb on + strandat 3780.571 kb on + strandat 3780.571 kb on + strandat 3780.572 kb on - strandat 3780.611 kb on + strandat 3780.657 kb on + strandat 3780.657 kb on + strandat 3780.737 kb on + strandat 3780.768 kb on - strandat 3780.768 kb on - strandat 3780.917 kb on + strand, within Rru_A3284at 3780.917 kb on + strand, within Rru_A3284at 3780.917 kb on + strand, within Rru_A3284at 3780.918 kb on - strand, within Rru_A3284at 3780.918 kb on - strand, within Rru_A3284at 3780.918 kb on - strand, within Rru_A3284at 3781.005 kb on + strand, within Rru_A3284at 3781.005 kb on + strand, within Rru_A3284at 3781.005 kb on + strand, within Rru_A3284at 3781.006 kb on - strand, within Rru_A3284at 3781.089 kb on - strandat 3781.182 kb on + strandat 3781.276 kb on - strandat 3781.304 kb on + strand, within Rru_A3285at 3781.304 kb on + strand, within Rru_A3285at 3781.537 kb on - strand, within Rru_A3285

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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3,779,287 + -2.8
3,779,460 + Rru_A3282 0.20 -2.1
3,779,461 - Rru_A3282 0.21 +1.1
3,779,775 + Rru_A3282 0.69 -0.7
3,779,781 + Rru_A3282 0.70 -4.8
3,779,781 + Rru_A3282 0.70 -2.0
3,779,781 + Rru_A3282 0.70 -0.9
3,779,783 + Rru_A3282 0.71 -0.4
3,779,783 + Rru_A3282 0.71 -3.3
3,779,783 + Rru_A3282 0.71 -0.1
3,779,784 - Rru_A3282 0.71 -1.9
3,779,784 - Rru_A3282 0.71 -0.5
3,779,784 - Rru_A3282 0.71 +1.4
3,779,967 - +1.7
3,779,967 - -3.2
3,779,967 - -0.4
3,779,970 + -0.4
3,779,971 - +0.2
3,779,982 + -2.5
3,780,040 + -2.3
3,780,055 - -1.9
3,780,092 - -0.3
3,780,092 - +1.7
3,780,142 + -0.1
3,780,231 + Rru_A3283 0.28 +1.3
3,780,571 + +0.1
3,780,571 + +0.7
3,780,571 + +1.0
3,780,572 - +2.2
3,780,611 + +0.7
3,780,657 + -1.3
3,780,657 + -1.4
3,780,737 + -2.8
3,780,768 - +0.7
3,780,768 - -0.1
3,780,917 + Rru_A3284 0.48 +1.1
3,780,917 + Rru_A3284 0.48 -3.0
3,780,917 + Rru_A3284 0.48 -3.6
3,780,918 - Rru_A3284 0.49 +0.8
3,780,918 - Rru_A3284 0.49 +0.1
3,780,918 - Rru_A3284 0.49 -1.7
3,781,005 + Rru_A3284 0.74 -2.5
3,781,005 + Rru_A3284 0.74 -1.1
3,781,005 + Rru_A3284 0.74 -1.2
3,781,006 - Rru_A3284 0.75 +0.8
3,781,089 - -0.2
3,781,182 + -1.6
3,781,276 - +0.4
3,781,304 + Rru_A3285 0.12 -2.3
3,781,304 + Rru_A3285 0.12 -2.8
3,781,537 - Rru_A3285 0.41 -0.4

Or see this region's nucleotide sequence