Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2923 and Rru_A2924 are separated by 4 nucleotides Rru_A2924 and Rru_A2925 are separated by 173 nucleotides
Rru_A2923: Rru_A2923 - hypothetical protein (NCBI), at 3,365,295 to 3,366,488
_A2923
Rru_A2924: Rru_A2924 - Glycosyl transferase, family 2 (NCBI), at 3,366,493 to 3,367,281
_A2924
Rru_A2925: Rru_A2925 - Major facilitator superfamily MFS_1 (NCBI), at 3,367,455 to 3,368,732
_A2925
Position (kb)
3366
3367
3368 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3365.522 kb on + strand, within Rru_A2923 at 3365.522 kb on + strand, within Rru_A2923 at 3365.522 kb on + strand, within Rru_A2923 at 3365.522 kb on + strand, within Rru_A2923 at 3365.522 kb on + strand, within Rru_A2923 at 3365.523 kb on - strand, within Rru_A2923 at 3365.523 kb on - strand, within Rru_A2923 at 3365.523 kb on - strand, within Rru_A2923 at 3365.832 kb on + strand, within Rru_A2923 at 3365.833 kb on - strand, within Rru_A2923 at 3366.289 kb on + strand, within Rru_A2923 at 3366.289 kb on + strand, within Rru_A2923 at 3366.290 kb on - strand, within Rru_A2923 at 3366.486 kb on + strand at 3366.486 kb on + strand at 3366.486 kb on + strand at 3366.495 kb on - strand at 3366.660 kb on + strand, within Rru_A2924 at 3366.722 kb on + strand, within Rru_A2924 at 3366.722 kb on + strand, within Rru_A2924 at 3366.722 kb on + strand, within Rru_A2924 at 3366.723 kb on - strand, within Rru_A2924 at 3366.972 kb on - strand, within Rru_A2924 at 3366.972 kb on - strand, within Rru_A2924 at 3366.972 kb on - strand, within Rru_A2924 at 3366.972 kb on - strand, within Rru_A2924 at 3367.284 kb on + strand at 3367.285 kb on - strand at 3367.340 kb on + strand at 3367.340 kb on + strand at 3367.341 kb on - strand at 3367.380 kb on + strand at 3367.380 kb on + strand at 3367.498 kb on - strand at 3367.711 kb on + strand, within Rru_A2925
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 3,365,522 + Rru_A2923 0.19 -0.6 3,365,522 + Rru_A2923 0.19 -0.9 3,365,522 + Rru_A2923 0.19 -2.3 3,365,522 + Rru_A2923 0.19 -0.1 3,365,522 + Rru_A2923 0.19 +0.3 3,365,523 - Rru_A2923 0.19 -1.1 3,365,523 - Rru_A2923 0.19 -1.1 3,365,523 - Rru_A2923 0.19 -2.2 3,365,832 + Rru_A2923 0.45 -0.9 3,365,833 - Rru_A2923 0.45 -1.2 3,366,289 + Rru_A2923 0.83 +0.2 3,366,289 + Rru_A2923 0.83 -0.5 3,366,290 - Rru_A2923 0.83 +1.8 3,366,486 + +1.3 3,366,486 + -0.7 3,366,486 + -0.1 3,366,495 - -0.2 3,366,660 + Rru_A2924 0.21 -0.9 3,366,722 + Rru_A2924 0.29 +0.2 3,366,722 + Rru_A2924 0.29 +0.9 3,366,722 + Rru_A2924 0.29 -0.2 3,366,723 - Rru_A2924 0.29 -0.2 3,366,972 - Rru_A2924 0.61 +0.8 3,366,972 - Rru_A2924 0.61 -1.5 3,366,972 - Rru_A2924 0.61 +1.8 3,366,972 - Rru_A2924 0.61 -0.3 3,367,284 + -0.7 3,367,285 - -0.4 3,367,340 + -2.0 3,367,340 + -0.5 3,367,341 - +0.1 3,367,380 + -2.1 3,367,380 + -1.6 3,367,498 - +1.2 3,367,711 + Rru_A2925 0.20 -0.2
Or see this region's nucleotide sequence