Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2924

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2923 and Rru_A2924 are separated by 4 nucleotidesRru_A2924 and Rru_A2925 are separated by 173 nucleotides Rru_A2923: Rru_A2923 - hypothetical protein (NCBI), at 3,365,295 to 3,366,488 _A2923 Rru_A2924: Rru_A2924 - Glycosyl transferase, family 2 (NCBI), at 3,366,493 to 3,367,281 _A2924 Rru_A2925: Rru_A2925 - Major facilitator superfamily MFS_1 (NCBI), at 3,367,455 to 3,368,732 _A2925 Position (kb) 3366 3367 3368Strain fitness (log2 ratio) -2 -1 0 1 2at 3365.522 kb on + strand, within Rru_A2923at 3365.522 kb on + strand, within Rru_A2923at 3365.522 kb on + strand, within Rru_A2923at 3365.522 kb on + strand, within Rru_A2923at 3365.522 kb on + strand, within Rru_A2923at 3365.523 kb on - strand, within Rru_A2923at 3365.523 kb on - strand, within Rru_A2923at 3365.523 kb on - strand, within Rru_A2923at 3365.832 kb on + strand, within Rru_A2923at 3365.833 kb on - strand, within Rru_A2923at 3366.289 kb on + strand, within Rru_A2923at 3366.289 kb on + strand, within Rru_A2923at 3366.290 kb on - strand, within Rru_A2923at 3366.486 kb on + strandat 3366.486 kb on + strandat 3366.486 kb on + strandat 3366.495 kb on - strandat 3366.660 kb on + strand, within Rru_A2924at 3366.722 kb on + strand, within Rru_A2924at 3366.722 kb on + strand, within Rru_A2924at 3366.722 kb on + strand, within Rru_A2924at 3366.723 kb on - strand, within Rru_A2924at 3366.972 kb on - strand, within Rru_A2924at 3366.972 kb on - strand, within Rru_A2924at 3366.972 kb on - strand, within Rru_A2924at 3366.972 kb on - strand, within Rru_A2924at 3367.284 kb on + strandat 3367.285 kb on - strandat 3367.340 kb on + strandat 3367.340 kb on + strandat 3367.341 kb on - strandat 3367.380 kb on + strandat 3367.380 kb on + strandat 3367.498 kb on - strandat 3367.711 kb on + strand, within Rru_A2925

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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3,365,522 + Rru_A2923 0.19 -0.6
3,365,522 + Rru_A2923 0.19 -0.9
3,365,522 + Rru_A2923 0.19 -2.3
3,365,522 + Rru_A2923 0.19 -0.1
3,365,522 + Rru_A2923 0.19 +0.3
3,365,523 - Rru_A2923 0.19 -1.1
3,365,523 - Rru_A2923 0.19 -1.1
3,365,523 - Rru_A2923 0.19 -2.2
3,365,832 + Rru_A2923 0.45 -0.9
3,365,833 - Rru_A2923 0.45 -1.2
3,366,289 + Rru_A2923 0.83 +0.2
3,366,289 + Rru_A2923 0.83 -0.5
3,366,290 - Rru_A2923 0.83 +1.8
3,366,486 + +1.3
3,366,486 + -0.7
3,366,486 + -0.1
3,366,495 - -0.2
3,366,660 + Rru_A2924 0.21 -0.9
3,366,722 + Rru_A2924 0.29 +0.2
3,366,722 + Rru_A2924 0.29 +0.9
3,366,722 + Rru_A2924 0.29 -0.2
3,366,723 - Rru_A2924 0.29 -0.2
3,366,972 - Rru_A2924 0.61 +0.8
3,366,972 - Rru_A2924 0.61 -1.5
3,366,972 - Rru_A2924 0.61 +1.8
3,366,972 - Rru_A2924 0.61 -0.3
3,367,284 + -0.7
3,367,285 - -0.4
3,367,340 + -2.0
3,367,340 + -0.5
3,367,341 - +0.1
3,367,380 + -2.1
3,367,380 + -1.6
3,367,498 - +1.2
3,367,711 + Rru_A2925 0.20 -0.2

Or see this region's nucleotide sequence