Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2908 and Rru_A2909 are separated by 5 nucleotides Rru_A2909 and Rru_A2910 are separated by 52 nucleotides Rru_A2910 and Rru_A2911 are separated by 47 nucleotides Rru_A2911 and Rru_A2912 are separated by 82 nucleotides
Rru_A2908: Rru_A2908 - Protein of unknown function DUF140 (NCBI), at 3,351,889 to 3,352,716
_A2908
Rru_A2909: Rru_A2909 - ABC transporter component (NCBI), at 3,352,722 to 3,353,555
_A2909
Rru_A2910: Rru_A2910 - Mammalian cell entry related (NCBI), at 3,353,608 to 3,354,561
_A2910
Rru_A2911: Rru_A2911 - ABC-type uncharacterized transport system auxiliary component-like (NCBI), at 3,354,609 to 3,355,220
_A2911
Rru_A2912: Rru_A2912 - Propeptide, PepSY amd peptidase M4 (NCBI), at 3,355,303 to 3,356,112
_A2912
Position (kb)
3353
3354
3355 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3352.800 kb on + strand at 3352.800 kb on + strand at 3352.801 kb on - strand at 3352.801 kb on - strand at 3352.801 kb on - strand at 3352.801 kb on - strand at 3352.803 kb on + strand at 3353.523 kb on + strand at 3353.523 kb on + strand at 3353.523 kb on + strand at 3353.524 kb on - strand at 3353.719 kb on - strand, within Rru_A2910 at 3353.719 kb on - strand, within Rru_A2910 at 3353.722 kb on + strand, within Rru_A2910 at 3353.722 kb on + strand, within Rru_A2910 at 3353.722 kb on + strand, within Rru_A2910 at 3353.722 kb on + strand, within Rru_A2910 at 3353.722 kb on + strand, within Rru_A2910 at 3353.723 kb on - strand, within Rru_A2910 at 3353.734 kb on + strand, within Rru_A2910 at 3353.734 kb on + strand, within Rru_A2910 at 3353.734 kb on + strand, within Rru_A2910 at 3353.735 kb on - strand, within Rru_A2910 at 3353.735 kb on - strand, within Rru_A2910 at 3353.735 kb on - strand, within Rru_A2910 at 3353.735 kb on - strand, within Rru_A2910 at 3353.735 kb on - strand, within Rru_A2910 at 3353.758 kb on + strand, within Rru_A2910 at 3353.759 kb on - strand, within Rru_A2910 at 3353.776 kb on + strand, within Rru_A2910 at 3353.776 kb on + strand, within Rru_A2910 at 3353.777 kb on - strand, within Rru_A2910 at 3353.777 kb on - strand, within Rru_A2910 at 3353.777 kb on - strand, within Rru_A2910 at 3353.777 kb on - strand, within Rru_A2910 at 3353.777 kb on - strand, within Rru_A2910 at 3354.033 kb on - strand, within Rru_A2910 at 3354.098 kb on - strand, within Rru_A2910 at 3354.098 kb on - strand, within Rru_A2910 at 3354.288 kb on + strand, within Rru_A2910 at 3354.288 kb on + strand, within Rru_A2910 at 3354.288 kb on + strand, within Rru_A2910 at 3354.289 kb on - strand, within Rru_A2910 at 3354.414 kb on + strand, within Rru_A2910 at 3354.414 kb on + strand, within Rru_A2910 at 3354.415 kb on - strand, within Rru_A2910 at 3354.415 kb on - strand, within Rru_A2910 at 3354.415 kb on - strand, within Rru_A2910 at 3354.415 kb on - strand, within Rru_A2910 at 3354.450 kb on + strand, within Rru_A2910 at 3354.450 kb on + strand, within Rru_A2910 at 3354.451 kb on - strand, within Rru_A2910 at 3354.451 kb on - strand, within Rru_A2910 at 3354.451 kb on - strand, within Rru_A2910 at 3354.456 kb on + strand, within Rru_A2910 at 3354.456 kb on + strand, within Rru_A2910 at 3354.457 kb on - strand, within Rru_A2910 at 3354.625 kb on + strand at 3354.711 kb on + strand, within Rru_A2911 at 3354.711 kb on + strand, within Rru_A2911 at 3354.711 kb on + strand, within Rru_A2911 at 3354.712 kb on - strand, within Rru_A2911 at 3354.712 kb on - strand, within Rru_A2911 at 3354.828 kb on - strand, within Rru_A2911 at 3354.855 kb on + strand, within Rru_A2911 at 3354.855 kb on + strand, within Rru_A2911 at 3354.855 kb on + strand, within Rru_A2911 at 3354.855 kb on + strand, within Rru_A2911 at 3354.856 kb on - strand, within Rru_A2911 at 3354.856 kb on - strand, within Rru_A2911 at 3354.856 kb on - strand, within Rru_A2911 at 3354.856 kb on - strand, within Rru_A2911 at 3354.856 kb on - strand, within Rru_A2911 at 3354.861 kb on + strand, within Rru_A2911 at 3354.862 kb on - strand, within Rru_A2911 at 3354.862 kb on - strand, within Rru_A2911 at 3354.915 kb on + strand, within Rru_A2911 at 3355.107 kb on + strand, within Rru_A2911 at 3355.107 kb on + strand, within Rru_A2911 at 3355.107 kb on + strand, within Rru_A2911 at 3355.107 kb on + strand, within Rru_A2911 at 3355.108 kb on - strand, within Rru_A2911 at 3355.108 kb on - strand, within Rru_A2911 at 3355.108 kb on - strand, within Rru_A2911 at 3355.108 kb on - strand, within Rru_A2911 at 3355.185 kb on + strand at 3355.186 kb on - strand at 3355.186 kb on - strand at 3355.208 kb on + strand at 3355.208 kb on + strand at 3355.208 kb on + strand at 3355.209 kb on - strand at 3355.256 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 3,352,800 + -1.4 3,352,800 + -0.8 3,352,801 - -0.1 3,352,801 - +1.0 3,352,801 - -1.0 3,352,801 - -3.5 3,352,803 + -1.6 3,353,523 + +0.2 3,353,523 + -3.4 3,353,523 + +1.2 3,353,524 - +0.1 3,353,719 - Rru_A2910 0.12 +0.1 3,353,719 - Rru_A2910 0.12 +1.5 3,353,722 + Rru_A2910 0.12 -1.9 3,353,722 + Rru_A2910 0.12 -0.6 3,353,722 + Rru_A2910 0.12 +0.2 3,353,722 + Rru_A2910 0.12 +1.1 3,353,722 + Rru_A2910 0.12 -3.0 3,353,723 - Rru_A2910 0.12 -0.7 3,353,734 + Rru_A2910 0.13 -0.4 3,353,734 + Rru_A2910 0.13 -2.1 3,353,734 + Rru_A2910 0.13 +0.3 3,353,735 - Rru_A2910 0.13 +2.2 3,353,735 - Rru_A2910 0.13 -0.7 3,353,735 - Rru_A2910 0.13 -0.4 3,353,735 - Rru_A2910 0.13 +0.3 3,353,735 - Rru_A2910 0.13 -0.8 3,353,758 + Rru_A2910 0.16 -3.2 3,353,759 - Rru_A2910 0.16 +0.5 3,353,776 + Rru_A2910 0.18 -0.3 3,353,776 + Rru_A2910 0.18 +0.9 3,353,777 - Rru_A2910 0.18 -2.0 3,353,777 - Rru_A2910 0.18 -0.1 3,353,777 - Rru_A2910 0.18 -1.0 3,353,777 - Rru_A2910 0.18 -0.7 3,353,777 - Rru_A2910 0.18 +1.3 3,354,033 - Rru_A2910 0.45 -0.2 3,354,098 - Rru_A2910 0.51 -0.3 3,354,098 - Rru_A2910 0.51 -1.8 3,354,288 + Rru_A2910 0.71 +1.7 3,354,288 + Rru_A2910 0.71 +0.6 3,354,288 + Rru_A2910 0.71 -2.3 3,354,289 - Rru_A2910 0.71 -0.7 3,354,414 + Rru_A2910 0.84 -1.6 3,354,414 + Rru_A2910 0.84 -1.8 3,354,415 - Rru_A2910 0.85 -3.5 3,354,415 - Rru_A2910 0.85 -0.4 3,354,415 - Rru_A2910 0.85 +0.5 3,354,415 - Rru_A2910 0.85 -0.3 3,354,450 + Rru_A2910 0.88 -0.7 3,354,450 + Rru_A2910 0.88 -2.5 3,354,451 - Rru_A2910 0.88 -3.2 3,354,451 - Rru_A2910 0.88 -4.6 3,354,451 - Rru_A2910 0.88 -2.3 3,354,456 + Rru_A2910 0.89 -1.5 3,354,456 + Rru_A2910 0.89 -0.5 3,354,457 - Rru_A2910 0.89 -3.4 3,354,625 + -1.6 3,354,711 + Rru_A2911 0.17 -1.6 3,354,711 + Rru_A2911 0.17 -0.3 3,354,711 + Rru_A2911 0.17 -0.8 3,354,712 - Rru_A2911 0.17 -1.7 3,354,712 - Rru_A2911 0.17 -0.9 3,354,828 - Rru_A2911 0.36 -1.4 3,354,855 + Rru_A2911 0.40 -3.7 3,354,855 + Rru_A2911 0.40 -2.9 3,354,855 + Rru_A2911 0.40 -0.8 3,354,855 + Rru_A2911 0.40 +0.5 3,354,856 - Rru_A2911 0.40 +0.8 3,354,856 - Rru_A2911 0.40 +0.1 3,354,856 - Rru_A2911 0.40 -3.7 3,354,856 - Rru_A2911 0.40 -0.6 3,354,856 - Rru_A2911 0.40 +0.3 3,354,861 + Rru_A2911 0.41 -1.8 3,354,862 - Rru_A2911 0.41 -0.4 3,354,862 - Rru_A2911 0.41 -1.3 3,354,915 + Rru_A2911 0.50 -1.1 3,355,107 + Rru_A2911 0.81 +0.1 3,355,107 + Rru_A2911 0.81 -3.9 3,355,107 + Rru_A2911 0.81 +0.9 3,355,107 + Rru_A2911 0.81 +1.5 3,355,108 - Rru_A2911 0.82 +1.8 3,355,108 - Rru_A2911 0.82 +0.1 3,355,108 - Rru_A2911 0.82 -0.1 3,355,108 - Rru_A2911 0.82 +2.9 3,355,185 + -1.2 3,355,186 - -1.8 3,355,186 - -1.1 3,355,208 + -0.4 3,355,208 + -1.3 3,355,208 + -2.7 3,355,209 - +0.2 3,355,256 - -0.3
Or see this region's nucleotide sequence