Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2819

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2818 and Rru_A2819 are separated by 259 nucleotidesRru_A2819 and Rru_A2820 are separated by 109 nucleotides Rru_A2818: Rru_A2818 - Alanine--tRNA ligase (NCBI), at 3,249,244 to 3,251,895 _A2818 Rru_A2819: Rru_A2819 - RecA DNA recombination protein (NCBI), at 3,252,155 to 3,253,255 _A2819 Rru_A2820: Rru_A2820 - Multi-sensor Hybrid Histidine Kinase (NCBI), at 3,253,365 to 3,255,854 _A2820 Position (kb) 3252 3253 3254Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3251.921 kb on - strandat 3251.921 kb on - strandat 3252.043 kb on - strandat 3252.432 kb on + strand, within Rru_A2819at 3252.915 kb on + strand, within Rru_A2819at 3253.477 kb on + strandat 3253.477 kb on + strandat 3253.477 kb on + strandat 3253.478 kb on - strandat 3253.565 kb on + strandat 3253.646 kb on + strand, within Rru_A2820at 3253.646 kb on + strand, within Rru_A2820at 3253.646 kb on + strand, within Rru_A2820at 3253.647 kb on - strand, within Rru_A2820at 3253.647 kb on - strand, within Rru_A2820at 3253.647 kb on - strand, within Rru_A2820at 3253.647 kb on - strand, within Rru_A2820at 3253.647 kb on - strand, within Rru_A2820at 3253.647 kb on - strand, within Rru_A2820at 3253.649 kb on - strand, within Rru_A2820at 3253.649 kb on - strand, within Rru_A2820at 3253.858 kb on + strand, within Rru_A2820at 3253.858 kb on + strand, within Rru_A2820at 3253.858 kb on + strand, within Rru_A2820at 3253.858 kb on + strand, within Rru_A2820at 3253.858 kb on + strand, within Rru_A2820at 3253.858 kb on + strand, within Rru_A2820at 3253.858 kb on + strand, within Rru_A2820at 3253.859 kb on - strand, within Rru_A2820at 3253.859 kb on - strand, within Rru_A2820at 3253.859 kb on - strand, within Rru_A2820at 3253.933 kb on + strand, within Rru_A2820at 3254.068 kb on + strand, within Rru_A2820at 3254.068 kb on + strand, within Rru_A2820at 3254.068 kb on + strand, within Rru_A2820at 3254.068 kb on + strand, within Rru_A2820at 3254.068 kb on + strand, within Rru_A2820at 3254.069 kb on - strand, within Rru_A2820at 3254.069 kb on - strand, within Rru_A2820

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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3,251,921 - +2.5
3,251,921 - -0.5
3,252,043 - -1.6
3,252,432 + Rru_A2819 0.25 -2.3
3,252,915 + Rru_A2819 0.69 -0.6
3,253,477 + -1.6
3,253,477 + -0.1
3,253,477 + +0.2
3,253,478 - -3.1
3,253,565 + -0.5
3,253,646 + Rru_A2820 0.11 +1.8
3,253,646 + Rru_A2820 0.11 +0.4
3,253,646 + Rru_A2820 0.11 +0.3
3,253,647 - Rru_A2820 0.11 +0.9
3,253,647 - Rru_A2820 0.11 +0.3
3,253,647 - Rru_A2820 0.11 +0.9
3,253,647 - Rru_A2820 0.11 +0.0
3,253,647 - Rru_A2820 0.11 +0.5
3,253,647 - Rru_A2820 0.11 -1.7
3,253,649 - Rru_A2820 0.11 +0.8
3,253,649 - Rru_A2820 0.11 +1.1
3,253,858 + Rru_A2820 0.20 -1.1
3,253,858 + Rru_A2820 0.20 -0.1
3,253,858 + Rru_A2820 0.20 +0.9
3,253,858 + Rru_A2820 0.20 +0.4
3,253,858 + Rru_A2820 0.20 -2.5
3,253,858 + Rru_A2820 0.20 +0.9
3,253,858 + Rru_A2820 0.20 -0.2
3,253,859 - Rru_A2820 0.20 -0.2
3,253,859 - Rru_A2820 0.20 +0.6
3,253,859 - Rru_A2820 0.20 -0.2
3,253,933 + Rru_A2820 0.23 +0.4
3,254,068 + Rru_A2820 0.28 +2.3
3,254,068 + Rru_A2820 0.28 +0.2
3,254,068 + Rru_A2820 0.28 -0.4
3,254,068 + Rru_A2820 0.28 -0.4
3,254,068 + Rru_A2820 0.28 -0.3
3,254,069 - Rru_A2820 0.28 +0.0
3,254,069 - Rru_A2820 0.28 -0.7

Or see this region's nucleotide sequence