Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2587 and Rru_A2588 are separated by 42 nucleotides Rru_A2588 and Rru_A2589 are separated by 34 nucleotides
Rru_A2587: Rru_A2587 - hypothetical protein (NCBI), at 3,006,990 to 3,008,003
_A2587
Rru_A2588: Rru_A2588 - hypothetical protein (NCBI), at 3,008,046 to 3,008,549
_A2588
Rru_A2589: Rru_A2589 - hypothetical protein (NCBI), at 3,008,584 to 3,009,942
_A2589
Position (kb)
3008
3009 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3007.151 kb on + strand, within Rru_A2587 at 3007.234 kb on + strand, within Rru_A2587 at 3007.234 kb on + strand, within Rru_A2587 at 3007.261 kb on + strand, within Rru_A2587 at 3007.261 kb on + strand, within Rru_A2587 at 3007.261 kb on + strand, within Rru_A2587 at 3007.261 kb on + strand, within Rru_A2587 at 3007.262 kb on - strand, within Rru_A2587 at 3007.268 kb on + strand, within Rru_A2587 at 3007.268 kb on + strand, within Rru_A2587 at 3007.268 kb on + strand, within Rru_A2587 at 3007.268 kb on + strand, within Rru_A2587 at 3007.268 kb on + strand, within Rru_A2587 at 3007.268 kb on + strand, within Rru_A2587 at 3007.269 kb on - strand, within Rru_A2587 at 3007.269 kb on - strand, within Rru_A2587 at 3007.269 kb on - strand, within Rru_A2587 at 3007.269 kb on - strand, within Rru_A2587 at 3007.269 kb on - strand, within Rru_A2587 at 3007.269 kb on - strand, within Rru_A2587 at 3007.269 kb on - strand, within Rru_A2587 at 3007.270 kb on + strand, within Rru_A2587 at 3007.270 kb on + strand, within Rru_A2587 at 3007.271 kb on - strand, within Rru_A2587 at 3007.271 kb on - strand, within Rru_A2587 at 3007.271 kb on - strand, within Rru_A2587 at 3007.336 kb on + strand, within Rru_A2587 at 3007.336 kb on + strand, within Rru_A2587 at 3007.336 kb on + strand, within Rru_A2587 at 3007.336 kb on + strand, within Rru_A2587 at 3007.336 kb on + strand, within Rru_A2587 at 3007.336 kb on + strand, within Rru_A2587 at 3007.337 kb on - strand, within Rru_A2587 at 3007.562 kb on + strand, within Rru_A2587 at 3007.946 kb on - strand at 3007.946 kb on - strand at 3007.946 kb on - strand at 3008.657 kb on + strand at 3009.014 kb on + strand, within Rru_A2589 at 3009.014 kb on + strand, within Rru_A2589 at 3009.014 kb on + strand, within Rru_A2589 at 3009.015 kb on - strand, within Rru_A2589 at 3009.015 kb on - strand, within Rru_A2589 at 3009.015 kb on - strand, within Rru_A2589 at 3009.017 kb on + strand, within Rru_A2589 at 3009.018 kb on - strand, within Rru_A2589 at 3009.494 kb on + strand, within Rru_A2589
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 3,007,151 + Rru_A2587 0.16 -4.0 3,007,234 + Rru_A2587 0.24 -0.5 3,007,234 + Rru_A2587 0.24 -1.5 3,007,261 + Rru_A2587 0.27 +0.4 3,007,261 + Rru_A2587 0.27 +0.5 3,007,261 + Rru_A2587 0.27 -0.3 3,007,261 + Rru_A2587 0.27 +2.0 3,007,262 - Rru_A2587 0.27 +0.3 3,007,268 + Rru_A2587 0.27 +2.3 3,007,268 + Rru_A2587 0.27 -2.2 3,007,268 + Rru_A2587 0.27 +0.1 3,007,268 + Rru_A2587 0.27 -1.8 3,007,268 + Rru_A2587 0.27 +1.0 3,007,268 + Rru_A2587 0.27 -3.5 3,007,269 - Rru_A2587 0.28 -0.4 3,007,269 - Rru_A2587 0.28 +0.2 3,007,269 - Rru_A2587 0.28 +0.6 3,007,269 - Rru_A2587 0.28 -1.0 3,007,269 - Rru_A2587 0.28 +1.2 3,007,269 - Rru_A2587 0.28 -1.6 3,007,269 - Rru_A2587 0.28 -1.3 3,007,270 + Rru_A2587 0.28 +0.1 3,007,270 + Rru_A2587 0.28 -2.3 3,007,271 - Rru_A2587 0.28 +0.5 3,007,271 - Rru_A2587 0.28 -1.5 3,007,271 - Rru_A2587 0.28 -0.6 3,007,336 + Rru_A2587 0.34 -0.7 3,007,336 + Rru_A2587 0.34 -1.6 3,007,336 + Rru_A2587 0.34 +0.0 3,007,336 + Rru_A2587 0.34 +0.7 3,007,336 + Rru_A2587 0.34 -2.2 3,007,336 + Rru_A2587 0.34 +0.2 3,007,337 - Rru_A2587 0.34 +0.4 3,007,562 + Rru_A2587 0.56 +0.3 3,007,946 - +1.2 3,007,946 - -1.6 3,007,946 - -1.1 3,008,657 + +0.5 3,009,014 + Rru_A2589 0.32 -2.6 3,009,014 + Rru_A2589 0.32 -3.8 3,009,014 + Rru_A2589 0.32 -0.8 3,009,015 - Rru_A2589 0.32 +0.8 3,009,015 - Rru_A2589 0.32 +0.1 3,009,015 - Rru_A2589 0.32 +0.2 3,009,017 + Rru_A2589 0.32 +1.1 3,009,018 - Rru_A2589 0.32 -0.7 3,009,494 + Rru_A2589 0.67 +0.9
Or see this region's nucleotide sequence