Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1326

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1324 and Rru_A1325 are separated by 41 nucleotidesRru_A1325 and Rru_A1326 are separated by 33 nucleotidesRru_A1326 and Rru_A1327 are separated by 2 nucleotidesRru_A1327 and Rru_A1328 are separated by 45 nucleotides Rru_A1324: Rru_A1324 - beta subunit of malonate decarboxylase (NCBI), at 1,562,704 to 1,563,660 _A1324 Rru_A1325: Rru_A1325 - hypothetical protein (NCBI), at 1,563,702 to 1,564,595 _A1325 Rru_A1326: Rru_A1326 - hypothetical protein (NCBI), at 1,564,629 to 1,565,729 _A1326 Rru_A1327: Rru_A1327 - hypothetical protein (NCBI), at 1,565,732 to 1,566,484 _A1327 Rru_A1328: Rru_A1328 - Biotin/lipoyl attachment (NCBI), at 1,566,530 to 1,566,739 _A1328 Position (kb) 1564 1565 1566Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1563.677 kb on + strandat 1563.678 kb on - strandat 1563.782 kb on + strandat 1563.783 kb on - strandat 1563.918 kb on + strand, within Rru_A1325at 1563.918 kb on + strand, within Rru_A1325at 1563.918 kb on + strand, within Rru_A1325at 1563.919 kb on - strand, within Rru_A1325at 1563.948 kb on + strand, within Rru_A1325at 1563.948 kb on + strand, within Rru_A1325at 1563.948 kb on + strand, within Rru_A1325at 1563.949 kb on - strand, within Rru_A1325at 1563.949 kb on - strand, within Rru_A1325at 1563.969 kb on + strand, within Rru_A1325at 1563.970 kb on - strand, within Rru_A1325at 1563.970 kb on - strand, within Rru_A1325at 1563.970 kb on - strand, within Rru_A1325at 1564.101 kb on + strand, within Rru_A1325at 1564.102 kb on - strand, within Rru_A1325at 1564.578 kb on + strandat 1564.579 kb on - strandat 1564.601 kb on + strandat 1564.602 kb on - strandat 1564.788 kb on + strand, within Rru_A1326at 1564.788 kb on + strand, within Rru_A1326at 1564.788 kb on + strand, within Rru_A1326at 1564.788 kb on + strand, within Rru_A1326at 1564.788 kb on + strand, within Rru_A1326at 1564.930 kb on - strand, within Rru_A1326at 1564.930 kb on - strand, within Rru_A1326at 1564.943 kb on + strand, within Rru_A1326at 1564.944 kb on - strand, within Rru_A1326at 1565.205 kb on - strand, within Rru_A1326at 1565.220 kb on + strand, within Rru_A1326at 1565.221 kb on - strand, within Rru_A1326at 1565.221 kb on - strand, within Rru_A1326at 1565.276 kb on + strand, within Rru_A1326at 1565.276 kb on + strand, within Rru_A1326at 1565.276 kb on + strand, within Rru_A1326at 1565.277 kb on - strand, within Rru_A1326at 1565.310 kb on + strand, within Rru_A1326at 1565.311 kb on - strand, within Rru_A1326at 1565.406 kb on + strand, within Rru_A1326at 1565.424 kb on + strand, within Rru_A1326at 1565.425 kb on - strand, within Rru_A1326at 1565.425 kb on - strand, within Rru_A1326at 1565.433 kb on + strand, within Rru_A1326at 1565.433 kb on + strand, within Rru_A1326at 1565.434 kb on - strand, within Rru_A1326at 1565.434 kb on - strand, within Rru_A1326at 1565.728 kb on - strandat 1565.728 kb on - strandat 1565.728 kb on - strandat 1565.749 kb on + strandat 1565.761 kb on + strandat 1566.164 kb on + strand, within Rru_A1327at 1566.165 kb on - strand, within Rru_A1327at 1566.529 kb on + strandat 1566.530 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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1,563,677 + -1.3
1,563,678 - -0.2
1,563,782 + -0.6
1,563,783 - -0.5
1,563,918 + Rru_A1325 0.24 +2.6
1,563,918 + Rru_A1325 0.24 -0.2
1,563,918 + Rru_A1325 0.24 -0.7
1,563,919 - Rru_A1325 0.24 -2.6
1,563,948 + Rru_A1325 0.28 -3.1
1,563,948 + Rru_A1325 0.28 -1.2
1,563,948 + Rru_A1325 0.28 -0.7
1,563,949 - Rru_A1325 0.28 +0.9
1,563,949 - Rru_A1325 0.28 +1.8
1,563,969 + Rru_A1325 0.30 -3.0
1,563,970 - Rru_A1325 0.30 +1.6
1,563,970 - Rru_A1325 0.30 -4.6
1,563,970 - Rru_A1325 0.30 +0.5
1,564,101 + Rru_A1325 0.45 +0.8
1,564,102 - Rru_A1325 0.45 +0.1
1,564,578 + -2.3
1,564,579 - -3.4
1,564,601 + +0.0
1,564,602 - -1.6
1,564,788 + Rru_A1326 0.14 +0.0
1,564,788 + Rru_A1326 0.14 -0.0
1,564,788 + Rru_A1326 0.14 -2.0
1,564,788 + Rru_A1326 0.14 -0.3
1,564,788 + Rru_A1326 0.14 -0.6
1,564,930 - Rru_A1326 0.27 -1.0
1,564,930 - Rru_A1326 0.27 +0.0
1,564,943 + Rru_A1326 0.29 +1.4
1,564,944 - Rru_A1326 0.29 -2.1
1,565,205 - Rru_A1326 0.52 -1.4
1,565,220 + Rru_A1326 0.54 -1.0
1,565,221 - Rru_A1326 0.54 +0.1
1,565,221 - Rru_A1326 0.54 +1.3
1,565,276 + Rru_A1326 0.59 -1.4
1,565,276 + Rru_A1326 0.59 -5.1
1,565,276 + Rru_A1326 0.59 -3.2
1,565,277 - Rru_A1326 0.59 -0.5
1,565,310 + Rru_A1326 0.62 +0.6
1,565,311 - Rru_A1326 0.62 -3.5
1,565,406 + Rru_A1326 0.71 -0.4
1,565,424 + Rru_A1326 0.72 -1.0
1,565,425 - Rru_A1326 0.72 -0.5
1,565,425 - Rru_A1326 0.72 -1.5
1,565,433 + Rru_A1326 0.73 -4.5
1,565,433 + Rru_A1326 0.73 -3.3
1,565,434 - Rru_A1326 0.73 +1.0
1,565,434 - Rru_A1326 0.73 +0.3
1,565,728 - +0.8
1,565,728 - -0.6
1,565,728 - -2.2
1,565,749 + +0.5
1,565,761 + -3.3
1,566,164 + Rru_A1327 0.57 -1.3
1,566,165 - Rru_A1327 0.58 +1.3
1,566,529 + -3.8
1,566,530 - +0.3

Or see this region's nucleotide sequence