Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0859

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0858 and Rru_A0859 are separated by 26 nucleotidesRru_A0859 and Rru_A0860 are separated by 72 nucleotides Rru_A0858: Rru_A0858 - Drug resistance transporter EmrB/QacA subfamily (NCBI), at 1,022,400 to 1,023,947 _A0858 Rru_A0859: Rru_A0859 - Secretion protein HlyD (NCBI), at 1,023,974 to 1,025,182 _A0859 Rru_A0860: Rru_A0860 - RND efflux system, outer membrane lipoprotein, NodT (NCBI), at 1,025,255 to 1,026,727 _A0860 Position (kb) 1023 1024 1025 1026Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1023.038 kb on + strand, within Rru_A0858at 1023.100 kb on + strand, within Rru_A0858at 1023.427 kb on + strand, within Rru_A0858at 1023.428 kb on - strand, within Rru_A0858at 1023.428 kb on - strand, within Rru_A0858at 1023.428 kb on - strand, within Rru_A0858at 1023.550 kb on + strand, within Rru_A0858at 1023.551 kb on - strand, within Rru_A0858at 1023.551 kb on - strand, within Rru_A0858at 1023.551 kb on - strand, within Rru_A0858at 1023.551 kb on - strand, within Rru_A0858at 1024.353 kb on + strand, within Rru_A0859at 1024.353 kb on + strand, within Rru_A0859at 1024.353 kb on + strand, within Rru_A0859at 1024.353 kb on + strand, within Rru_A0859at 1024.354 kb on - strand, within Rru_A0859at 1024.354 kb on - strand, within Rru_A0859at 1024.354 kb on - strand, within Rru_A0859at 1024.354 kb on - strand, within Rru_A0859at 1024.354 kb on - strand, within Rru_A0859at 1024.354 kb on - strand, within Rru_A0859at 1024.354 kb on - strand, within Rru_A0859at 1024.354 kb on - strand, within Rru_A0859at 1024.560 kb on + strand, within Rru_A0859at 1024.560 kb on + strand, within Rru_A0859at 1024.560 kb on + strand, within Rru_A0859at 1024.560 kb on + strand, within Rru_A0859at 1024.560 kb on + strand, within Rru_A0859at 1024.561 kb on - strand, within Rru_A0859at 1024.561 kb on - strand, within Rru_A0859at 1024.561 kb on - strand, within Rru_A0859at 1025.008 kb on + strand, within Rru_A0859at 1025.009 kb on - strand, within Rru_A0859at 1025.022 kb on + strand, within Rru_A0859at 1025.022 kb on + strand, within Rru_A0859at 1025.022 kb on + strand, within Rru_A0859at 1025.022 kb on + strand, within Rru_A0859at 1025.023 kb on - strand, within Rru_A0859at 1025.076 kb on + strandat 1025.242 kb on - strandat 1025.365 kb on - strandat 1025.435 kb on + strand, within Rru_A0860at 1025.436 kb on - strand, within Rru_A0860at 1025.439 kb on + strand, within Rru_A0860at 1025.439 kb on + strand, within Rru_A0860at 1025.439 kb on + strand, within Rru_A0860at 1025.440 kb on - strand, within Rru_A0860at 1025.440 kb on - strand, within Rru_A0860at 1025.481 kb on + strand, within Rru_A0860at 1025.482 kb on - strand, within Rru_A0860at 1025.482 kb on - strand, within Rru_A0860at 1025.482 kb on - strand, within Rru_A0860at 1025.598 kb on + strand, within Rru_A0860at 1025.599 kb on - strand, within Rru_A0860at 1026.180 kb on + strand, within Rru_A0860at 1026.181 kb on - strand, within Rru_A0860at 1026.181 kb on - strand, within Rru_A0860

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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1,023,038 + Rru_A0858 0.41 -1.2
1,023,100 + Rru_A0858 0.45 -1.3
1,023,427 + Rru_A0858 0.66 -0.1
1,023,428 - Rru_A0858 0.66 +0.0
1,023,428 - Rru_A0858 0.66 +0.0
1,023,428 - Rru_A0858 0.66 +1.1
1,023,550 + Rru_A0858 0.74 -0.6
1,023,551 - Rru_A0858 0.74 +1.4
1,023,551 - Rru_A0858 0.74 -2.7
1,023,551 - Rru_A0858 0.74 -0.8
1,023,551 - Rru_A0858 0.74 +0.4
1,024,353 + Rru_A0859 0.31 -3.3
1,024,353 + Rru_A0859 0.31 +0.4
1,024,353 + Rru_A0859 0.31 -2.1
1,024,353 + Rru_A0859 0.31 -0.3
1,024,354 - Rru_A0859 0.31 -0.4
1,024,354 - Rru_A0859 0.31 -1.9
1,024,354 - Rru_A0859 0.31 +0.4
1,024,354 - Rru_A0859 0.31 +0.6
1,024,354 - Rru_A0859 0.31 -4.1
1,024,354 - Rru_A0859 0.31 -3.0
1,024,354 - Rru_A0859 0.31 -2.1
1,024,354 - Rru_A0859 0.31 -4.5
1,024,560 + Rru_A0859 0.48 -2.5
1,024,560 + Rru_A0859 0.48 +1.0
1,024,560 + Rru_A0859 0.48 -1.2
1,024,560 + Rru_A0859 0.48 +0.2
1,024,560 + Rru_A0859 0.48 -0.5
1,024,561 - Rru_A0859 0.49 +0.8
1,024,561 - Rru_A0859 0.49 +0.7
1,024,561 - Rru_A0859 0.49 -1.0
1,025,008 + Rru_A0859 0.86 -0.6
1,025,009 - Rru_A0859 0.86 -0.4
1,025,022 + Rru_A0859 0.87 -5.4
1,025,022 + Rru_A0859 0.87 -0.1
1,025,022 + Rru_A0859 0.87 +0.6
1,025,022 + Rru_A0859 0.87 -2.9
1,025,023 - Rru_A0859 0.87 -0.6
1,025,076 + -0.2
1,025,242 - -0.5
1,025,365 - +0.4
1,025,435 + Rru_A0860 0.12 +0.8
1,025,436 - Rru_A0860 0.12 -3.1
1,025,439 + Rru_A0860 0.12 -2.7
1,025,439 + Rru_A0860 0.12 -2.9
1,025,439 + Rru_A0860 0.12 -0.5
1,025,440 - Rru_A0860 0.13 +0.0
1,025,440 - Rru_A0860 0.13 -3.5
1,025,481 + Rru_A0860 0.15 -1.9
1,025,482 - Rru_A0860 0.15 -0.5
1,025,482 - Rru_A0860 0.15 -0.0
1,025,482 - Rru_A0860 0.15 +0.4
1,025,598 + Rru_A0860 0.23 -2.4
1,025,599 - Rru_A0860 0.23 -2.2
1,026,180 + Rru_A0860 0.63 -0.4
1,026,181 - Rru_A0860 0.63 +1.2
1,026,181 - Rru_A0860 0.63 -0.6

Or see this region's nucleotide sequence