Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0796

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0794 and Rru_A0795 are separated by 12 nucleotidesRru_A0795 and Rru_A0796 are separated by 39 nucleotidesRru_A0796 and Rru_A0797 are separated by 391 nucleotides Rru_A0794: Rru_A0794 - Nitrogenase (NCBI), at 947,854 to 949,389 _A0794 Rru_A0795: Rru_A0795 - Nitrogenase iron protein (NCBI), at 949,402 to 950,277 _A0795 Rru_A0796: Rru_A0796 - Radical SAM (NCBI), at 950,317 to 951,312 _A0796 Rru_A0797: Rru_A0797 - major facilitator transporter superfamily MFS_1 (NCBI), at 951,704 to 952,939 _A0797 Position (kb) 950 951 952Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 949.525 kb on - strand, within Rru_A0795at 949.525 kb on - strand, within Rru_A0795at 949.525 kb on - strand, within Rru_A0795at 949.556 kb on + strand, within Rru_A0795at 949.557 kb on - strand, within Rru_A0795at 949.557 kb on - strand, within Rru_A0795at 949.646 kb on + strand, within Rru_A0795at 949.646 kb on + strand, within Rru_A0795at 949.646 kb on + strand, within Rru_A0795at 949.646 kb on + strand, within Rru_A0795at 949.646 kb on + strand, within Rru_A0795at 949.646 kb on + strand, within Rru_A0795at 949.763 kb on + strand, within Rru_A0795at 949.763 kb on + strand, within Rru_A0795at 949.763 kb on + strand, within Rru_A0795at 949.764 kb on - strand, within Rru_A0795at 949.799 kb on + strand, within Rru_A0795at 949.800 kb on - strand, within Rru_A0795at 949.913 kb on + strand, within Rru_A0795at 949.913 kb on + strand, within Rru_A0795at 949.914 kb on - strand, within Rru_A0795at 949.914 kb on - strand, within Rru_A0795at 949.914 kb on - strand, within Rru_A0795at 950.027 kb on + strand, within Rru_A0795at 950.027 kb on + strand, within Rru_A0795at 950.027 kb on + strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.111 kb on + strand, within Rru_A0795at 950.111 kb on + strand, within Rru_A0795at 950.111 kb on + strand, within Rru_A0795at 950.111 kb on + strand, within Rru_A0795at 950.111 kb on + strand, within Rru_A0795at 950.111 kb on + strand, within Rru_A0795at 950.112 kb on - strand, within Rru_A0795at 950.112 kb on - strand, within Rru_A0795at 950.178 kb on - strand, within Rru_A0795at 950.178 kb on - strand, within Rru_A0795at 950.205 kb on + strandat 950.206 kb on - strandat 950.246 kb on + strandat 950.246 kb on + strandat 950.357 kb on + strandat 950.428 kb on - strand, within Rru_A0796at 950.509 kb on - strand, within Rru_A0796at 951.464 kb on + strandat 951.786 kb on + strandat 951.787 kb on - strandat 951.787 kb on - strandat 951.910 kb on - strand, within Rru_A0797at 951.910 kb on - strand, within Rru_A0797at 951.948 kb on + strand, within Rru_A0797at 951.949 kb on - strand, within Rru_A0797at 951.949 kb on - strand, within Rru_A0797at 951.949 kb on - strand, within Rru_A0797at 951.949 kb on - strand, within Rru_A0797at 951.993 kb on + strand, within Rru_A0797at 951.993 kb on + strand, within Rru_A0797at 951.994 kb on - strand, within Rru_A0797at 951.994 kb on - strand, within Rru_A0797at 951.994 kb on - strand, within Rru_A0797at 951.994 kb on - strand, within Rru_A0797at 951.994 kb on - strand, within Rru_A0797at 951.994 kb on - strand, within Rru_A0797at 951.994 kb on - strand, within Rru_A0797at 951.994 kb on - strand, within Rru_A0797at 952.248 kb on + strand, within Rru_A0797at 952.248 kb on + strand, within Rru_A0797at 952.248 kb on + strand, within Rru_A0797at 952.248 kb on + strand, within Rru_A0797at 952.249 kb on - strand, within Rru_A0797at 952.249 kb on - strand, within Rru_A0797at 952.249 kb on - strand, within Rru_A0797at 952.254 kb on + strand, within Rru_A0797at 952.255 kb on - strand, within Rru_A0797at 952.261 kb on + strand, within Rru_A0797at 952.261 kb on + strand, within Rru_A0797at 952.261 kb on + strand, within Rru_A0797at 952.262 kb on - strand, within Rru_A0797at 952.262 kb on - strand, within Rru_A0797at 952.262 kb on - strand, within Rru_A0797

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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949,525 - Rru_A0795 0.14 +1.4
949,525 - Rru_A0795 0.14 -0.2
949,525 - Rru_A0795 0.14 -0.5
949,556 + Rru_A0795 0.18 -2.3
949,557 - Rru_A0795 0.18 +0.6
949,557 - Rru_A0795 0.18 +1.5
949,646 + Rru_A0795 0.28 -2.6
949,646 + Rru_A0795 0.28 -5.1
949,646 + Rru_A0795 0.28 +0.6
949,646 + Rru_A0795 0.28 -4.0
949,646 + Rru_A0795 0.28 +1.1
949,646 + Rru_A0795 0.28 -0.6
949,763 + Rru_A0795 0.41 +1.1
949,763 + Rru_A0795 0.41 -2.9
949,763 + Rru_A0795 0.41 +0.7
949,764 - Rru_A0795 0.41 -0.9
949,799 + Rru_A0795 0.45 +0.9
949,800 - Rru_A0795 0.45 +1.1
949,913 + Rru_A0795 0.58 +1.0
949,913 + Rru_A0795 0.58 -0.7
949,914 - Rru_A0795 0.58 +0.4
949,914 - Rru_A0795 0.58 -1.7
949,914 - Rru_A0795 0.58 -0.4
950,027 + Rru_A0795 0.71 +2.3
950,027 + Rru_A0795 0.71 +1.7
950,027 + Rru_A0795 0.71 -1.5
950,028 - Rru_A0795 0.71 +0.2
950,028 - Rru_A0795 0.71 -1.5
950,028 - Rru_A0795 0.71 -1.5
950,028 - Rru_A0795 0.71 +0.2
950,028 - Rru_A0795 0.71 +0.1
950,028 - Rru_A0795 0.71 +0.5
950,028 - Rru_A0795 0.71 +1.3
950,028 - Rru_A0795 0.71 -4.0
950,028 - Rru_A0795 0.71 +2.0
950,028 - Rru_A0795 0.71 +1.0
950,111 + Rru_A0795 0.81 +1.6
950,111 + Rru_A0795 0.81 +0.9
950,111 + Rru_A0795 0.81 -1.1
950,111 + Rru_A0795 0.81 -0.0
950,111 + Rru_A0795 0.81 +1.2
950,111 + Rru_A0795 0.81 -1.0
950,112 - Rru_A0795 0.81 -4.1
950,112 - Rru_A0795 0.81 -0.4
950,178 - Rru_A0795 0.89 -1.0
950,178 - Rru_A0795 0.89 -3.6
950,205 + +0.1
950,206 - +0.1
950,246 + -0.1
950,246 + -1.1
950,357 + -1.2
950,428 - Rru_A0796 0.11 +0.2
950,509 - Rru_A0796 0.19 -5.0
951,464 + -0.4
951,786 + +0.8
951,787 - +0.4
951,787 - -1.3
951,910 - Rru_A0797 0.17 +0.2
951,910 - Rru_A0797 0.17 +0.0
951,948 + Rru_A0797 0.20 +0.0
951,949 - Rru_A0797 0.20 +0.2
951,949 - Rru_A0797 0.20 -3.6
951,949 - Rru_A0797 0.20 +0.5
951,949 - Rru_A0797 0.20 +2.5
951,993 + Rru_A0797 0.23 +2.0
951,993 + Rru_A0797 0.23 -0.9
951,994 - Rru_A0797 0.23 +0.4
951,994 - Rru_A0797 0.23 -0.8
951,994 - Rru_A0797 0.23 +1.2
951,994 - Rru_A0797 0.23 -0.8
951,994 - Rru_A0797 0.23 -0.9
951,994 - Rru_A0797 0.23 -3.1
951,994 - Rru_A0797 0.23 -1.3
951,994 - Rru_A0797 0.23 +1.4
952,248 + Rru_A0797 0.44 -0.1
952,248 + Rru_A0797 0.44 -0.2
952,248 + Rru_A0797 0.44 -3.7
952,248 + Rru_A0797 0.44 -2.4
952,249 - Rru_A0797 0.44 -3.6
952,249 - Rru_A0797 0.44 +1.4
952,249 - Rru_A0797 0.44 +0.8
952,254 + Rru_A0797 0.44 -0.9
952,255 - Rru_A0797 0.45 +0.1
952,261 + Rru_A0797 0.45 -0.9
952,261 + Rru_A0797 0.45 -1.2
952,261 + Rru_A0797 0.45 -0.8
952,262 - Rru_A0797 0.45 +0.0
952,262 - Rru_A0797 0.45 -0.6
952,262 - Rru_A0797 0.45 -0.1

Or see this region's nucleotide sequence