Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0712

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0711 and Rru_A0712 are separated by 190 nucleotidesRru_A0712 and Rru_A0713 are separated by 115 nucleotides Rru_A0711: Rru_A0711 - phosphoribosylaminoimidazole-succinocarboxamidesynthase (RefSeq), at 838,755 to 839,522 _A0711 Rru_A0712: Rru_A0712 - Transcriptional Regulator, XRE family (NCBI), at 839,713 to 840,306 _A0712 Rru_A0713: Rru_A0713 - Protein of unknown function DUF833 (NCBI), at 840,422 to 841,198 _A0713 Position (kb) 839 840 841Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 838.736 kb on + strandat 838.736 kb on + strandat 838.737 kb on - strandat 839.652 kb on - strandat 839.682 kb on + strandat 839.682 kb on + strandat 839.683 kb on - strandat 839.683 kb on - strandat 839.683 kb on - strandat 839.683 kb on - strandat 840.206 kb on + strand, within Rru_A0712at 840.209 kb on + strand, within Rru_A0712at 840.209 kb on + strand, within Rru_A0712at 840.367 kb on + strandat 840.367 kb on + strandat 840.368 kb on - strandat 840.370 kb on + strandat 840.370 kb on + strandat 840.370 kb on + strandat 840.370 kb on + strandat 840.370 kb on + strandat 840.370 kb on + strandat 840.370 kb on + strandat 840.370 kb on + strandat 840.371 kb on - strandat 840.371 kb on - strandat 840.371 kb on - strandat 840.371 kb on - strandat 840.371 kb on - strandat 840.374 kb on + strandat 840.456 kb on + strandat 840.457 kb on - strandat 840.489 kb on - strandat 840.492 kb on + strandat 840.492 kb on + strandat 840.492 kb on + strandat 840.493 kb on - strandat 840.867 kb on + strand, within Rru_A0713at 840.923 kb on - strand, within Rru_A0713at 841.192 kb on + strandat 841.192 kb on + strandat 841.193 kb on - strandat 841.193 kb on - strandat 841.193 kb on - strandat 841.283 kb on - strandat 841.287 kb on + strandat 841.287 kb on + strandat 841.287 kb on + strandat 841.288 kb on - strandat 841.293 kb on + strandat 841.305 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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838,736 + +1.1
838,736 + -0.9
838,737 - -3.1
839,652 - +0.9
839,682 + +0.9
839,682 + +0.8
839,683 - -1.5
839,683 - +0.3
839,683 - -0.7
839,683 - +0.0
840,206 + Rru_A0712 0.83 -4.4
840,209 + Rru_A0712 0.84 +0.2
840,209 + Rru_A0712 0.84 -0.3
840,367 + -2.9
840,367 + -1.8
840,368 - -0.5
840,370 + +0.8
840,370 + -2.1
840,370 + -3.0
840,370 + -3.3
840,370 + -2.6
840,370 + +0.0
840,370 + -0.0
840,370 + +0.7
840,371 - +1.4
840,371 - -0.6
840,371 - +0.0
840,371 - +0.1
840,371 - -0.9
840,374 + -0.3
840,456 + -2.9
840,457 - +0.9
840,489 - -3.4
840,492 + +0.5
840,492 + -0.3
840,492 + +0.5
840,493 - -1.0
840,867 + Rru_A0713 0.57 -0.6
840,923 - Rru_A0713 0.64 -2.3
841,192 + -0.3
841,192 + +0.6
841,193 - -0.2
841,193 - -2.4
841,193 - +1.1
841,283 - +0.6
841,287 + -3.0
841,287 + -2.5
841,287 + +1.2
841,288 - +0.6
841,293 + +1.3
841,305 - +0.0

Or see this region's nucleotide sequence