Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0589

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0588 and Rru_A0589 overlap by 4 nucleotidesRru_A0589 and Rru_A0590 overlap by 1 nucleotidesRru_A0590 and Rru_A0591 overlap by 4 nucleotides Rru_A0588: Rru_A0588 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like (NCBI), at 698,645 to 699,661 _A0588 Rru_A0589: Rru_A0589 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like (NCBI), at 699,658 to 700,650 _A0589 Rru_A0590: Rru_A0590 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 700,650 to 701,558 _A0590 Rru_A0591: Rru_A0591 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 701,555 to 702,481 _A0591 Position (kb) 699 700 701Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 698.889 kb on + strand, within Rru_A0588at 698.890 kb on - strand, within Rru_A0588at 698.890 kb on - strand, within Rru_A0588at 698.910 kb on + strand, within Rru_A0588at 698.911 kb on - strand, within Rru_A0588at 698.911 kb on - strand, within Rru_A0588at 698.911 kb on - strand, within Rru_A0588at 698.911 kb on - strand, within Rru_A0588at 698.911 kb on - strand, within Rru_A0588at 698.952 kb on + strand, within Rru_A0588at 698.952 kb on + strand, within Rru_A0588at 698.952 kb on + strand, within Rru_A0588at 698.952 kb on + strand, within Rru_A0588at 698.952 kb on + strand, within Rru_A0588at 698.953 kb on - strand, within Rru_A0588at 698.977 kb on + strand, within Rru_A0588at 698.993 kb on + strand, within Rru_A0588at 698.993 kb on + strand, within Rru_A0588at 698.993 kb on + strand, within Rru_A0588at 698.994 kb on - strand, within Rru_A0588at 699.689 kb on + strandat 699.689 kb on + strandat 699.689 kb on + strandat 699.690 kb on - strandat 699.690 kb on - strandat 699.893 kb on + strand, within Rru_A0589at 699.893 kb on + strand, within Rru_A0589at 699.894 kb on - strand, within Rru_A0589at 699.894 kb on - strand, within Rru_A0589at 699.894 kb on - strand, within Rru_A0589at 699.912 kb on - strand, within Rru_A0589at 699.912 kb on - strand, within Rru_A0589at 699.912 kb on - strand, within Rru_A0589at 699.912 kb on - strand, within Rru_A0589at 699.956 kb on + strand, within Rru_A0589at 699.956 kb on + strand, within Rru_A0589at 699.956 kb on + strand, within Rru_A0589at 699.957 kb on - strand, within Rru_A0589at 699.957 kb on - strand, within Rru_A0589at 699.957 kb on - strand, within Rru_A0589at 699.957 kb on - strand, within Rru_A0589at 699.958 kb on + strand, within Rru_A0589at 699.958 kb on + strand, within Rru_A0589at 699.958 kb on + strand, within Rru_A0589at 699.958 kb on + strand, within Rru_A0589at 699.958 kb on + strand, within Rru_A0589at 699.959 kb on - strand, within Rru_A0589at 699.959 kb on - strand, within Rru_A0589at 700.191 kb on - strand, within Rru_A0589at 700.411 kb on + strand, within Rru_A0589at 700.411 kb on + strand, within Rru_A0589at 700.412 kb on - strand, within Rru_A0589at 700.885 kb on + strand, within Rru_A0590at 700.885 kb on + strand, within Rru_A0590at 700.886 kb on - strand, within Rru_A0590at 700.886 kb on - strand, within Rru_A0590at 701.125 kb on + strand, within Rru_A0590at 701.125 kb on + strand, within Rru_A0590at 701.125 kb on + strand, within Rru_A0590at 701.125 kb on + strand, within Rru_A0590at 701.125 kb on + strand, within Rru_A0590at 701.126 kb on - strand, within Rru_A0590at 701.126 kb on - strand, within Rru_A0590at 701.126 kb on - strand, within Rru_A0590at 701.126 kb on - strand, within Rru_A0590at 701.194 kb on + strand, within Rru_A0590at 701.194 kb on + strand, within Rru_A0590at 701.263 kb on + strand, within Rru_A0590at 701.264 kb on - strand, within Rru_A0590at 701.264 kb on - strand, within Rru_A0590at 701.356 kb on + strand, within Rru_A0590at 701.356 kb on + strand, within Rru_A0590at 701.357 kb on - strand, within Rru_A0590at 701.357 kb on - strand, within Rru_A0590at 701.458 kb on + strand, within Rru_A0590at 701.458 kb on + strand, within Rru_A0590at 701.459 kb on - strand, within Rru_A0590at 701.459 kb on - strand, within Rru_A0590at 701.592 kb on + strandat 701.592 kb on + strandat 701.592 kb on + strandat 701.592 kb on + strandat 701.592 kb on + strandat 701.592 kb on + strandat 701.592 kb on + strandat 701.592 kb on + strandat 701.593 kb on - strandat 701.593 kb on - strandat 701.593 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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698,889 + Rru_A0588 0.24 +0.4
698,890 - Rru_A0588 0.24 -3.4
698,890 - Rru_A0588 0.24 +0.9
698,910 + Rru_A0588 0.26 -1.4
698,911 - Rru_A0588 0.26 -1.2
698,911 - Rru_A0588 0.26 -0.0
698,911 - Rru_A0588 0.26 +1.4
698,911 - Rru_A0588 0.26 +1.6
698,911 - Rru_A0588 0.26 +0.6
698,952 + Rru_A0588 0.30 -0.0
698,952 + Rru_A0588 0.30 -0.3
698,952 + Rru_A0588 0.30 +1.4
698,952 + Rru_A0588 0.30 -0.1
698,952 + Rru_A0588 0.30 +1.1
698,953 - Rru_A0588 0.30 -0.0
698,977 + Rru_A0588 0.33 -4.1
698,993 + Rru_A0588 0.34 +0.4
698,993 + Rru_A0588 0.34 -1.8
698,993 + Rru_A0588 0.34 -0.2
698,994 - Rru_A0588 0.34 +0.4
699,689 + -1.9
699,689 + +0.1
699,689 + -2.1
699,690 - -0.0
699,690 - +2.5
699,893 + Rru_A0589 0.24 -0.5
699,893 + Rru_A0589 0.24 -1.3
699,894 - Rru_A0589 0.24 -1.2
699,894 - Rru_A0589 0.24 -0.4
699,894 - Rru_A0589 0.24 +1.1
699,912 - Rru_A0589 0.26 -1.2
699,912 - Rru_A0589 0.26 +1.4
699,912 - Rru_A0589 0.26 -0.5
699,912 - Rru_A0589 0.26 -0.2
699,956 + Rru_A0589 0.30 +0.9
699,956 + Rru_A0589 0.30 +1.4
699,956 + Rru_A0589 0.30 +0.4
699,957 - Rru_A0589 0.30 +0.4
699,957 - Rru_A0589 0.30 +0.7
699,957 - Rru_A0589 0.30 -1.3
699,957 - Rru_A0589 0.30 -2.6
699,958 + Rru_A0589 0.30 +0.4
699,958 + Rru_A0589 0.30 -0.3
699,958 + Rru_A0589 0.30 -1.7
699,958 + Rru_A0589 0.30 +1.0
699,958 + Rru_A0589 0.30 +0.7
699,959 - Rru_A0589 0.30 -1.0
699,959 - Rru_A0589 0.30 -1.3
700,191 - Rru_A0589 0.54 -4.4
700,411 + Rru_A0589 0.76 +0.4
700,411 + Rru_A0589 0.76 -0.5
700,412 - Rru_A0589 0.76 -3.2
700,885 + Rru_A0590 0.26 +0.1
700,885 + Rru_A0590 0.26 -3.4
700,886 - Rru_A0590 0.26 -3.1
700,886 - Rru_A0590 0.26 +0.1
701,125 + Rru_A0590 0.52 -0.2
701,125 + Rru_A0590 0.52 -0.7
701,125 + Rru_A0590 0.52 -0.4
701,125 + Rru_A0590 0.52 -0.3
701,125 + Rru_A0590 0.52 +2.0
701,126 - Rru_A0590 0.52 +0.7
701,126 - Rru_A0590 0.52 -0.5
701,126 - Rru_A0590 0.52 +0.4
701,126 - Rru_A0590 0.52 +0.5
701,194 + Rru_A0590 0.60 +0.1
701,194 + Rru_A0590 0.60 +0.9
701,263 + Rru_A0590 0.67 +0.7
701,264 - Rru_A0590 0.68 -0.7
701,264 - Rru_A0590 0.68 -2.8
701,356 + Rru_A0590 0.78 +0.3
701,356 + Rru_A0590 0.78 -0.1
701,357 - Rru_A0590 0.78 -0.5
701,357 - Rru_A0590 0.78 -3.7
701,458 + Rru_A0590 0.89 -0.5
701,458 + Rru_A0590 0.89 +0.4
701,459 - Rru_A0590 0.89 +0.2
701,459 - Rru_A0590 0.89 -1.6
701,592 + +0.8
701,592 + +0.4
701,592 + +0.5
701,592 + -2.3
701,592 + +1.5
701,592 + +0.7
701,592 + -1.2
701,592 + -3.5
701,593 - -1.8
701,593 - +1.0
701,593 - +1.1

Or see this region's nucleotide sequence