Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0560 and Rru_A0561 overlap by 11 nucleotides Rru_A0561 and Rru_A0562 are separated by 61 nucleotides Rru_A0562 and Rru_A0563 overlap by 4 nucleotides
Rru_A0560: Rru_A0560 - Cytochrome bd ubiquinol oxidase, subunit I (NCBI), at 662,187 to 663,617
_A0560
Rru_A0561: Rru_A0561 - Cytochrome bd ubiquinol oxidase, subunit II (NCBI), at 663,607 to 664,608
_A0561
Rru_A0562: Rru_A0562 - Peptidase S1 and S6, chymotrypsin/Hap (NCBI), at 664,670 to 665,590
_A0562
Rru_A0563: Rru_A0563 - Twin-arginine translocation pathway signal (NCBI), at 665,587 to 666,852
_A0563
Position (kb) 663
664
665 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 662.654 kb on + strand, within Rru_A0560 at 662.654 kb on + strand, within Rru_A0560 at 662.655 kb on - strand, within Rru_A0560 at 662.669 kb on + strand, within Rru_A0560 at 662.750 kb on + strand, within Rru_A0560 at 662.750 kb on + strand, within Rru_A0560 at 662.766 kb on + strand, within Rru_A0560 at 662.767 kb on - strand, within Rru_A0560 at 663.090 kb on + strand, within Rru_A0560 at 663.277 kb on - strand, within Rru_A0560 at 663.294 kb on + strand, within Rru_A0560 at 663.387 kb on + strand, within Rru_A0560 at 663.401 kb on + strand, within Rru_A0560 at 663.401 kb on + strand, within Rru_A0560 at 663.401 kb on + strand, within Rru_A0560 at 663.402 kb on - strand, within Rru_A0560 at 663.402 kb on - strand, within Rru_A0560 at 663.410 kb on + strand, within Rru_A0560 at 663.472 kb on - strand, within Rru_A0560 at 663.664 kb on + strand at 663.664 kb on + strand at 663.664 kb on + strand at 663.664 kb on + strand at 663.665 kb on - strand at 663.665 kb on - strand at 663.665 kb on - strand at 663.665 kb on - strand at 663.735 kb on + strand, within Rru_A0561 at 663.736 kb on - strand, within Rru_A0561 at 663.832 kb on + strand, within Rru_A0561 at 663.832 kb on + strand, within Rru_A0561 at 663.832 kb on + strand, within Rru_A0561 at 663.856 kb on + strand, within Rru_A0561 at 663.856 kb on + strand, within Rru_A0561 at 663.856 kb on + strand, within Rru_A0561 at 663.857 kb on - strand, within Rru_A0561 at 663.857 kb on - strand, within Rru_A0561 at 663.857 kb on - strand, within Rru_A0561 at 663.857 kb on - strand, within Rru_A0561 at 664.114 kb on + strand, within Rru_A0561 at 664.116 kb on + strand, within Rru_A0561 at 664.116 kb on + strand, within Rru_A0561 at 664.116 kb on + strand, within Rru_A0561 at 664.117 kb on - strand, within Rru_A0561 at 664.117 kb on - strand, within Rru_A0561 at 664.411 kb on + strand, within Rru_A0561 at 664.411 kb on + strand, within Rru_A0561 at 664.412 kb on - strand, within Rru_A0561 at 664.412 kb on - strand, within Rru_A0561 at 664.435 kb on + strand, within Rru_A0561 at 664.441 kb on + strand, within Rru_A0561 at 664.441 kb on + strand, within Rru_A0561 at 664.441 kb on + strand, within Rru_A0561 at 664.441 kb on + strand, within Rru_A0561 at 664.441 kb on + strand, within Rru_A0561 at 664.441 kb on + strand, within Rru_A0561 at 664.441 kb on + strand, within Rru_A0561 at 664.441 kb on + strand, within Rru_A0561 at 664.442 kb on - strand, within Rru_A0561 at 664.442 kb on - strand, within Rru_A0561 at 664.442 kb on - strand, within Rru_A0561 at 664.442 kb on - strand, within Rru_A0561 at 664.443 kb on + strand, within Rru_A0561 at 664.443 kb on + strand, within Rru_A0561 at 664.443 kb on + strand, within Rru_A0561 at 664.443 kb on + strand, within Rru_A0561 at 664.443 kb on + strand, within Rru_A0561 at 664.443 kb on + strand, within Rru_A0561 at 664.444 kb on - strand, within Rru_A0561 at 664.546 kb on + strand at 664.555 kb on + strand at 664.561 kb on + strand at 664.561 kb on + strand at 664.561 kb on + strand at 664.671 kb on + strand at 664.672 kb on - strand at 664.827 kb on + strand, within Rru_A0562 at 665.067 kb on + strand, within Rru_A0562
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 662,654 + Rru_A0560 0.33 -2.7 662,654 + Rru_A0560 0.33 -0.6 662,655 - Rru_A0560 0.33 -0.6 662,669 + Rru_A0560 0.34 -1.8 662,750 + Rru_A0560 0.39 -2.8 662,750 + Rru_A0560 0.39 -1.9 662,766 + Rru_A0560 0.40 +0.7 662,767 - Rru_A0560 0.41 -2.0 663,090 + Rru_A0560 0.63 -0.7 663,277 - Rru_A0560 0.76 -2.2 663,294 + Rru_A0560 0.77 -1.6 663,387 + Rru_A0560 0.84 -3.0 663,401 + Rru_A0560 0.85 -0.5 663,401 + Rru_A0560 0.85 -1.4 663,401 + Rru_A0560 0.85 +0.8 663,402 - Rru_A0560 0.85 -3.9 663,402 - Rru_A0560 0.85 -3.0 663,410 + Rru_A0560 0.85 +1.0 663,472 - Rru_A0560 0.90 -0.7 663,664 + -1.6 663,664 + -1.1 663,664 + +1.3 663,664 + +1.5 663,665 - -1.5 663,665 - -2.8 663,665 - -2.6 663,665 - +0.3 663,735 + Rru_A0561 0.13 -4.2 663,736 - Rru_A0561 0.13 -0.5 663,832 + Rru_A0561 0.22 -4.1 663,832 + Rru_A0561 0.22 +0.0 663,832 + Rru_A0561 0.22 -2.0 663,856 + Rru_A0561 0.25 -1.9 663,856 + Rru_A0561 0.25 -3.1 663,856 + Rru_A0561 0.25 -0.7 663,857 - Rru_A0561 0.25 -2.2 663,857 - Rru_A0561 0.25 -3.7 663,857 - Rru_A0561 0.25 +4.2 663,857 - Rru_A0561 0.25 -2.9 664,114 + Rru_A0561 0.51 -1.0 664,116 + Rru_A0561 0.51 -3.1 664,116 + Rru_A0561 0.51 -1.6 664,116 + Rru_A0561 0.51 -2.9 664,117 - Rru_A0561 0.51 -0.4 664,117 - Rru_A0561 0.51 +0.2 664,411 + Rru_A0561 0.80 -4.1 664,411 + Rru_A0561 0.80 -3.3 664,412 - Rru_A0561 0.80 -3.9 664,412 - Rru_A0561 0.80 -2.3 664,435 + Rru_A0561 0.83 +1.1 664,441 + Rru_A0561 0.83 -0.8 664,441 + Rru_A0561 0.83 -0.2 664,441 + Rru_A0561 0.83 +2.2 664,441 + Rru_A0561 0.83 -1.4 664,441 + Rru_A0561 0.83 -0.1 664,441 + Rru_A0561 0.83 +0.0 664,441 + Rru_A0561 0.83 -2.8 664,441 + Rru_A0561 0.83 -4.2 664,442 - Rru_A0561 0.83 -2.0 664,442 - Rru_A0561 0.83 +0.6 664,442 - Rru_A0561 0.83 -2.2 664,442 - Rru_A0561 0.83 -2.2 664,443 + Rru_A0561 0.83 -1.4 664,443 + Rru_A0561 0.83 -2.1 664,443 + Rru_A0561 0.83 -1.7 664,443 + Rru_A0561 0.83 -2.0 664,443 + Rru_A0561 0.83 -1.6 664,443 + Rru_A0561 0.83 -0.9 664,444 - Rru_A0561 0.84 -0.4 664,546 + -0.4 664,555 + -1.3 664,561 + -1.2 664,561 + -1.6 664,561 + -1.0 664,671 + +1.0 664,672 - -4.2 664,827 + Rru_A0562 0.17 +0.8 665,067 + Rru_A0562 0.43 +0.7
Or see this region's nucleotide sequence