Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0494 and Rru_A0495 are separated by 6 nucleotides Rru_A0495 and Rru_A0496 are separated by 127 nucleotides Rru_A0496 and Rru_A0497 are separated by 45 nucleotides Rru_A0497 and Rru_A0498 are separated by 61 nucleotides Rru_A0498 and Rru_A0499 overlap by 4 nucleotides
Rru_A0494: Rru_A0494 - Squalene/phytoene synthase (NCBI), at 580,336 to 581,364
_A0494
Rru_A0495: Rru_A0495 - hypothetical protein (NCBI), at 581,371 to 581,706
_A0495
Rru_A0496: Rru_A0496 - Cyclic nucleotide-binding domain (cNMP-BD) protein (NCBI), at 581,834 to 582,223
_A0496
Rru_A0497: Rru_A0497 - ABC transporter component (NCBI), at 582,269 to 583,369
_A0497
Rru_A0498: Rru_A0498 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 583,431 to 584,213
_A0498
Rru_A0499: Rru_A0499 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 584,210 to 585,082
_A0499
Position (kb) 582
583
584 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 581.412 kb on + strand, within Rru_A0495 at 581.466 kb on - strand, within Rru_A0495 at 581.527 kb on - strand, within Rru_A0495 at 581.587 kb on + strand, within Rru_A0495 at 581.588 kb on - strand, within Rru_A0495 at 581.588 kb on - strand, within Rru_A0495 at 581.590 kb on - strand, within Rru_A0495 at 581.704 kb on + strand at 581.704 kb on + strand at 581.757 kb on + strand at 581.762 kb on + strand at 581.762 kb on + strand at 581.763 kb on - strand at 581.934 kb on - strand, within Rru_A0496 at 581.934 kb on - strand, within Rru_A0496 at 581.934 kb on - strand, within Rru_A0496 at 582.222 kb on - strand at 582.222 kb on - strand at 582.270 kb on + strand at 582.270 kb on + strand at 582.270 kb on + strand at 582.270 kb on + strand at 582.270 kb on + strand at 582.271 kb on - strand at 582.271 kb on - strand at 582.271 kb on - strand at 582.271 kb on - strand at 582.291 kb on - strand at 582.372 kb on + strand at 582.372 kb on + strand at 582.372 kb on + strand at 582.373 kb on - strand at 582.373 kb on - strand at 582.373 kb on - strand at 582.373 kb on - strand at 582.666 kb on + strand, within Rru_A0497 at 582.666 kb on + strand, within Rru_A0497 at 582.667 kb on - strand, within Rru_A0497 at 582.667 kb on - strand, within Rru_A0497 at 582.667 kb on - strand, within Rru_A0497 at 582.667 kb on - strand, within Rru_A0497 at 582.936 kb on + strand, within Rru_A0497 at 582.936 kb on + strand, within Rru_A0497 at 582.943 kb on - strand, within Rru_A0497 at 583.080 kb on + strand, within Rru_A0497 at 583.149 kb on - strand, within Rru_A0497 at 583.323 kb on + strand at 583.323 kb on + strand at 583.324 kb on - strand at 583.324 kb on - strand at 583.324 kb on - strand at 583.324 kb on - strand at 583.351 kb on + strand at 583.410 kb on - strand at 583.556 kb on + strand, within Rru_A0498 at 583.568 kb on - strand, within Rru_A0498 at 583.568 kb on - strand, within Rru_A0498 at 583.568 kb on - strand, within Rru_A0498 at 583.668 kb on - strand, within Rru_A0498 at 583.780 kb on + strand, within Rru_A0498 at 583.780 kb on + strand, within Rru_A0498 at 583.781 kb on - strand, within Rru_A0498 at 583.781 kb on - strand, within Rru_A0498 at 583.784 kb on + strand, within Rru_A0498 at 583.784 kb on + strand, within Rru_A0498 at 583.784 kb on + strand, within Rru_A0498 at 583.784 kb on + strand, within Rru_A0498 at 583.784 kb on + strand, within Rru_A0498 at 583.784 kb on + strand, within Rru_A0498 at 583.784 kb on + strand, within Rru_A0498 at 583.785 kb on - strand, within Rru_A0498 at 583.785 kb on - strand, within Rru_A0498 at 583.785 kb on - strand, within Rru_A0498 at 583.785 kb on - strand, within Rru_A0498 at 583.785 kb on - strand, within Rru_A0498 at 583.785 kb on - strand, within Rru_A0498 at 583.785 kb on - strand, within Rru_A0498 at 583.785 kb on - strand, within Rru_A0498 at 583.785 kb on - strand, within Rru_A0498 at 583.785 kb on - strand, within Rru_A0498 at 583.785 kb on - strand, within Rru_A0498 at 583.785 kb on - strand, within Rru_A0498 at 583.786 kb on + strand, within Rru_A0498 at 583.786 kb on + strand, within Rru_A0498 at 583.786 kb on + strand, within Rru_A0498 at 583.786 kb on + strand, within Rru_A0498 at 583.786 kb on + strand, within Rru_A0498 at 583.787 kb on - strand, within Rru_A0498 at 583.787 kb on - strand, within Rru_A0498 at 583.787 kb on - strand, within Rru_A0498 at 583.807 kb on + strand, within Rru_A0498 at 583.807 kb on + strand, within Rru_A0498 at 583.888 kb on + strand, within Rru_A0498 at 583.984 kb on + strand, within Rru_A0498 at 583.985 kb on - strand, within Rru_A0498 at 584.085 kb on - strand, within Rru_A0498 at 584.107 kb on + strand, within Rru_A0498 at 584.107 kb on + strand, within Rru_A0498 at 584.107 kb on + strand, within Rru_A0498 at 584.167 kb on + strand at 584.167 kb on + strand at 584.168 kb on - strand at 584.254 kb on + strand at 584.254 kb on + strand at 584.255 kb on - strand at 584.255 kb on - strand at 584.256 kb on + strand at 584.256 kb on + strand at 584.256 kb on + strand at 584.256 kb on + strand at 584.257 kb on - strand at 584.257 kb on - strand at 584.257 kb on - strand at 584.257 kb on - strand at 584.257 kb on - strand at 584.257 kb on - strand at 584.257 kb on - strand at 584.308 kb on - strand, within Rru_A0499 at 584.352 kb on + strand, within Rru_A0499 at 584.352 kb on + strand, within Rru_A0499 at 584.352 kb on + strand, within Rru_A0499 at 584.353 kb on - strand, within Rru_A0499 at 584.353 kb on - strand, within Rru_A0499
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 581,412 + Rru_A0495 0.12 -2.5 581,466 - Rru_A0495 0.28 +0.2 581,527 - Rru_A0495 0.46 -1.5 581,587 + Rru_A0495 0.64 -3.5 581,588 - Rru_A0495 0.65 -0.6 581,588 - Rru_A0495 0.65 -1.4 581,590 - Rru_A0495 0.65 -1.3 581,704 + +0.4 581,704 + -0.2 581,757 + +1.6 581,762 + -0.0 581,762 + -3.0 581,763 - -3.4 581,934 - Rru_A0496 0.26 -1.6 581,934 - Rru_A0496 0.26 -1.2 581,934 - Rru_A0496 0.26 -1.6 582,222 - -2.4 582,222 - +0.1 582,270 + -0.1 582,270 + -4.5 582,270 + -0.4 582,270 + +0.5 582,270 + +0.6 582,271 - -0.7 582,271 - -1.2 582,271 - +0.6 582,271 - -2.4 582,291 - +0.6 582,372 + -0.3 582,372 + -2.9 582,372 + -0.1 582,373 - -1.3 582,373 - -0.6 582,373 - -0.2 582,373 - +1.0 582,666 + Rru_A0497 0.36 +0.5 582,666 + Rru_A0497 0.36 +0.1 582,667 - Rru_A0497 0.36 -2.3 582,667 - Rru_A0497 0.36 +0.1 582,667 - Rru_A0497 0.36 +1.5 582,667 - Rru_A0497 0.36 -2.3 582,936 + Rru_A0497 0.61 +0.6 582,936 + Rru_A0497 0.61 -1.1 582,943 - Rru_A0497 0.61 -2.0 583,080 + Rru_A0497 0.74 +0.9 583,149 - Rru_A0497 0.80 -0.6 583,323 + -3.3 583,323 + +0.2 583,324 - -1.8 583,324 - +0.9 583,324 - +0.4 583,324 - +0.0 583,351 + +0.3 583,410 - -2.6 583,556 + Rru_A0498 0.16 -2.9 583,568 - Rru_A0498 0.17 -0.7 583,568 - Rru_A0498 0.17 +0.4 583,568 - Rru_A0498 0.17 -1.8 583,668 - Rru_A0498 0.30 -1.1 583,780 + Rru_A0498 0.45 -0.4 583,780 + Rru_A0498 0.45 -2.4 583,781 - Rru_A0498 0.45 +0.9 583,781 - Rru_A0498 0.45 -0.7 583,784 + Rru_A0498 0.45 -2.3 583,784 + Rru_A0498 0.45 -1.8 583,784 + Rru_A0498 0.45 -0.7 583,784 + Rru_A0498 0.45 +0.2 583,784 + Rru_A0498 0.45 -0.3 583,784 + Rru_A0498 0.45 +0.6 583,784 + Rru_A0498 0.45 -2.5 583,785 - Rru_A0498 0.45 -0.7 583,785 - Rru_A0498 0.45 -2.3 583,785 - Rru_A0498 0.45 +0.9 583,785 - Rru_A0498 0.45 +1.1 583,785 - Rru_A0498 0.45 +0.4 583,785 - Rru_A0498 0.45 +0.7 583,785 - Rru_A0498 0.45 -3.7 583,785 - Rru_A0498 0.45 +0.7 583,785 - Rru_A0498 0.45 -0.2 583,785 - Rru_A0498 0.45 +0.6 583,785 - Rru_A0498 0.45 +0.9 583,785 - Rru_A0498 0.45 +1.4 583,786 + Rru_A0498 0.45 -0.1 583,786 + Rru_A0498 0.45 -1.1 583,786 + Rru_A0498 0.45 +0.6 583,786 + Rru_A0498 0.45 +1.1 583,786 + Rru_A0498 0.45 -0.4 583,787 - Rru_A0498 0.45 +0.1 583,787 - Rru_A0498 0.45 -0.8 583,787 - Rru_A0498 0.45 -0.9 583,807 + Rru_A0498 0.48 -3.2 583,807 + Rru_A0498 0.48 -0.2 583,888 + Rru_A0498 0.58 +1.4 583,984 + Rru_A0498 0.71 -0.2 583,985 - Rru_A0498 0.71 -0.2 584,085 - Rru_A0498 0.84 -1.7 584,107 + Rru_A0498 0.86 -1.8 584,107 + Rru_A0498 0.86 -4.0 584,107 + Rru_A0498 0.86 -1.2 584,167 + +2.7 584,167 + +1.1 584,168 - -0.7 584,254 + -2.2 584,254 + +0.7 584,255 - -1.8 584,255 - -0.6 584,256 + -2.0 584,256 + -0.5 584,256 + +1.1 584,256 + +0.3 584,257 - +0.6 584,257 - -0.7 584,257 - -0.1 584,257 - +2.4 584,257 - +0.9 584,257 - +1.9 584,257 - +1.1 584,308 - Rru_A0499 0.11 +1.9 584,352 + Rru_A0499 0.16 +0.8 584,352 + Rru_A0499 0.16 -1.3 584,352 + Rru_A0499 0.16 +0.9 584,353 - Rru_A0499 0.16 -3.1 584,353 - Rru_A0499 0.16 +0.2
Or see this region's nucleotide sequence