Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0381

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0379 and Rru_A0380 are separated by 76 nucleotidesRru_A0380 and Rru_A0381 are separated by 42 nucleotidesRru_A0381 and Rru_A0382 are separated by 69 nucleotidesRru_A0382 and Rru_A0383 are separated by 135 nucleotides Rru_A0379: Rru_A0379 - Flavodoxin, long chain (NCBI), at 457,849 to 458,331 _A0379 Rru_A0380: Rru_A0380 - Glyoxalase/bleomycin resistance protein/dioxygenase (NCBI), at 458,408 to 458,764 _A0380 Rru_A0381: Rru_A0381 - Major facilitator superfamily transporter MFS_1 (NCBI), at 458,807 to 460,051 _A0381 Rru_A0382: Rru_A0382 - Transcriptional Regulator, MerR family (NCBI), at 460,121 to 460,585 _A0382 Rru_A0383: Rru_A0383 - SH3 domain protein (NCBI), at 460,721 to 461,086 _A0383 Position (kb) 458 459 460 461Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 457.831 kb on + strandat 457.831 kb on + strandat 457.831 kb on + strandat 457.832 kb on - strandat 457.832 kb on - strandat 457.832 kb on - strandat 457.857 kb on + strandat 457.868 kb on - strandat 457.868 kb on - strandat 457.868 kb on - strandat 458.005 kb on + strand, within Rru_A0379at 458.005 kb on + strand, within Rru_A0379at 458.005 kb on + strand, within Rru_A0379at 458.153 kb on - strand, within Rru_A0379at 458.153 kb on - strand, within Rru_A0379at 458.209 kb on + strand, within Rru_A0379at 458.215 kb on + strand, within Rru_A0379at 458.215 kb on + strand, within Rru_A0379at 458.215 kb on + strand, within Rru_A0379at 458.215 kb on + strand, within Rru_A0379at 458.216 kb on - strand, within Rru_A0379at 458.216 kb on - strand, within Rru_A0379at 458.216 kb on - strand, within Rru_A0379at 458.216 kb on - strand, within Rru_A0379at 458.216 kb on - strand, within Rru_A0379at 458.216 kb on - strand, within Rru_A0379at 458.217 kb on + strand, within Rru_A0379at 458.217 kb on + strand, within Rru_A0379at 458.217 kb on + strand, within Rru_A0379at 458.217 kb on + strand, within Rru_A0379at 458.217 kb on + strand, within Rru_A0379at 458.217 kb on + strand, within Rru_A0379at 458.217 kb on + strand, within Rru_A0379at 458.218 kb on - strand, within Rru_A0379at 458.218 kb on - strand, within Rru_A0379at 458.218 kb on - strand, within Rru_A0379at 458.218 kb on - strand, within Rru_A0379at 458.218 kb on - strand, within Rru_A0379at 458.218 kb on - strand, within Rru_A0379at 458.218 kb on - strand, within Rru_A0379at 458.221 kb on + strand, within Rru_A0379at 458.222 kb on - strand, within Rru_A0379at 458.222 kb on - strand, within Rru_A0379at 458.222 kb on - strand, within Rru_A0379at 458.222 kb on - strand, within Rru_A0379at 458.222 kb on - strand, within Rru_A0379at 458.222 kb on - strand, within Rru_A0379at 458.444 kb on - strand, within Rru_A0380at 458.444 kb on - strand, within Rru_A0380at 458.444 kb on - strand, within Rru_A0380at 458.446 kb on + strand, within Rru_A0380at 458.446 kb on + strand, within Rru_A0380at 458.446 kb on + strand, within Rru_A0380at 458.446 kb on + strand, within Rru_A0380at 458.489 kb on + strand, within Rru_A0380at 458.489 kb on + strand, within Rru_A0380at 458.489 kb on + strand, within Rru_A0380at 458.490 kb on - strand, within Rru_A0380at 458.490 kb on - strand, within Rru_A0380at 458.490 kb on - strand, within Rru_A0380at 458.611 kb on - strand, within Rru_A0380at 458.618 kb on + strand, within Rru_A0380at 458.618 kb on + strand, within Rru_A0380at 458.618 kb on + strand, within Rru_A0380at 458.618 kb on + strand, within Rru_A0380at 458.618 kb on + strand, within Rru_A0380at 458.618 kb on + strand, within Rru_A0380at 458.618 kb on + strand, within Rru_A0380at 458.618 kb on + strand, within Rru_A0380at 458.619 kb on - strand, within Rru_A0380at 458.749 kb on - strandat 458.792 kb on - strandat 459.138 kb on + strand, within Rru_A0381at 459.138 kb on + strand, within Rru_A0381at 459.138 kb on + strand, within Rru_A0381at 459.345 kb on + strand, within Rru_A0381at 459.345 kb on + strand, within Rru_A0381at 459.345 kb on + strand, within Rru_A0381at 459.345 kb on + strand, within Rru_A0381at 459.345 kb on + strand, within Rru_A0381at 459.346 kb on - strand, within Rru_A0381at 459.346 kb on - strand, within Rru_A0381at 459.346 kb on - strand, within Rru_A0381at 459.346 kb on - strand, within Rru_A0381at 459.346 kb on - strand, within Rru_A0381at 459.346 kb on - strand, within Rru_A0381at 459.671 kb on - strand, within Rru_A0381at 459.815 kb on + strand, within Rru_A0381at 459.816 kb on - strand, within Rru_A0381at 459.816 kb on - strand, within Rru_A0381at 459.816 kb on - strand, within Rru_A0381at 459.877 kb on - strand, within Rru_A0381at 460.004 kb on - strandat 460.051 kb on + strandat 460.052 kb on - strandat 460.184 kb on + strand, within Rru_A0382at 460.185 kb on - strand, within Rru_A0382at 460.474 kb on + strand, within Rru_A0382at 460.475 kb on - strand, within Rru_A0382at 460.475 kb on - strand, within Rru_A0382at 460.637 kb on + strandat 460.737 kb on - strandat 460.737 kb on - strandat 460.821 kb on - strand, within Rru_A0383at 460.821 kb on - strand, within Rru_A0383at 460.821 kb on - strand, within Rru_A0383at 460.821 kb on - strand, within Rru_A0383at 460.850 kb on + strand, within Rru_A0383at 460.850 kb on + strand, within Rru_A0383at 460.850 kb on + strand, within Rru_A0383at 461.001 kb on + strand, within Rru_A0383at 461.002 kb on - strand, within Rru_A0383

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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457,831 + -0.7
457,831 + -0.3
457,831 + -3.0
457,832 - -2.8
457,832 - +0.5
457,832 - -4.1
457,857 + +0.9
457,868 - +0.0
457,868 - -1.6
457,868 - +2.2
458,005 + Rru_A0379 0.32 -1.3
458,005 + Rru_A0379 0.32 +0.9
458,005 + Rru_A0379 0.32 +0.0
458,153 - Rru_A0379 0.63 -1.8
458,153 - Rru_A0379 0.63 -0.9
458,209 + Rru_A0379 0.75 +0.4
458,215 + Rru_A0379 0.76 +0.9
458,215 + Rru_A0379 0.76 +0.1
458,215 + Rru_A0379 0.76 +0.1
458,215 + Rru_A0379 0.76 +0.7
458,216 - Rru_A0379 0.76 +1.7
458,216 - Rru_A0379 0.76 +1.2
458,216 - Rru_A0379 0.76 -2.1
458,216 - Rru_A0379 0.76 +0.3
458,216 - Rru_A0379 0.76 +0.4
458,216 - Rru_A0379 0.76 +0.1
458,217 + Rru_A0379 0.76 +1.2
458,217 + Rru_A0379 0.76 +1.4
458,217 + Rru_A0379 0.76 -0.4
458,217 + Rru_A0379 0.76 -0.1
458,217 + Rru_A0379 0.76 -3.7
458,217 + Rru_A0379 0.76 -0.3
458,217 + Rru_A0379 0.76 -1.2
458,218 - Rru_A0379 0.76 -0.8
458,218 - Rru_A0379 0.76 +0.9
458,218 - Rru_A0379 0.76 -3.3
458,218 - Rru_A0379 0.76 +0.7
458,218 - Rru_A0379 0.76 -2.2
458,218 - Rru_A0379 0.76 +0.3
458,218 - Rru_A0379 0.76 +1.8
458,221 + Rru_A0379 0.77 -1.2
458,222 - Rru_A0379 0.77 -1.6
458,222 - Rru_A0379 0.77 -0.7
458,222 - Rru_A0379 0.77 +0.7
458,222 - Rru_A0379 0.77 -0.8
458,222 - Rru_A0379 0.77 +0.7
458,222 - Rru_A0379 0.77 -1.1
458,444 - Rru_A0380 0.10 -0.8
458,444 - Rru_A0380 0.10 -1.5
458,444 - Rru_A0380 0.10 -0.3
458,446 + Rru_A0380 0.11 +0.9
458,446 + Rru_A0380 0.11 +0.4
458,446 + Rru_A0380 0.11 -0.5
458,446 + Rru_A0380 0.11 +0.1
458,489 + Rru_A0380 0.23 +0.4
458,489 + Rru_A0380 0.23 +2.3
458,489 + Rru_A0380 0.23 +0.2
458,490 - Rru_A0380 0.23 -3.7
458,490 - Rru_A0380 0.23 +0.3
458,490 - Rru_A0380 0.23 -0.3
458,611 - Rru_A0380 0.57 +1.2
458,618 + Rru_A0380 0.59 +0.2
458,618 + Rru_A0380 0.59 -1.1
458,618 + Rru_A0380 0.59 -4.6
458,618 + Rru_A0380 0.59 +0.5
458,618 + Rru_A0380 0.59 +2.6
458,618 + Rru_A0380 0.59 -1.6
458,618 + Rru_A0380 0.59 -1.5
458,618 + Rru_A0380 0.59 -2.8
458,619 - Rru_A0380 0.59 -0.5
458,749 - -0.4
458,792 - -1.6
459,138 + Rru_A0381 0.27 +0.6
459,138 + Rru_A0381 0.27 +1.0
459,138 + Rru_A0381 0.27 -0.2
459,345 + Rru_A0381 0.43 +0.7
459,345 + Rru_A0381 0.43 +0.4
459,345 + Rru_A0381 0.43 +1.2
459,345 + Rru_A0381 0.43 +0.7
459,345 + Rru_A0381 0.43 +0.1
459,346 - Rru_A0381 0.43 +2.0
459,346 - Rru_A0381 0.43 -0.7
459,346 - Rru_A0381 0.43 +0.7
459,346 - Rru_A0381 0.43 -1.7
459,346 - Rru_A0381 0.43 +1.3
459,346 - Rru_A0381 0.43 +0.3
459,671 - Rru_A0381 0.69 -0.7
459,815 + Rru_A0381 0.81 +1.4
459,816 - Rru_A0381 0.81 -3.8
459,816 - Rru_A0381 0.81 -2.0
459,816 - Rru_A0381 0.81 +0.6
459,877 - Rru_A0381 0.86 -2.5
460,004 - +0.0
460,051 + +0.2
460,052 - +0.8
460,184 + Rru_A0382 0.14 +0.4
460,185 - Rru_A0382 0.14 -0.4
460,474 + Rru_A0382 0.76 +0.6
460,475 - Rru_A0382 0.76 -1.3
460,475 - Rru_A0382 0.76 -3.8
460,637 + -0.0
460,737 - -3.2
460,737 - +1.6
460,821 - Rru_A0383 0.27 +1.9
460,821 - Rru_A0383 0.27 +0.6
460,821 - Rru_A0383 0.27 -2.5
460,821 - Rru_A0383 0.27 -0.8
460,850 + Rru_A0383 0.35 +0.5
460,850 + Rru_A0383 0.35 +1.1
460,850 + Rru_A0383 0.35 +1.0
461,001 + Rru_A0383 0.77 +0.4
461,002 - Rru_A0383 0.77 +0.8

Or see this region's nucleotide sequence