Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0377

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0375 and Rru_A0376 are separated by 27 nucleotidesRru_A0376 and Rru_A0377 overlap by 4 nucleotidesRru_A0377 and Rru_A0378 are separated by 120 nucleotides Rru_A0375: Rru_A0375 - Pirin-like (NCBI), at 451,848 to 452,543 _A0375 Rru_A0376: Rru_A0376 - Transcriptional Regulator, LytR/AlgR family (NCBI), at 452,571 to 453,287 _A0376 Rru_A0377: Rru_A0377 - Signal Transduction Histidine Kinase (STHK), LytS (NCBI), at 453,284 to 455,014 _A0377 Rru_A0378: Rru_A0378 - hypothetical protein (NCBI), at 455,135 to 457,768 _A0378 Position (kb) 453 454 455 456Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 452.403 kb on + strand, within Rru_A0375at 452.403 kb on + strand, within Rru_A0375at 452.403 kb on + strand, within Rru_A0375at 452.403 kb on + strand, within Rru_A0375at 452.403 kb on + strand, within Rru_A0375at 452.404 kb on - strand, within Rru_A0375at 452.404 kb on - strand, within Rru_A0375at 452.404 kb on - strand, within Rru_A0375at 452.404 kb on - strand, within Rru_A0375at 452.405 kb on + strand, within Rru_A0375at 452.406 kb on - strand, within Rru_A0375at 452.541 kb on + strandat 452.710 kb on + strand, within Rru_A0376at 452.711 kb on - strand, within Rru_A0376at 452.711 kb on - strand, within Rru_A0376at 452.711 kb on - strand, within Rru_A0376at 452.711 kb on - strand, within Rru_A0376at 452.803 kb on + strand, within Rru_A0376at 452.803 kb on + strand, within Rru_A0376at 452.803 kb on + strand, within Rru_A0376at 452.803 kb on + strand, within Rru_A0376at 452.803 kb on + strand, within Rru_A0376at 452.804 kb on - strand, within Rru_A0376at 452.804 kb on - strand, within Rru_A0376at 452.804 kb on - strand, within Rru_A0376at 452.804 kb on - strand, within Rru_A0376at 452.804 kb on - strand, within Rru_A0376at 452.804 kb on - strand, within Rru_A0376at 452.804 kb on - strand, within Rru_A0376at 452.998 kb on + strand, within Rru_A0376at 452.999 kb on - strand, within Rru_A0376at 452.999 kb on - strand, within Rru_A0376at 453.034 kb on + strand, within Rru_A0376at 453.034 kb on + strand, within Rru_A0376at 453.034 kb on + strand, within Rru_A0376at 453.034 kb on + strand, within Rru_A0376at 453.035 kb on - strand, within Rru_A0376at 453.035 kb on - strand, within Rru_A0376at 453.043 kb on + strand, within Rru_A0376at 453.129 kb on - strand, within Rru_A0376at 453.132 kb on + strand, within Rru_A0376at 453.132 kb on + strand, within Rru_A0376at 453.132 kb on + strand, within Rru_A0376at 453.132 kb on + strand, within Rru_A0376at 453.132 kb on + strand, within Rru_A0376at 453.133 kb on - strand, within Rru_A0376at 453.133 kb on - strand, within Rru_A0376at 453.133 kb on - strand, within Rru_A0376at 453.133 kb on - strand, within Rru_A0376at 453.399 kb on + strandat 453.399 kb on + strandat 453.400 kb on - strandat 453.478 kb on - strand, within Rru_A0377at 453.478 kb on - strand, within Rru_A0377at 453.702 kb on + strand, within Rru_A0377at 453.702 kb on + strand, within Rru_A0377at 453.703 kb on - strand, within Rru_A0377at 454.024 kb on - strand, within Rru_A0377at 454.024 kb on - strand, within Rru_A0377at 454.024 kb on - strand, within Rru_A0377at 454.119 kb on + strand, within Rru_A0377at 454.143 kb on + strand, within Rru_A0377at 454.143 kb on + strand, within Rru_A0377at 454.143 kb on + strand, within Rru_A0377at 454.144 kb on - strand, within Rru_A0377at 454.144 kb on - strand, within Rru_A0377at 454.189 kb on + strand, within Rru_A0377at 454.207 kb on + strand, within Rru_A0377at 454.208 kb on - strand, within Rru_A0377at 454.208 kb on - strand, within Rru_A0377at 454.208 kb on - strand, within Rru_A0377at 454.290 kb on + strand, within Rru_A0377at 454.291 kb on - strand, within Rru_A0377at 454.291 kb on - strand, within Rru_A0377at 454.336 kb on + strand, within Rru_A0377at 454.630 kb on - strand, within Rru_A0377at 454.630 kb on - strand, within Rru_A0377at 454.711 kb on - strand, within Rru_A0377at 454.834 kb on - strand, within Rru_A0377at 454.834 kb on - strand, within Rru_A0377at 454.870 kb on - strandat 454.870 kb on - strandat 454.882 kb on + strandat 454.882 kb on + strandat 454.883 kb on - strandat 454.945 kb on - strandat 454.945 kb on - strandat 454.959 kb on + strandat 454.959 kb on + strandat 454.960 kb on - strandat 454.960 kb on - strandat 455.034 kb on - strandat 455.034 kb on - strandat 455.057 kb on + strandat 455.271 kb on + strandat 455.393 kb on - strandat 455.393 kb on - strandat 455.529 kb on + strand, within Rru_A0378at 455.529 kb on + strand, within Rru_A0378at 455.529 kb on + strand, within Rru_A0378at 455.530 kb on - strand, within Rru_A0378at 455.530 kb on - strand, within Rru_A0378at 455.530 kb on - strand, within Rru_A0378at 455.847 kb on + strand, within Rru_A0378at 455.847 kb on + strand, within Rru_A0378at 455.848 kb on - strand, within Rru_A0378at 455.848 kb on - strand, within Rru_A0378at 455.848 kb on - strand, within Rru_A0378at 455.910 kb on + strand, within Rru_A0378at 455.910 kb on + strand, within Rru_A0378at 455.911 kb on - strand, within Rru_A0378at 455.911 kb on - strand, within Rru_A0378

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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452,403 + Rru_A0375 0.80 +0.4
452,403 + Rru_A0375 0.80 +1.1
452,403 + Rru_A0375 0.80 -2.2
452,403 + Rru_A0375 0.80 +0.6
452,403 + Rru_A0375 0.80 +1.1
452,404 - Rru_A0375 0.80 -0.7
452,404 - Rru_A0375 0.80 +0.8
452,404 - Rru_A0375 0.80 +1.8
452,404 - Rru_A0375 0.80 -0.6
452,405 + Rru_A0375 0.80 -1.1
452,406 - Rru_A0375 0.80 +0.2
452,541 + +1.0
452,710 + Rru_A0376 0.19 +0.7
452,711 - Rru_A0376 0.20 -3.5
452,711 - Rru_A0376 0.20 -2.9
452,711 - Rru_A0376 0.20 -0.8
452,711 - Rru_A0376 0.20 -3.3
452,803 + Rru_A0376 0.32 +0.5
452,803 + Rru_A0376 0.32 -1.1
452,803 + Rru_A0376 0.32 -1.4
452,803 + Rru_A0376 0.32 +0.6
452,803 + Rru_A0376 0.32 +0.4
452,804 - Rru_A0376 0.32 -2.2
452,804 - Rru_A0376 0.32 -3.8
452,804 - Rru_A0376 0.32 -0.4
452,804 - Rru_A0376 0.32 +1.2
452,804 - Rru_A0376 0.32 +0.3
452,804 - Rru_A0376 0.32 +1.1
452,804 - Rru_A0376 0.32 -2.2
452,998 + Rru_A0376 0.60 +0.8
452,999 - Rru_A0376 0.60 -0.7
452,999 - Rru_A0376 0.60 -2.8
453,034 + Rru_A0376 0.65 -3.8
453,034 + Rru_A0376 0.65 +0.1
453,034 + Rru_A0376 0.65 +0.0
453,034 + Rru_A0376 0.65 +1.4
453,035 - Rru_A0376 0.65 -1.6
453,035 - Rru_A0376 0.65 +0.1
453,043 + Rru_A0376 0.66 +0.6
453,129 - Rru_A0376 0.78 -1.8
453,132 + Rru_A0376 0.78 -0.7
453,132 + Rru_A0376 0.78 -0.0
453,132 + Rru_A0376 0.78 -0.2
453,132 + Rru_A0376 0.78 -1.7
453,132 + Rru_A0376 0.78 +1.9
453,133 - Rru_A0376 0.78 -1.1
453,133 - Rru_A0376 0.78 +0.4
453,133 - Rru_A0376 0.78 -1.4
453,133 - Rru_A0376 0.78 +0.4
453,399 + -1.0
453,399 + -1.1
453,400 - +2.3
453,478 - Rru_A0377 0.11 -0.1
453,478 - Rru_A0377 0.11 -0.1
453,702 + Rru_A0377 0.24 -1.6
453,702 + Rru_A0377 0.24 +0.1
453,703 - Rru_A0377 0.24 +0.9
454,024 - Rru_A0377 0.43 -2.4
454,024 - Rru_A0377 0.43 -3.8
454,024 - Rru_A0377 0.43 +1.6
454,119 + Rru_A0377 0.48 -1.3
454,143 + Rru_A0377 0.50 +1.0
454,143 + Rru_A0377 0.50 -0.5
454,143 + Rru_A0377 0.50 -2.4
454,144 - Rru_A0377 0.50 -0.4
454,144 - Rru_A0377 0.50 -0.2
454,189 + Rru_A0377 0.52 +0.3
454,207 + Rru_A0377 0.53 -4.8
454,208 - Rru_A0377 0.53 -4.1
454,208 - Rru_A0377 0.53 -3.7
454,208 - Rru_A0377 0.53 -3.2
454,290 + Rru_A0377 0.58 +1.7
454,291 - Rru_A0377 0.58 -0.2
454,291 - Rru_A0377 0.58 -0.3
454,336 + Rru_A0377 0.61 +0.1
454,630 - Rru_A0377 0.78 -1.4
454,630 - Rru_A0377 0.78 -4.4
454,711 - Rru_A0377 0.82 -0.8
454,834 - Rru_A0377 0.90 +0.4
454,834 - Rru_A0377 0.90 -0.0
454,870 - -1.6
454,870 - +0.3
454,882 + +1.0
454,882 + +0.7
454,883 - +0.9
454,945 - +0.1
454,945 - +1.3
454,959 + +0.2
454,959 + +1.2
454,960 - +0.5
454,960 - +0.3
455,034 - +0.3
455,034 - -3.3
455,057 + +0.4
455,271 + +1.2
455,393 - -0.9
455,393 - -0.6
455,529 + Rru_A0378 0.15 -1.7
455,529 + Rru_A0378 0.15 -2.2
455,529 + Rru_A0378 0.15 -0.7
455,530 - Rru_A0378 0.15 +0.0
455,530 - Rru_A0378 0.15 -0.3
455,530 - Rru_A0378 0.15 -0.5
455,847 + Rru_A0378 0.27 +0.9
455,847 + Rru_A0378 0.27 -1.3
455,848 - Rru_A0378 0.27 +1.1
455,848 - Rru_A0378 0.27 -0.9
455,848 - Rru_A0378 0.27 -0.8
455,910 + Rru_A0378 0.29 +1.0
455,910 + Rru_A0378 0.29 -1.3
455,911 - Rru_A0378 0.29 +0.2
455,911 - Rru_A0378 0.29 -1.7

Or see this region's nucleotide sequence