Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0307

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0306 and Rru_A0307 overlap by 4 nucleotidesRru_A0307 and Rru_A0308 are separated by 0 nucleotides Rru_A0306: Rru_A0306 - Hydrogenase formation HypD protein (NCBI), at 373,037 to 374,197 _A0306 Rru_A0307: Rru_A0307 - Hydrogenase expression/formation protein (HUPF/HYPC) (NCBI), at 374,194 to 374,424 _A0307 Rru_A0308: Rru_A0308 - Hydrogenase maturation protein HypF (NCBI), at 374,425 to 376,731 _A0308 Position (kb) 374 375Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 373.284 kb on + strand, within Rru_A0306at 373.285 kb on - strand, within Rru_A0306at 373.370 kb on - strand, within Rru_A0306at 373.418 kb on - strand, within Rru_A0306at 373.917 kb on + strand, within Rru_A0306at 373.917 kb on + strand, within Rru_A0306at 373.917 kb on + strand, within Rru_A0306at 373.918 kb on - strand, within Rru_A0306at 373.918 kb on - strand, within Rru_A0306at 373.918 kb on - strand, within Rru_A0306at 373.918 kb on - strand, within Rru_A0306at 374.326 kb on + strand, within Rru_A0307at 374.326 kb on + strand, within Rru_A0307at 374.326 kb on + strand, within Rru_A0307at 374.327 kb on - strand, within Rru_A0307at 374.327 kb on - strand, within Rru_A0307at 374.426 kb on + strandat 374.426 kb on + strandat 374.426 kb on + strandat 374.426 kb on + strandat 374.427 kb on - strandat 374.427 kb on - strandat 374.427 kb on - strandat 374.427 kb on - strandat 374.456 kb on - strandat 374.468 kb on + strandat 374.469 kb on - strandat 374.556 kb on + strandat 374.557 kb on - strandat 374.829 kb on - strand, within Rru_A0308at 374.924 kb on - strand, within Rru_A0308at 375.186 kb on + strand, within Rru_A0308at 375.397 kb on - strand, within Rru_A0308

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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373,284 + Rru_A0306 0.21 +0.7
373,285 - Rru_A0306 0.21 +2.2
373,370 - Rru_A0306 0.29 +1.3
373,418 - Rru_A0306 0.33 -1.3
373,917 + Rru_A0306 0.76 +1.2
373,917 + Rru_A0306 0.76 -1.7
373,917 + Rru_A0306 0.76 +0.8
373,918 - Rru_A0306 0.76 -0.6
373,918 - Rru_A0306 0.76 +0.2
373,918 - Rru_A0306 0.76 -0.3
373,918 - Rru_A0306 0.76 +0.7
374,326 + Rru_A0307 0.57 -0.5
374,326 + Rru_A0307 0.57 +0.5
374,326 + Rru_A0307 0.57 +1.7
374,327 - Rru_A0307 0.58 +1.5
374,327 - Rru_A0307 0.58 -0.4
374,426 + -0.5
374,426 + +0.5
374,426 + +1.0
374,426 + +0.5
374,427 - -2.1
374,427 - +2.0
374,427 - -2.9
374,427 - -1.8
374,456 - -0.6
374,468 + -0.1
374,469 - +1.6
374,556 + -0.4
374,557 - -2.0
374,829 - Rru_A0308 0.18 +1.0
374,924 - Rru_A0308 0.22 -0.3
375,186 + Rru_A0308 0.33 -0.2
375,397 - Rru_A0308 0.42 +0.8

Or see this region's nucleotide sequence