Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0251

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0250 and Rru_A0251 are separated by 2 nucleotidesRru_A0251 and Rru_A0252 are separated by 161 nucleotides Rru_A0250: Rru_A0250 - Xylulokinase (NCBI), at 310,945 to 312,441 _A0250 Rru_A0251: Rru_A0251 - Transcriptional Regulator, AraC family (NCBI), at 312,444 to 313,373 _A0251 Rru_A0252: Rru_A0252 - Zinc-containing alcohol dehydrogenase superfamily (NCBI), at 313,535 to 314,578 _A0252 Position (kb) 312 313 314Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 311.625 kb on + strand, within Rru_A0250at 311.626 kb on - strand, within Rru_A0250at 311.627 kb on + strand, within Rru_A0250at 311.627 kb on + strand, within Rru_A0250at 311.627 kb on + strand, within Rru_A0250at 311.627 kb on + strand, within Rru_A0250at 311.628 kb on - strand, within Rru_A0250at 311.628 kb on - strand, within Rru_A0250at 311.633 kb on + strand, within Rru_A0250at 311.633 kb on + strand, within Rru_A0250at 311.634 kb on - strand, within Rru_A0250at 311.964 kb on - strand, within Rru_A0250at 312.045 kb on + strand, within Rru_A0250at 312.045 kb on + strand, within Rru_A0250at 312.045 kb on + strand, within Rru_A0250at 312.045 kb on + strand, within Rru_A0250at 312.045 kb on + strand, within Rru_A0250at 312.046 kb on - strand, within Rru_A0250at 312.046 kb on - strand, within Rru_A0250at 312.046 kb on - strand, within Rru_A0250at 312.541 kb on + strand, within Rru_A0251at 312.541 kb on + strand, within Rru_A0251at 312.541 kb on + strand, within Rru_A0251at 312.541 kb on + strand, within Rru_A0251at 312.542 kb on - strand, within Rru_A0251at 312.542 kb on - strand, within Rru_A0251at 312.542 kb on - strand, within Rru_A0251at 312.542 kb on - strand, within Rru_A0251at 312.542 kb on - strand, within Rru_A0251at 312.592 kb on + strand, within Rru_A0251at 312.592 kb on + strand, within Rru_A0251at 312.593 kb on - strand, within Rru_A0251at 312.593 kb on - strand, within Rru_A0251at 312.646 kb on + strand, within Rru_A0251at 312.646 kb on + strand, within Rru_A0251at 312.647 kb on - strand, within Rru_A0251at 312.647 kb on - strand, within Rru_A0251at 312.647 kb on - strand, within Rru_A0251at 312.647 kb on - strand, within Rru_A0251at 312.667 kb on + strand, within Rru_A0251at 312.668 kb on - strand, within Rru_A0251at 312.776 kb on - strand, within Rru_A0251at 312.776 kb on - strand, within Rru_A0251at 312.800 kb on + strand, within Rru_A0251at 312.800 kb on + strand, within Rru_A0251at 312.800 kb on + strand, within Rru_A0251at 312.801 kb on - strand, within Rru_A0251at 312.832 kb on + strand, within Rru_A0251at 312.832 kb on + strand, within Rru_A0251at 312.832 kb on + strand, within Rru_A0251at 312.833 kb on - strand, within Rru_A0251at 312.833 kb on - strand, within Rru_A0251at 313.129 kb on + strand, within Rru_A0251at 313.210 kb on + strand, within Rru_A0251at 313.210 kb on + strand, within Rru_A0251at 313.210 kb on + strand, within Rru_A0251at 313.211 kb on - strand, within Rru_A0251at 313.222 kb on + strand, within Rru_A0251at 313.223 kb on - strand, within Rru_A0251at 313.223 kb on - strand, within Rru_A0251at 313.261 kb on + strand, within Rru_A0251at 313.261 kb on + strand, within Rru_A0251at 313.273 kb on + strand, within Rru_A0251at 313.312 kb on + strandat 313.312 kb on + strandat 313.313 kb on - strandat 313.475 kb on - strandat 313.742 kb on + strand, within Rru_A0252at 313.742 kb on + strand, within Rru_A0252at 313.742 kb on + strand, within Rru_A0252at 313.742 kb on + strand, within Rru_A0252at 313.742 kb on + strand, within Rru_A0252at 313.743 kb on - strand, within Rru_A0252at 313.743 kb on - strand, within Rru_A0252at 313.743 kb on - strand, within Rru_A0252at 313.743 kb on - strand, within Rru_A0252at 314.100 kb on + strand, within Rru_A0252at 314.100 kb on + strand, within Rru_A0252at 314.100 kb on + strand, within Rru_A0252at 314.166 kb on + strand, within Rru_A0252at 314.167 kb on - strand, within Rru_A0252at 314.167 kb on - strand, within Rru_A0252at 314.214 kb on + strand, within Rru_A0252at 314.214 kb on + strand, within Rru_A0252at 314.215 kb on - strand, within Rru_A0252at 314.256 kb on + strand, within Rru_A0252at 314.256 kb on + strand, within Rru_A0252at 314.256 kb on + strand, within Rru_A0252at 314.257 kb on - strand, within Rru_A0252at 314.257 kb on - strand, within Rru_A0252at 314.360 kb on + strand, within Rru_A0252at 314.361 kb on - strand, within Rru_A0252

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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311,625 + Rru_A0250 0.45 +0.1
311,626 - Rru_A0250 0.45 -2.0
311,627 + Rru_A0250 0.46 +0.2
311,627 + Rru_A0250 0.46 +1.2
311,627 + Rru_A0250 0.46 -0.6
311,627 + Rru_A0250 0.46 +0.2
311,628 - Rru_A0250 0.46 -0.5
311,628 - Rru_A0250 0.46 +1.5
311,633 + Rru_A0250 0.46 +0.4
311,633 + Rru_A0250 0.46 +0.5
311,634 - Rru_A0250 0.46 +1.3
311,964 - Rru_A0250 0.68 +0.7
312,045 + Rru_A0250 0.73 +2.0
312,045 + Rru_A0250 0.73 +0.6
312,045 + Rru_A0250 0.73 -0.1
312,045 + Rru_A0250 0.73 +0.3
312,045 + Rru_A0250 0.73 +0.4
312,046 - Rru_A0250 0.74 -1.1
312,046 - Rru_A0250 0.74 +0.1
312,046 - Rru_A0250 0.74 -1.5
312,541 + Rru_A0251 0.10 -0.2
312,541 + Rru_A0251 0.10 +0.5
312,541 + Rru_A0251 0.10 +0.1
312,541 + Rru_A0251 0.10 +1.2
312,542 - Rru_A0251 0.11 -2.3
312,542 - Rru_A0251 0.11 -2.1
312,542 - Rru_A0251 0.11 +2.8
312,542 - Rru_A0251 0.11 -1.2
312,542 - Rru_A0251 0.11 +0.1
312,592 + Rru_A0251 0.16 -0.9
312,592 + Rru_A0251 0.16 -1.4
312,593 - Rru_A0251 0.16 -2.9
312,593 - Rru_A0251 0.16 -1.3
312,646 + Rru_A0251 0.22 +1.6
312,646 + Rru_A0251 0.22 +0.0
312,647 - Rru_A0251 0.22 +1.2
312,647 - Rru_A0251 0.22 +0.3
312,647 - Rru_A0251 0.22 -1.9
312,647 - Rru_A0251 0.22 -1.3
312,667 + Rru_A0251 0.24 -0.3
312,668 - Rru_A0251 0.24 -1.2
312,776 - Rru_A0251 0.36 -1.7
312,776 - Rru_A0251 0.36 -2.7
312,800 + Rru_A0251 0.38 -1.8
312,800 + Rru_A0251 0.38 -0.5
312,800 + Rru_A0251 0.38 +0.9
312,801 - Rru_A0251 0.38 -1.1
312,832 + Rru_A0251 0.42 +0.5
312,832 + Rru_A0251 0.42 -3.6
312,832 + Rru_A0251 0.42 +0.0
312,833 - Rru_A0251 0.42 -3.4
312,833 - Rru_A0251 0.42 -2.1
313,129 + Rru_A0251 0.74 -0.5
313,210 + Rru_A0251 0.82 -1.1
313,210 + Rru_A0251 0.82 -0.5
313,210 + Rru_A0251 0.82 -0.2
313,211 - Rru_A0251 0.82 +0.2
313,222 + Rru_A0251 0.84 +0.2
313,223 - Rru_A0251 0.84 +1.6
313,223 - Rru_A0251 0.84 -2.8
313,261 + Rru_A0251 0.88 +0.9
313,261 + Rru_A0251 0.88 +0.8
313,273 + Rru_A0251 0.89 -3.7
313,312 + -2.3
313,312 + -2.6
313,313 - -0.1
313,475 - -1.9
313,742 + Rru_A0252 0.20 -0.4
313,742 + Rru_A0252 0.20 +1.2
313,742 + Rru_A0252 0.20 -0.1
313,742 + Rru_A0252 0.20 -2.4
313,742 + Rru_A0252 0.20 -4.4
313,743 - Rru_A0252 0.20 +0.2
313,743 - Rru_A0252 0.20 +0.3
313,743 - Rru_A0252 0.20 +1.9
313,743 - Rru_A0252 0.20 -0.7
314,100 + Rru_A0252 0.54 -4.4
314,100 + Rru_A0252 0.54 +0.4
314,100 + Rru_A0252 0.54 -2.5
314,166 + Rru_A0252 0.60 +0.8
314,167 - Rru_A0252 0.61 -1.3
314,167 - Rru_A0252 0.61 -0.9
314,214 + Rru_A0252 0.65 +0.6
314,214 + Rru_A0252 0.65 -2.3
314,215 - Rru_A0252 0.65 +0.8
314,256 + Rru_A0252 0.69 +0.3
314,256 + Rru_A0252 0.69 -4.1
314,256 + Rru_A0252 0.69 -2.3
314,257 - Rru_A0252 0.69 +0.1
314,257 - Rru_A0252 0.69 -1.1
314,360 + Rru_A0252 0.79 -1.4
314,361 - Rru_A0252 0.79 -2.6

Or see this region's nucleotide sequence