Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0024

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0022 and Rru_A0023 are separated by 170 nucleotidesRru_A0023 and Rru_A0024 are separated by 124 nucleotidesRru_A0024 and Rru_A0025 are separated by 122 nucleotidesRru_A0025 and Rru_A0026 are separated by 14 nucleotides Rru_A0022: Rru_A0022 - Glutathione S-transferase-like (NCBI), at 27,098 to 27,766 _A0022 Rru_A0023: Rru_A0023 - hypothetical protein (NCBI), at 27,937 to 28,329 _A0023 Rru_A0024: Rru_A0024 - peptidase (NCBI), at 28,454 to 29,599 _A0024 Rru_A0025: Rru_A0025 - hypothetical protein (NCBI), at 29,722 to 30,261 _A0025 Rru_A0026: Rru_A0026 - hypothetical protein (NCBI), at 30,276 to 31,619 _A0026 Position (kb) 28 29 30Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 27.764 kb on + strandat 27.765 kb on - strandat 27.765 kb on - strandat 27.843 kb on - strandat 28.048 kb on - strand, within Rru_A0023at 28.048 kb on - strand, within Rru_A0023at 28.430 kb on + strandat 28.430 kb on + strandat 28.431 kb on - strandat 28.867 kb on + strand, within Rru_A0024at 28.867 kb on + strand, within Rru_A0024at 28.867 kb on + strand, within Rru_A0024at 29.111 kb on + strand, within Rru_A0024at 29.111 kb on + strand, within Rru_A0024at 29.264 kb on - strand, within Rru_A0024at 29.264 kb on - strand, within Rru_A0024at 29.264 kb on - strand, within Rru_A0024at 29.393 kb on - strand, within Rru_A0024at 29.635 kb on + strandat 29.635 kb on + strandat 29.635 kb on + strandat 29.636 kb on - strandat 29.636 kb on - strandat 29.636 kb on - strandat 29.636 kb on - strandat 29.636 kb on - strandat 29.640 kb on + strandat 29.641 kb on - strandat 29.779 kb on - strand, within Rru_A0025at 30.110 kb on - strand, within Rru_A0025at 30.110 kb on - strand, within Rru_A0025at 30.110 kb on - strand, within Rru_A0025at 30.110 kb on - strand, within Rru_A0025at 30.110 kb on - strand, within Rru_A0025at 30.110 kb on - strand, within Rru_A0025at 30.271 kb on + strandat 30.271 kb on + strandat 30.271 kb on + strandat 30.271 kb on + strandat 30.271 kb on + strandat 30.272 kb on - strandat 30.378 kb on + strandat 30.378 kb on + strandat 30.379 kb on - strandat 30.379 kb on - strandat 30.379 kb on - strandat 30.379 kb on - strandat 30.379 kb on - strandat 30.379 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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27,764 + -1.8
27,765 - +0.3
27,765 - +0.5
27,843 - +0.7
28,048 - Rru_A0023 0.28 -0.4
28,048 - Rru_A0023 0.28 -2.1
28,430 + -3.1
28,430 + +0.5
28,431 - +0.7
28,867 + Rru_A0024 0.36 -1.8
28,867 + Rru_A0024 0.36 -3.9
28,867 + Rru_A0024 0.36 -3.0
29,111 + Rru_A0024 0.57 -2.2
29,111 + Rru_A0024 0.57 +0.2
29,264 - Rru_A0024 0.71 +0.5
29,264 - Rru_A0024 0.71 -0.2
29,264 - Rru_A0024 0.71 -0.7
29,393 - Rru_A0024 0.82 +1.2
29,635 + +0.0
29,635 + -1.4
29,635 + +0.4
29,636 - +0.9
29,636 - -1.1
29,636 - +0.8
29,636 - -1.3
29,636 - +2.5
29,640 + +0.3
29,641 - -1.2
29,779 - Rru_A0025 0.11 -0.1
30,110 - Rru_A0025 0.72 +0.2
30,110 - Rru_A0025 0.72 -2.4
30,110 - Rru_A0025 0.72 +0.8
30,110 - Rru_A0025 0.72 -1.8
30,110 - Rru_A0025 0.72 -1.0
30,110 - Rru_A0025 0.72 +0.3
30,271 + +0.8
30,271 + +1.3
30,271 + -1.8
30,271 + -3.9
30,271 + -2.3
30,272 - -2.5
30,378 + +0.3
30,378 + -1.1
30,379 - +0.5
30,379 - -1.5
30,379 - -3.2
30,379 - +0.7
30,379 - -0.5
30,379 - +0.0

Or see this region's nucleotide sequence