Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1347

Experiment: Tetracycline 0.00125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetracycline 0.00125 mg/ml
1,379,937	+				+0.7
1,379,975	+				+1.0
1,380,052	+				-1.6
1,380,057	+				-0.3
1,380,057	+				-0.0
1,380,065	-				+2.0
1,380,065	-				+3.8
1,380,095	+				+1.4
1,380,105	-				+0.8
1,380,107	+				-0.0
1,380,132	-	ldhA	Synpcc7942_1347	0.11	-0.0
1,380,225	+	ldhA	Synpcc7942_1347	0.21	+1.0
1,380,248	-	ldhA	Synpcc7942_1347	0.23	+1.7
1,380,288	+	ldhA	Synpcc7942_1347	0.27	+1.0
1,380,343	-	ldhA	Synpcc7942_1347	0.33	+3.0
1,380,375	+	ldhA	Synpcc7942_1347	0.36	-1.0
1,380,390	-	ldhA	Synpcc7942_1347	0.37	-0.0
1,380,403	+	ldhA	Synpcc7942_1347	0.39	+1.9
1,380,428	+	ldhA	Synpcc7942_1347	0.41	+1.9
1,380,448	+				-0.0
1,380,456	-	ldhA	Synpcc7942_1347	0.44	+1.2
1,380,461	-	ldhA	Synpcc7942_1347	0.44	+1.0
1,380,492	+	ldhA	Synpcc7942_1347	0.47	-0.6
1,380,512	-	ldhA	Synpcc7942_1347	0.49	+1.8
1,380,521	-	ldhA	Synpcc7942_1347	0.50	+0.4
1,380,540	+	ldhA	Synpcc7942_1347	0.52	+1.5
1,380,585	+	ldhA	Synpcc7942_1347	0.57	-1.0
1,380,592	-	ldhA	Synpcc7942_1347	0.58	+1.3
1,380,599	-	ldhA	Synpcc7942_1347	0.58	+0.3
1,380,599	-	ldhA	Synpcc7942_1347	0.58	+2.3
1,380,600	-	ldhA	Synpcc7942_1347	0.58	+1.0
1,380,610	+	ldhA	Synpcc7942_1347	0.59	+1.8
1,380,625	+	ldhA	Synpcc7942_1347	0.61	+0.7
1,380,647	-	ldhA	Synpcc7942_1347	0.63	+1.5
1,380,675	+	ldhA	Synpcc7942_1347	0.66	+1.8
1,380,683	-	ldhA	Synpcc7942_1347	0.67	+0.5
1,380,723	+	ldhA	Synpcc7942_1347	0.71	+1.6
1,380,729	+	ldhA	Synpcc7942_1347	0.71	-1.0
1,380,734	+	ldhA	Synpcc7942_1347	0.72	+3.0
1,380,734	+	ldhA	Synpcc7942_1347	0.72	+3.1
1,380,737	-	ldhA	Synpcc7942_1347	0.72	+1.5
1,380,737	-	ldhA	Synpcc7942_1347	0.72	+1.0
1,380,768	-	ldhA	Synpcc7942_1347	0.75	+2.5
1,380,780	+	ldhA	Synpcc7942_1347	0.76	+2.4
1,380,780	+	ldhA	Synpcc7942_1347	0.76	-0.6
1,380,785	+	ldhA	Synpcc7942_1347	0.77	-0.6
1,380,788	-	ldhA	Synpcc7942_1347	0.77	+0.5
1,380,793	-	ldhA	Synpcc7942_1347	0.78	+1.3
1,380,798	-	ldhA	Synpcc7942_1347	0.78	+2.5
1,380,808	-	ldhA	Synpcc7942_1347	0.79	+1.1
1,380,823	-	ldhA	Synpcc7942_1347	0.81	+1.5
1,380,824	-	ldhA	Synpcc7942_1347	0.81	-0.0
1,380,828	+	ldhA	Synpcc7942_1347	0.81	+0.5
1,380,828	+	ldhA	Synpcc7942_1347	0.81	+0.3
1,380,828	+	ldhA	Synpcc7942_1347	0.81	+1.0
1,380,836	-	ldhA	Synpcc7942_1347	0.82	+1.0
1,380,851	-	ldhA	Synpcc7942_1347	0.84	-0.5
1,380,863	+	ldhA	Synpcc7942_1347	0.85	+1.5
1,380,865	+	ldhA	Synpcc7942_1347	0.85	-1.4
1,380,865	+	ldhA	Synpcc7942_1347	0.85	+2.0
1,380,865	+	ldhA	Synpcc7942_1347	0.85	+2.2
1,380,873	-	ldhA	Synpcc7942_1347	0.86	-1.0
1,380,873	-				-0.0
1,380,873	-	ldhA	Synpcc7942_1347	0.86	+2.3
1,380,873	-	ldhA	Synpcc7942_1347	0.86	+0.3
1,380,873	-	ldhA	Synpcc7942_1347	0.86	+3.8
1,380,873	-	ldhA	Synpcc7942_1347	0.86	-0.0
1,380,875	+	ldhA	Synpcc7942_1347	0.86	+0.1
1,380,920	+				+3.4
1,380,981	-				-0.0
1,380,987	-				+0.4
1,380,987	-				+1.4
1,380,987	-				+1.2
1,381,030	+				-0.6
1,381,050	-				+0.1
1,381,052	+				+0.3
1,381,056	+				-1.6
1,381,060	-				+1.5
1,381,149	-		Synpcc7942_1348	0.39	+1.8
1,381,169	+		Synpcc7942_1348	0.46	+3.1
1,381,177	-		Synpcc7942_1348	0.48	+1.5
1,381,177	-		Synpcc7942_1348	0.48	-1.0
1,381,177	-		Synpcc7942_1348	0.48	+1.5
1,381,177	-		Synpcc7942_1348	0.48	-1.0
1,381,193	-		Synpcc7942_1348	0.54	+1.0
1,381,209	-		Synpcc7942_1348	0.59	+2.2
1,381,219	-		Synpcc7942_1348	0.62	+1.0
1,381,253	-		Synpcc7942_1348	0.74	+1.5
1,381,319	+				+1.0
1,381,333	-				+1.0
1,381,335	+				+1.6
1,381,343	-				+2.1
1,381,355	+				+1.6
1,381,365	+				-0.0
1,381,365	+				+2.5
1,381,370	+				-1.0
1,381,370	+				-0.7
1,381,378	-				+1.0
1,381,389	+				-1.0
1,381,400	+				+0.8
1,381,408	-				+0.8
1,381,429	-				+0.9
1,381,478	-		Synpcc7942_1349	0.16	+1.7
1,381,481	+		Synpcc7942_1349	0.17	+0.7
1,381,482	-		Synpcc7942_1349	0.17	+1.2
1,381,512	+		Synpcc7942_1349	0.21	+1.0
1,381,520	-		Synpcc7942_1349	0.22	+1.1
1,381,582	+		Synpcc7942_1349	0.31	+0.5
1,381,590	-		Synpcc7942_1349	0.32	+0.7
1,381,590	-		Synpcc7942_1349	0.32	-0.6
1,381,604	+		Synpcc7942_1349	0.34	+1.4
1,381,657	-		Synpcc7942_1349	0.42	-1.0
1,381,685	-		Synpcc7942_1349	0.46	+2.1
1,381,713	+		Synpcc7942_1349	0.50	+1.4
1,381,736	-		Synpcc7942_1349	0.54	-0.5
1,381,803	+		Synpcc7942_1349	0.63	+1.0
1,381,813	+		Synpcc7942_1349	0.65	+2.0
1,381,821	-		Synpcc7942_1349	0.66	-0.5
1,381,821	-		Synpcc7942_1349	0.66	+2.0
1,381,821	-		Synpcc7942_1349	0.66	-0.0
1,381,827	+		Synpcc7942_1349	0.67	-1.6
1,381,838	+		Synpcc7942_1349	0.69	-0.0
1,381,838	+		Synpcc7942_1349	0.69	+0.4
1,381,838	+		Synpcc7942_1349	0.69	+2.1
1,381,838	+		Synpcc7942_1349	0.69	+1.3
1,381,843	+		Synpcc7942_1349	0.69	+1.3
1,381,846	-				-1.0
1,381,851	-		Synpcc7942_1349	0.70	+1.2
1,381,856	-		Synpcc7942_1349	0.71	+3.3
1,381,883	+		Synpcc7942_1349	0.75	+1.8
1,381,891	-		Synpcc7942_1349	0.76	+2.0
1,381,897	-		Synpcc7942_1349	0.77	+2.0
1,381,936	+		Synpcc7942_1349	0.83	+3.0
1,381,947	+		Synpcc7942_1349	0.84	+2.0
1,381,950	-		Synpcc7942_1349	0.85	-0.5
1,381,952	+		Synpcc7942_1349	0.85	+1.0
1,381,952	+		Synpcc7942_1349	0.85	+1.6
1,381,955	-		Synpcc7942_1349	0.86	+1.4
1,381,957	+		Synpcc7942_1349	0.86	-0.3
1,381,957	+		Synpcc7942_1349	0.86	-0.7
1,381,957	+		Synpcc7942_1349	0.86	+2.5
1,381,972	+		Synpcc7942_1349	0.88	-1.0
1,381,972	+		Synpcc7942_1349	0.88	+1.0
1,381,994	-				-0.3
1,381,998	+				+1.5
1,381,998	+				-0.6
1,382,000	-				+1.7
1,382,008	+				+0.5