Experiment: Tetracycline 0.00125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0948 and Synpcc7942_0949 overlap by 1 nucleotides Synpcc7942_0949 and Synpcc7942_0950 overlap by 4 nucleotides Synpcc7942_0950 and nadC are separated by 99 nucleotides
Synpcc7942_0948: Synpcc7942_0948 - permease protein of sugar ABC transporter, at 956,719 to 957,546
_0948
Synpcc7942_0949: Synpcc7942_0949 - permease protein of sugar ABC transporter, at 957,546 to 958,424
_0949
Synpcc7942_0950: Synpcc7942_0950 - putative multiple sugar transport system substrate-binding protein, at 958,421 to 959,737
_0950
Synpcc7942_0951: nadC - nicotinate-nucleotide pyrophosphorylase, at 959,837 to 960,685
nadC
Position (kb) 958
959
960 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 957.421 kb on - strand, within Synpcc7942_0948 at 957.454 kb on - strand, within Synpcc7942_0948 at 957.464 kb on + strand at 957.482 kb on - strand at 957.486 kb on + strand at 957.486 kb on + strand at 957.491 kb on + strand at 957.491 kb on + strand at 957.493 kb on + strand at 957.499 kb on - strand at 957.499 kb on - strand at 957.501 kb on + strand at 957.501 kb on + strand at 957.508 kb on + strand at 957.509 kb on - strand at 957.534 kb on + strand at 957.549 kb on - strand at 957.553 kb on + strand at 957.564 kb on + strand at 957.586 kb on + strand at 957.586 kb on + strand at 957.591 kb on + strand at 957.594 kb on - strand at 957.594 kb on - strand at 957.594 kb on - strand at 957.614 kb on + strand at 957.623 kb on - strand at 957.664 kb on - strand, within Synpcc7942_0949 at 957.669 kb on + strand, within Synpcc7942_0949 at 957.669 kb on - strand, within Synpcc7942_0949 at 957.676 kb on + strand, within Synpcc7942_0949 at 957.678 kb on + strand, within Synpcc7942_0949 at 957.678 kb on + strand, within Synpcc7942_0949 at 957.678 kb on + strand, within Synpcc7942_0949 at 957.684 kb on + strand, within Synpcc7942_0949 at 957.692 kb on + strand, within Synpcc7942_0949 at 957.692 kb on - strand, within Synpcc7942_0949 at 957.692 kb on - strand, within Synpcc7942_0949 at 957.693 kb on - strand, within Synpcc7942_0949 at 957.700 kb on - strand, within Synpcc7942_0949 at 957.700 kb on - strand, within Synpcc7942_0949 at 957.700 kb on - strand, within Synpcc7942_0949 at 957.700 kb on - strand, within Synpcc7942_0949 at 957.707 kb on - strand, within Synpcc7942_0949 at 957.707 kb on - strand, within Synpcc7942_0949 at 957.736 kb on + strand, within Synpcc7942_0949 at 957.744 kb on - strand, within Synpcc7942_0949 at 957.755 kb on + strand, within Synpcc7942_0949 at 957.755 kb on + strand, within Synpcc7942_0949 at 957.757 kb on + strand, within Synpcc7942_0949 at 957.762 kb on + strand, within Synpcc7942_0949 at 957.762 kb on + strand, within Synpcc7942_0949 at 957.763 kb on - strand, within Synpcc7942_0949 at 957.763 kb on - strand, within Synpcc7942_0949 at 957.763 kb on - strand, within Synpcc7942_0949 at 957.770 kb on - strand, within Synpcc7942_0949 at 957.770 kb on - strand, within Synpcc7942_0949 at 957.770 kb on - strand, within Synpcc7942_0949 at 957.770 kb on - strand, within Synpcc7942_0949 at 957.815 kb on - strand, within Synpcc7942_0949 at 957.815 kb on - strand, within Synpcc7942_0949 at 957.816 kb on - strand, within Synpcc7942_0949 at 957.827 kb on + strand, within Synpcc7942_0949 at 957.835 kb on - strand, within Synpcc7942_0949 at 957.839 kb on + strand, within Synpcc7942_0949 at 957.847 kb on - strand, within Synpcc7942_0949 at 957.853 kb on - strand, within Synpcc7942_0949 at 957.854 kb on + strand, within Synpcc7942_0949 at 957.862 kb on - strand, within Synpcc7942_0949 at 957.862 kb on - strand, within Synpcc7942_0949 at 957.862 kb on - strand at 957.862 kb on - strand, within Synpcc7942_0949 at 957.960 kb on + strand, within Synpcc7942_0949 at 957.963 kb on + strand, within Synpcc7942_0949 at 957.963 kb on + strand, within Synpcc7942_0949 at 957.965 kb on + strand, within Synpcc7942_0949 at 957.965 kb on + strand, within Synpcc7942_0949 at 957.965 kb on + strand, within Synpcc7942_0949 at 957.968 kb on - strand, within Synpcc7942_0949 at 957.973 kb on - strand, within Synpcc7942_0949 at 957.973 kb on - strand, within Synpcc7942_0949 at 957.996 kb on + strand, within Synpcc7942_0949 at 958.045 kb on + strand, within Synpcc7942_0949 at 958.074 kb on + strand, within Synpcc7942_0949 at 958.074 kb on + strand, within Synpcc7942_0949 at 958.074 kb on + strand, within Synpcc7942_0949 at 958.082 kb on - strand, within Synpcc7942_0949 at 958.082 kb on - strand, within Synpcc7942_0949 at 958.082 kb on - strand, within Synpcc7942_0949 at 958.082 kb on - strand, within Synpcc7942_0949 at 958.082 kb on - strand, within Synpcc7942_0949 at 958.107 kb on + strand, within Synpcc7942_0949 at 958.141 kb on - strand, within Synpcc7942_0949 at 958.180 kb on + strand, within Synpcc7942_0949 at 958.180 kb on + strand, within Synpcc7942_0949 at 958.225 kb on + strand, within Synpcc7942_0949 at 958.230 kb on - strand, within Synpcc7942_0949 at 958.233 kb on - strand at 958.233 kb on - strand, within Synpcc7942_0949 at 958.235 kb on + strand, within Synpcc7942_0949 at 958.236 kb on - strand, within Synpcc7942_0949 at 958.238 kb on - strand at 958.240 kb on + strand at 958.240 kb on + strand, within Synpcc7942_0949 at 958.240 kb on + strand, within Synpcc7942_0949 at 958.248 kb on - strand, within Synpcc7942_0949 at 958.273 kb on - strand, within Synpcc7942_0949 at 958.287 kb on + strand, within Synpcc7942_0949 at 958.309 kb on + strand, within Synpcc7942_0949 at 958.345 kb on + strand at 958.350 kb on + strand at 958.352 kb on + strand at 958.352 kb on + strand at 958.362 kb on + strand at 958.362 kb on + strand at 958.370 kb on + strand at 958.370 kb on - strand at 958.370 kb on - strand at 958.378 kb on + strand at 958.403 kb on - strand at 958.448 kb on + strand at 958.449 kb on - strand at 958.464 kb on - strand at 958.476 kb on + strand at 958.476 kb on + strand at 958.484 kb on - strand at 958.550 kb on - strand at 958.585 kb on - strand, within Synpcc7942_0950 at 958.623 kb on + strand, within Synpcc7942_0950 at 958.631 kb on - strand, within Synpcc7942_0950 at 958.657 kb on + strand, within Synpcc7942_0950 at 958.684 kb on + strand, within Synpcc7942_0950 at 958.684 kb on + strand, within Synpcc7942_0950 at 958.716 kb on - strand, within Synpcc7942_0950 at 958.718 kb on + strand, within Synpcc7942_0950 at 958.721 kb on - strand, within Synpcc7942_0950 at 958.723 kb on + strand, within Synpcc7942_0950 at 958.723 kb on + strand, within Synpcc7942_0950 at 958.731 kb on - strand, within Synpcc7942_0950 at 958.803 kb on + strand, within Synpcc7942_0950 at 958.811 kb on - strand, within Synpcc7942_0950 at 958.811 kb on - strand, within Synpcc7942_0950 at 958.816 kb on - strand, within Synpcc7942_0950 at 958.820 kb on + strand, within Synpcc7942_0950 at 958.839 kb on + strand, within Synpcc7942_0950 at 958.847 kb on - strand, within Synpcc7942_0950 at 958.858 kb on - strand, within Synpcc7942_0950 at 958.882 kb on - strand, within Synpcc7942_0950 at 958.911 kb on + strand, within Synpcc7942_0950 at 958.915 kb on - strand, within Synpcc7942_0950 at 958.936 kb on + strand, within Synpcc7942_0950 at 958.970 kb on - strand, within Synpcc7942_0950 at 958.970 kb on - strand, within Synpcc7942_0950 at 958.985 kb on - strand, within Synpcc7942_0950 at 959.006 kb on - strand, within Synpcc7942_0950 at 959.029 kb on + strand, within Synpcc7942_0950 at 959.114 kb on + strand, within Synpcc7942_0950 at 959.114 kb on + strand, within Synpcc7942_0950 at 959.114 kb on + strand at 959.122 kb on - strand, within Synpcc7942_0950 at 959.122 kb on - strand, within Synpcc7942_0950 at 959.122 kb on - strand, within Synpcc7942_0950 at 959.129 kb on + strand, within Synpcc7942_0950 at 959.129 kb on - strand, within Synpcc7942_0950 at 959.140 kb on + strand, within Synpcc7942_0950 at 959.140 kb on + strand, within Synpcc7942_0950 at 959.140 kb on + strand, within Synpcc7942_0950 at 959.148 kb on - strand, within Synpcc7942_0950 at 959.148 kb on - strand, within Synpcc7942_0950 at 959.156 kb on + strand, within Synpcc7942_0950 at 959.156 kb on + strand, within Synpcc7942_0950 at 959.158 kb on - strand, within Synpcc7942_0950 at 959.177 kb on + strand, within Synpcc7942_0950 at 959.195 kb on + strand, within Synpcc7942_0950 at 959.219 kb on - strand, within Synpcc7942_0950 at 959.252 kb on - strand, within Synpcc7942_0950 at 959.317 kb on - strand, within Synpcc7942_0950 at 959.317 kb on - strand, within Synpcc7942_0950 at 959.365 kb on + strand, within Synpcc7942_0950 at 959.434 kb on + strand, within Synpcc7942_0950 at 959.442 kb on - strand, within Synpcc7942_0950 at 959.468 kb on - strand, within Synpcc7942_0950 at 959.468 kb on - strand, within Synpcc7942_0950 at 959.505 kb on + strand, within Synpcc7942_0950 at 959.525 kb on + strand, within Synpcc7942_0950 at 959.570 kb on + strand, within Synpcc7942_0950 at 959.645 kb on - strand at 959.645 kb on - strand at 959.645 kb on - strand at 959.645 kb on - strand at 959.661 kb on + strand at 959.661 kb on - strand at 959.661 kb on - strand at 959.666 kb on + strand at 959.692 kb on - strand at 959.698 kb on + strand at 959.724 kb on + strand at 959.745 kb on + strand at 959.745 kb on + strand at 959.745 kb on + strand at 959.745 kb on + strand at 959.753 kb on - strand at 959.753 kb on - strand at 959.753 kb on - strand at 959.753 kb on - strand at 959.753 kb on - strand at 959.753 kb on - strand at 959.772 kb on + strand at 959.782 kb on + strand at 959.790 kb on - strand at 959.790 kb on - strand at 959.819 kb on + strand at 959.847 kb on + strand at 959.850 kb on - strand at 959.921 kb on + strand at 959.922 kb on + strand, within nadC at 959.923 kb on - strand, within nadC at 959.930 kb on - strand, within nadC at 960.002 kb on + strand, within nadC at 960.018 kb on + strand, within nadC at 960.094 kb on + strand, within nadC at 960.103 kb on + strand, within nadC at 960.118 kb on + strand, within nadC at 960.126 kb on - strand, within nadC at 960.126 kb on - strand, within nadC at 960.137 kb on + strand, within nadC at 960.146 kb on - strand, within nadC at 960.265 kb on + strand, within nadC at 960.273 kb on - strand, within nadC at 960.309 kb on + strand, within nadC at 960.435 kb on + strand, within nadC at 960.443 kb on - strand, within nadC at 960.687 kb on + strand at 960.687 kb on + strand at 960.695 kb on - strand at 960.695 kb on - strand at 960.707 kb on - strand at 960.707 kb on - strand at 960.717 kb on - strand at 960.727 kb on - strand at 960.735 kb on + strand at 960.735 kb on + strand at 960.737 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.00125 mg/ml remove 957,421 - Synpcc7942_0948 0.85 +2.9 957,454 - Synpcc7942_0948 0.89 +0.9 957,464 + -0.1 957,482 - +0.2 957,486 + -0.1 957,486 + +0.9 957,491 + -1.1 957,491 + +3.4 957,493 + +1.7 957,499 - +2.2 957,499 - +1.9 957,501 + +1.2 957,501 + +0.5 957,508 + +0.9 957,509 - +1.1 957,534 + +0.5 957,549 - +1.3 957,553 + +1.5 957,564 + -0.4 957,586 + +2.0 957,586 + +2.2 957,591 + +0.4 957,594 - -1.1 957,594 - +1.5 957,594 - -0.6 957,614 + +0.8 957,623 - +0.5 957,664 - Synpcc7942_0949 0.13 +0.6 957,669 + Synpcc7942_0949 0.14 -0.7 957,669 - Synpcc7942_0949 0.14 -0.5 957,676 + Synpcc7942_0949 0.15 +2.2 957,678 + Synpcc7942_0949 0.15 -1.7 957,678 + Synpcc7942_0949 0.15 -0.1 957,678 + Synpcc7942_0949 0.15 +1.1 957,684 + Synpcc7942_0949 0.16 +2.6 957,692 + Synpcc7942_0949 0.17 +2.2 957,692 - Synpcc7942_0949 0.17 -2.1 957,692 - Synpcc7942_0949 0.17 +0.9 957,693 - Synpcc7942_0949 0.17 +1.4 957,700 - Synpcc7942_0949 0.18 +3.4 957,700 - Synpcc7942_0949 0.18 +2.6 957,700 - Synpcc7942_0949 0.18 -0.1 957,700 - Synpcc7942_0949 0.18 +0.0 957,707 - Synpcc7942_0949 0.18 -1.1 957,707 - Synpcc7942_0949 0.18 +1.7 957,736 + Synpcc7942_0949 0.22 +1.5 957,744 - Synpcc7942_0949 0.23 +1.5 957,755 + Synpcc7942_0949 0.24 -0.1 957,755 + Synpcc7942_0949 0.24 +1.1 957,757 + Synpcc7942_0949 0.24 +1.0 957,762 + Synpcc7942_0949 0.25 +2.6 957,762 + Synpcc7942_0949 0.25 -1.7 957,763 - Synpcc7942_0949 0.25 +2.2 957,763 - Synpcc7942_0949 0.25 +2.1 957,763 - Synpcc7942_0949 0.25 -0.1 957,770 - Synpcc7942_0949 0.25 -0.7 957,770 - Synpcc7942_0949 0.25 -1.1 957,770 - Synpcc7942_0949 0.25 -2.4 957,770 - Synpcc7942_0949 0.25 +1.5 957,815 - Synpcc7942_0949 0.31 -0.1 957,815 - Synpcc7942_0949 0.31 +1.8 957,816 - Synpcc7942_0949 0.31 +1.9 957,827 + Synpcc7942_0949 0.32 +1.9 957,835 - Synpcc7942_0949 0.33 +0.8 957,839 + Synpcc7942_0949 0.33 -0.1 957,847 - Synpcc7942_0949 0.34 +2.5 957,853 - Synpcc7942_0949 0.35 +0.9 957,854 + Synpcc7942_0949 0.35 +0.5 957,862 - Synpcc7942_0949 0.36 +0.9 957,862 - Synpcc7942_0949 0.36 +1.2 957,862 - +0.9 957,862 - Synpcc7942_0949 0.36 +0.9 957,960 + Synpcc7942_0949 0.47 -1.9 957,963 + Synpcc7942_0949 0.47 -1.1 957,963 + Synpcc7942_0949 0.47 +1.4 957,965 + Synpcc7942_0949 0.48 +0.8 957,965 + Synpcc7942_0949 0.48 -0.1 957,965 + Synpcc7942_0949 0.48 +0.9 957,968 - Synpcc7942_0949 0.48 +2.2 957,973 - Synpcc7942_0949 0.49 +0.1 957,973 - Synpcc7942_0949 0.49 +1.9 957,996 + Synpcc7942_0949 0.51 +2.1 958,045 + Synpcc7942_0949 0.57 +0.9 958,074 + Synpcc7942_0949 0.60 -0.1 958,074 + Synpcc7942_0949 0.60 -0.7 958,074 + Synpcc7942_0949 0.60 -1.1 958,082 - Synpcc7942_0949 0.61 +2.5 958,082 - Synpcc7942_0949 0.61 +1.9 958,082 - Synpcc7942_0949 0.61 +1.6 958,082 - Synpcc7942_0949 0.61 +0.4 958,082 - Synpcc7942_0949 0.61 +1.2 958,107 + Synpcc7942_0949 0.64 +0.2 958,141 - Synpcc7942_0949 0.68 +1.5 958,180 + Synpcc7942_0949 0.72 +0.5 958,180 + Synpcc7942_0949 0.72 -0.1 958,225 + Synpcc7942_0949 0.77 +0.9 958,230 - Synpcc7942_0949 0.78 +0.5 958,233 - +0.9 958,233 - Synpcc7942_0949 0.78 +2.1 958,235 + Synpcc7942_0949 0.78 +1.3 958,236 - Synpcc7942_0949 0.78 -0.1 958,238 - +0.9 958,240 + +0.9 958,240 + Synpcc7942_0949 0.79 -0.3 958,240 + Synpcc7942_0949 0.79 +2.5 958,248 - Synpcc7942_0949 0.80 +1.2 958,273 - Synpcc7942_0949 0.83 +0.7 958,287 + Synpcc7942_0949 0.84 -0.1 958,309 + Synpcc7942_0949 0.87 -0.7 958,345 + +1.5 958,350 + -2.7 958,352 + +0.5 958,352 + +1.5 958,362 + -1.1 958,362 + -2.4 958,370 + +0.6 958,370 - +1.9 958,370 - -1.1 958,378 + +0.9 958,403 - +0.7 958,448 + -0.1 958,449 - +1.9 958,464 - -0.1 958,476 + +1.9 958,476 + +1.1 958,484 - +1.5 958,550 - +2.5 958,585 - Synpcc7942_0950 0.12 +1.5 958,623 + Synpcc7942_0950 0.15 -0.1 958,631 - Synpcc7942_0950 0.16 +0.9 958,657 + Synpcc7942_0950 0.18 +0.3 958,684 + Synpcc7942_0950 0.20 -0.1 958,684 + Synpcc7942_0950 0.20 +0.3 958,716 - Synpcc7942_0950 0.22 +1.1 958,718 + Synpcc7942_0950 0.23 +1.2 958,721 - Synpcc7942_0950 0.23 +1.7 958,723 + Synpcc7942_0950 0.23 -0.1 958,723 + Synpcc7942_0950 0.23 -2.1 958,731 - Synpcc7942_0950 0.24 +1.0 958,803 + Synpcc7942_0950 0.29 +2.2 958,811 - Synpcc7942_0950 0.30 +0.9 958,811 - Synpcc7942_0950 0.30 -0.1 958,816 - Synpcc7942_0950 0.30 +3.2 958,820 + Synpcc7942_0950 0.30 -1.1 958,839 + Synpcc7942_0950 0.32 +2.4 958,847 - Synpcc7942_0950 0.32 +1.8 958,858 - Synpcc7942_0950 0.33 -0.5 958,882 - Synpcc7942_0950 0.35 -0.4 958,911 + Synpcc7942_0950 0.37 -0.1 958,915 - Synpcc7942_0950 0.38 -2.1 958,936 + Synpcc7942_0950 0.39 +1.6 958,970 - Synpcc7942_0950 0.42 -0.5 958,970 - Synpcc7942_0950 0.42 +3.1 958,985 - Synpcc7942_0950 0.43 +0.5 959,006 - Synpcc7942_0950 0.44 +2.2 959,029 + Synpcc7942_0950 0.46 -0.1 959,114 + Synpcc7942_0950 0.53 +1.1 959,114 + Synpcc7942_0950 0.53 -1.1 959,114 + -0.1 959,122 - Synpcc7942_0950 0.53 +0.5 959,122 - Synpcc7942_0950 0.53 -0.8 959,122 - Synpcc7942_0950 0.53 -0.1 959,129 + Synpcc7942_0950 0.54 +1.4 959,129 - Synpcc7942_0950 0.54 +0.9 959,140 + Synpcc7942_0950 0.55 +2.1 959,140 + Synpcc7942_0950 0.55 +1.0 959,140 + Synpcc7942_0950 0.55 +0.6 959,148 - Synpcc7942_0950 0.55 -1.1 959,148 - Synpcc7942_0950 0.55 +0.5 959,156 + Synpcc7942_0950 0.56 -0.1 959,156 + Synpcc7942_0950 0.56 +2.5 959,158 - Synpcc7942_0950 0.56 -1.7 959,177 + Synpcc7942_0950 0.57 +1.6 959,195 + Synpcc7942_0950 0.59 +1.6 959,219 - Synpcc7942_0950 0.61 +1.6 959,252 - Synpcc7942_0950 0.63 +1.1 959,317 - Synpcc7942_0950 0.68 -0.1 959,317 - Synpcc7942_0950 0.68 +0.5 959,365 + Synpcc7942_0950 0.72 +0.5 959,434 + Synpcc7942_0950 0.77 +3.2 959,442 - Synpcc7942_0950 0.78 +1.6 959,468 - Synpcc7942_0950 0.79 +1.1 959,468 - Synpcc7942_0950 0.79 +0.2 959,505 + Synpcc7942_0950 0.82 -0.4 959,525 + Synpcc7942_0950 0.84 -1.1 959,570 + Synpcc7942_0950 0.87 +1.6 959,645 - +0.5 959,645 - +1.7 959,645 - +1.5 959,645 - +1.5 959,661 + +2.7 959,661 - +0.5 959,661 - -1.7 959,666 + +3.4 959,692 - -1.7 959,698 + +1.5 959,724 + +2.1 959,745 + -0.3 959,745 + -0.7 959,745 + +2.1 959,745 + +0.9 959,753 - +1.7 959,753 - +2.0 959,753 - +0.3 959,753 - +2.7 959,753 - +2.2 959,753 - -1.1 959,772 + +0.6 959,782 + +2.5 959,790 - +2.9 959,790 - +0.3 959,819 + -1.1 959,847 + -1.4 959,850 - -0.8 959,921 + -0.1 959,922 + nadC Synpcc7942_0951 0.10 -1.1 959,923 - nadC Synpcc7942_0951 0.10 -1.1 959,930 - nadC Synpcc7942_0951 0.11 -0.1 960,002 + nadC Synpcc7942_0951 0.19 -1.1 960,018 + nadC Synpcc7942_0951 0.21 -1.1 960,094 + nadC Synpcc7942_0951 0.30 -0.1 960,103 + nadC Synpcc7942_0951 0.31 -0.1 960,118 + nadC Synpcc7942_0951 0.33 -1.7 960,126 - nadC Synpcc7942_0951 0.34 -2.4 960,126 - nadC Synpcc7942_0951 0.34 +0.9 960,137 + nadC Synpcc7942_0951 0.35 -1.1 960,146 - nadC Synpcc7942_0951 0.36 +0.9 960,265 + nadC Synpcc7942_0951 0.50 -0.1 960,273 - nadC Synpcc7942_0951 0.51 -2.1 960,309 + nadC Synpcc7942_0951 0.56 -1.1 960,435 + nadC Synpcc7942_0951 0.70 -2.9 960,443 - nadC Synpcc7942_0951 0.71 -1.7 960,687 + +0.3 960,687 + -0.1 960,695 - -1.1 960,695 - +0.1 960,707 - +3.5 960,707 - +1.9 960,717 - -0.1 960,727 - -0.1 960,735 + +0.6 960,735 + -2.1 960,737 + +1.1
Or see this region's nucleotide sequence