Experiment: Tetracycline 0.00125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dcd and Synpcc7942_0718 are separated by 26 nucleotides Synpcc7942_0718 and Synpcc7942_0719 overlap by 4 nucleotides Synpcc7942_0719 and Synpcc7942_0720 are separated by 219 nucleotides Synpcc7942_0720 and Synpcc7942_0721 are separated by 202 nucleotides
Synpcc7942_0717: dcd - dCTP deaminase, at 713,127 to 713,651
dcd
Synpcc7942_0718: Synpcc7942_0718 - hypothetical protein, at 713,678 to 714,331
_0718
Synpcc7942_0719: Synpcc7942_0719 - hypothetical protein, at 714,328 to 714,831
_0719
Synpcc7942_0720: Synpcc7942_0720 - hypothetical protein, at 715,051 to 715,389
_0720
Synpcc7942_0721: Synpcc7942_0721 - hypothetical protein, at 715,592 to 715,882
_0721
Position (kb) 714
715 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 713.349 kb on - strand, within dcd at 713.349 kb on - strand, within dcd at 713.349 kb on - strand, within dcd at 713.351 kb on + strand, within dcd at 713.376 kb on + strand, within dcd at 713.413 kb on + strand, within dcd at 713.413 kb on + strand, within dcd at 713.413 kb on + strand, within dcd at 713.413 kb on + strand, within dcd at 713.413 kb on + strand, within dcd at 713.431 kb on - strand, within dcd at 713.431 kb on - strand, within dcd at 713.431 kb on - strand, within dcd at 713.431 kb on - strand, within dcd at 713.437 kb on + strand, within dcd at 713.445 kb on - strand, within dcd at 713.447 kb on + strand, within dcd at 713.453 kb on - strand, within dcd at 713.456 kb on + strand, within dcd at 713.472 kb on - strand, within dcd at 713.473 kb on - strand, within dcd at 713.479 kb on + strand, within dcd at 713.489 kb on - strand, within dcd at 713.510 kb on + strand, within dcd at 713.510 kb on + strand, within dcd at 713.518 kb on - strand, within dcd at 713.518 kb on - strand, within dcd at 713.558 kb on + strand, within dcd at 713.563 kb on + strand, within dcd at 713.568 kb on + strand, within dcd at 713.572 kb on + strand, within dcd at 713.577 kb on + strand, within dcd at 713.582 kb on + strand, within dcd at 713.582 kb on + strand, within dcd at 713.582 kb on + strand, within dcd at 713.582 kb on + strand, within dcd at 713.582 kb on + strand, within dcd at 713.582 kb on + strand, within dcd at 713.590 kb on - strand, within dcd at 713.590 kb on - strand, within dcd at 713.590 kb on - strand, within dcd at 713.590 kb on - strand, within dcd at 713.719 kb on - strand at 713.720 kb on + strand at 713.754 kb on + strand, within Synpcc7942_0718 at 713.754 kb on - strand, within Synpcc7942_0718 at 713.781 kb on + strand, within Synpcc7942_0718 at 713.803 kb on + strand, within Synpcc7942_0718 at 713.822 kb on + strand, within Synpcc7942_0718 at 713.840 kb on - strand, within Synpcc7942_0718 at 713.846 kb on + strand, within Synpcc7942_0718 at 713.846 kb on + strand, within Synpcc7942_0718 at 713.847 kb on + strand, within Synpcc7942_0718 at 713.847 kb on + strand, within Synpcc7942_0718 at 713.847 kb on + strand, within Synpcc7942_0718 at 713.850 kb on - strand, within Synpcc7942_0718 at 713.851 kb on + strand, within Synpcc7942_0718 at 713.854 kb on - strand, within Synpcc7942_0718 at 713.854 kb on - strand, within Synpcc7942_0718 at 713.856 kb on + strand, within Synpcc7942_0718 at 713.886 kb on - strand, within Synpcc7942_0718 at 713.910 kb on - strand, within Synpcc7942_0718 at 713.931 kb on - strand, within Synpcc7942_0718 at 713.933 kb on - strand, within Synpcc7942_0718 at 713.943 kb on + strand, within Synpcc7942_0718 at 713.951 kb on - strand, within Synpcc7942_0718 at 713.952 kb on + strand, within Synpcc7942_0718 at 713.970 kb on + strand, within Synpcc7942_0718 at 713.978 kb on - strand, within Synpcc7942_0718 at 713.978 kb on - strand, within Synpcc7942_0718 at 713.978 kb on - strand, within Synpcc7942_0718 at 713.998 kb on - strand, within Synpcc7942_0718 at 714.013 kb on - strand, within Synpcc7942_0718 at 714.021 kb on - strand, within Synpcc7942_0718 at 714.042 kb on + strand at 714.058 kb on + strand, within Synpcc7942_0718 at 714.060 kb on - strand, within Synpcc7942_0718 at 714.070 kb on + strand, within Synpcc7942_0718 at 714.075 kb on + strand, within Synpcc7942_0718 at 714.075 kb on + strand, within Synpcc7942_0718 at 714.078 kb on - strand, within Synpcc7942_0718 at 714.080 kb on + strand, within Synpcc7942_0718 at 714.083 kb on - strand, within Synpcc7942_0718 at 714.083 kb on - strand, within Synpcc7942_0718 at 714.104 kb on - strand, within Synpcc7942_0718 at 714.104 kb on - strand, within Synpcc7942_0718 at 714.137 kb on - strand, within Synpcc7942_0718 at 714.143 kb on - strand, within Synpcc7942_0718 at 714.144 kb on + strand, within Synpcc7942_0718 at 714.145 kb on - strand, within Synpcc7942_0718 at 714.163 kb on + strand, within Synpcc7942_0718 at 714.167 kb on + strand, within Synpcc7942_0718 at 714.180 kb on - strand, within Synpcc7942_0718 at 714.182 kb on + strand, within Synpcc7942_0718 at 714.182 kb on + strand, within Synpcc7942_0718 at 714.205 kb on + strand, within Synpcc7942_0718 at 714.213 kb on - strand, within Synpcc7942_0718 at 714.213 kb on - strand, within Synpcc7942_0718 at 714.213 kb on - strand, within Synpcc7942_0718 at 714.221 kb on - strand, within Synpcc7942_0718 at 714.282 kb on - strand at 714.309 kb on + strand at 714.335 kb on - strand at 714.367 kb on - strand at 714.381 kb on - strand, within Synpcc7942_0719 at 714.391 kb on - strand, within Synpcc7942_0719 at 714.456 kb on + strand, within Synpcc7942_0719 at 714.469 kb on - strand, within Synpcc7942_0719 at 714.506 kb on - strand, within Synpcc7942_0719 at 714.516 kb on - strand, within Synpcc7942_0719 at 714.516 kb on - strand, within Synpcc7942_0719 at 714.519 kb on + strand, within Synpcc7942_0719 at 714.519 kb on + strand, within Synpcc7942_0719 at 714.529 kb on + strand, within Synpcc7942_0719 at 714.529 kb on + strand, within Synpcc7942_0719 at 714.537 kb on - strand, within Synpcc7942_0719 at 714.539 kb on - strand at 714.581 kb on - strand, within Synpcc7942_0719 at 714.671 kb on + strand, within Synpcc7942_0719 at 714.718 kb on + strand, within Synpcc7942_0719 at 714.746 kb on + strand, within Synpcc7942_0719 at 714.762 kb on + strand, within Synpcc7942_0719 at 714.763 kb on + strand, within Synpcc7942_0719 at 714.763 kb on + strand, within Synpcc7942_0719 at 714.771 kb on - strand, within Synpcc7942_0719 at 714.771 kb on - strand, within Synpcc7942_0719 at 714.773 kb on + strand, within Synpcc7942_0719 at 714.778 kb on + strand, within Synpcc7942_0719 at 714.781 kb on - strand at 714.781 kb on - strand at 714.781 kb on - strand at 714.783 kb on + strand at 714.790 kb on + strand at 714.793 kb on - strand at 714.798 kb on - strand at 714.803 kb on - strand at 714.831 kb on + strand at 714.831 kb on + strand at 714.839 kb on - strand at 714.839 kb on - strand at 714.841 kb on + strand at 714.844 kb on + strand at 714.849 kb on + strand at 714.880 kb on - strand at 714.880 kb on - strand at 714.882 kb on + strand at 714.889 kb on - strand at 714.904 kb on + strand at 714.910 kb on + strand at 714.912 kb on - strand at 714.912 kb on - strand at 714.915 kb on + strand at 714.918 kb on - strand at 714.923 kb on - strand at 714.923 kb on - strand at 714.923 kb on - strand at 714.923 kb on - strand at 714.925 kb on + strand at 714.930 kb on + strand at 714.933 kb on - strand at 714.938 kb on - strand at 714.948 kb on - strand at 714.977 kb on - strand at 714.979 kb on - strand at 714.995 kb on - strand at 715.006 kb on + strand at 715.007 kb on + strand at 715.018 kb on + strand at 715.040 kb on - strand at 715.056 kb on + strand at 715.064 kb on - strand at 715.064 kb on - strand at 715.068 kb on + strand at 715.125 kb on + strand, within Synpcc7942_0720 at 715.194 kb on + strand, within Synpcc7942_0720 at 715.196 kb on - strand at 715.202 kb on - strand, within Synpcc7942_0720 at 715.257 kb on + strand, within Synpcc7942_0720 at 715.257 kb on + strand, within Synpcc7942_0720 at 715.274 kb on + strand, within Synpcc7942_0720 at 715.284 kb on + strand, within Synpcc7942_0720 at 715.284 kb on + strand, within Synpcc7942_0720 at 715.384 kb on + strand at 715.392 kb on - strand at 715.392 kb on - strand at 715.392 kb on - strand at 715.392 kb on - strand at 715.401 kb on + strand at 715.401 kb on + strand at 715.431 kb on + strand at 715.442 kb on + strand at 715.442 kb on + strand at 715.449 kb on + strand at 715.449 kb on + strand at 715.457 kb on - strand at 715.464 kb on + strand at 715.464 kb on + strand at 715.467 kb on - strand at 715.470 kb on + strand at 715.472 kb on - strand at 715.495 kb on - strand at 715.544 kb on - strand at 715.571 kb on + strand at 715.598 kb on - strand at 715.603 kb on - strand at 715.607 kb on + strand at 715.607 kb on + strand at 715.615 kb on - strand at 715.630 kb on - strand, within Synpcc7942_0721 at 715.630 kb on - strand, within Synpcc7942_0721 at 715.630 kb on - strand, within Synpcc7942_0721 at 715.635 kb on + strand, within Synpcc7942_0721 at 715.668 kb on + strand, within Synpcc7942_0721 at 715.679 kb on - strand, within Synpcc7942_0721 at 715.681 kb on - strand, within Synpcc7942_0721 at 715.686 kb on - strand, within Synpcc7942_0721 at 715.689 kb on + strand, within Synpcc7942_0721 at 715.689 kb on + strand, within Synpcc7942_0721 at 715.723 kb on + strand, within Synpcc7942_0721 at 715.725 kb on - strand, within Synpcc7942_0721 at 715.801 kb on + strand, within Synpcc7942_0721 at 715.806 kb on + strand, within Synpcc7942_0721 at 715.806 kb on + strand, within Synpcc7942_0721 at 715.815 kb on + strand, within Synpcc7942_0721 at 715.829 kb on + strand, within Synpcc7942_0721
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.00125 mg/ml remove 713,349 - dcd Synpcc7942_0717 0.42 -1.7 713,349 - dcd Synpcc7942_0717 0.42 +1.5 713,349 - dcd Synpcc7942_0717 0.42 -0.2 713,351 + dcd Synpcc7942_0717 0.43 -0.1 713,376 + dcd Synpcc7942_0717 0.47 -0.1 713,413 + dcd Synpcc7942_0717 0.54 +1.7 713,413 + dcd Synpcc7942_0717 0.54 +1.9 713,413 + dcd Synpcc7942_0717 0.54 -0.1 713,413 + dcd Synpcc7942_0717 0.54 +0.6 713,413 + dcd Synpcc7942_0717 0.54 +1.9 713,431 - dcd Synpcc7942_0717 0.58 +0.9 713,431 - dcd Synpcc7942_0717 0.58 +1.7 713,431 - dcd Synpcc7942_0717 0.58 -0.9 713,431 - dcd Synpcc7942_0717 0.58 +0.9 713,437 + dcd Synpcc7942_0717 0.59 +2.5 713,445 - dcd Synpcc7942_0717 0.61 -0.1 713,447 + dcd Synpcc7942_0717 0.61 +1.5 713,453 - dcd Synpcc7942_0717 0.62 +0.4 713,456 + dcd Synpcc7942_0717 0.63 +0.4 713,472 - dcd Synpcc7942_0717 0.66 +0.8 713,473 - dcd Synpcc7942_0717 0.66 -0.1 713,479 + dcd Synpcc7942_0717 0.67 +2.5 713,489 - dcd Synpcc7942_0717 0.69 -0.7 713,510 + dcd Synpcc7942_0717 0.73 -0.7 713,510 + dcd Synpcc7942_0717 0.73 +1.7 713,518 - dcd Synpcc7942_0717 0.74 -1.1 713,518 - dcd Synpcc7942_0717 0.74 +1.1 713,558 + dcd Synpcc7942_0717 0.82 -0.1 713,563 + dcd Synpcc7942_0717 0.83 +1.7 713,568 + dcd Synpcc7942_0717 0.84 +3.0 713,572 + dcd Synpcc7942_0717 0.85 +0.9 713,577 + dcd Synpcc7942_0717 0.86 +0.9 713,582 + dcd Synpcc7942_0717 0.87 +3.1 713,582 + dcd Synpcc7942_0717 0.87 -0.4 713,582 + dcd Synpcc7942_0717 0.87 +2.1 713,582 + dcd Synpcc7942_0717 0.87 +1.7 713,582 + dcd Synpcc7942_0717 0.87 -0.1 713,582 + dcd Synpcc7942_0717 0.87 +1.1 713,590 - dcd Synpcc7942_0717 0.88 +0.5 713,590 - dcd Synpcc7942_0717 0.88 -0.1 713,590 - dcd Synpcc7942_0717 0.88 +0.9 713,590 - dcd Synpcc7942_0717 0.88 -0.0 713,719 - +0.5 713,720 + +1.5 713,754 + Synpcc7942_0718 0.12 +0.9 713,754 - Synpcc7942_0718 0.12 +1.7 713,781 + Synpcc7942_0718 0.16 -0.1 713,803 + Synpcc7942_0718 0.19 +0.9 713,822 + Synpcc7942_0718 0.22 -0.1 713,840 - Synpcc7942_0718 0.25 +1.5 713,846 + Synpcc7942_0718 0.26 +1.2 713,846 + Synpcc7942_0718 0.26 +0.9 713,847 + Synpcc7942_0718 0.26 +1.5 713,847 + Synpcc7942_0718 0.26 -0.1 713,847 + Synpcc7942_0718 0.26 +0.9 713,850 - Synpcc7942_0718 0.26 +2.4 713,851 + Synpcc7942_0718 0.26 +0.9 713,854 - Synpcc7942_0718 0.27 +2.1 713,854 - Synpcc7942_0718 0.27 -0.1 713,856 + Synpcc7942_0718 0.27 +0.4 713,886 - Synpcc7942_0718 0.32 -1.7 713,910 - Synpcc7942_0718 0.35 -2.1 713,931 - Synpcc7942_0718 0.39 +0.6 713,933 - Synpcc7942_0718 0.39 -0.8 713,943 + Synpcc7942_0718 0.41 +0.9 713,951 - Synpcc7942_0718 0.42 +2.7 713,952 + Synpcc7942_0718 0.42 -1.3 713,970 + Synpcc7942_0718 0.45 +1.4 713,978 - Synpcc7942_0718 0.46 +1.4 713,978 - Synpcc7942_0718 0.46 +0.9 713,978 - Synpcc7942_0718 0.46 +0.8 713,998 - Synpcc7942_0718 0.49 -1.1 714,013 - Synpcc7942_0718 0.51 +0.0 714,021 - Synpcc7942_0718 0.52 -0.1 714,042 + +2.2 714,058 + Synpcc7942_0718 0.58 +1.3 714,060 - Synpcc7942_0718 0.58 -0.7 714,070 + Synpcc7942_0718 0.60 +2.2 714,075 + Synpcc7942_0718 0.61 +2.7 714,075 + Synpcc7942_0718 0.61 +0.9 714,078 - Synpcc7942_0718 0.61 +1.1 714,080 + Synpcc7942_0718 0.61 +0.9 714,083 - Synpcc7942_0718 0.62 +0.0 714,083 - Synpcc7942_0718 0.62 +1.5 714,104 - Synpcc7942_0718 0.65 +0.9 714,104 - Synpcc7942_0718 0.65 -1.1 714,137 - Synpcc7942_0718 0.70 +0.7 714,143 - Synpcc7942_0718 0.71 -0.1 714,144 + Synpcc7942_0718 0.71 +0.2 714,145 - Synpcc7942_0718 0.71 -0.7 714,163 + Synpcc7942_0718 0.74 -0.4 714,167 + Synpcc7942_0718 0.75 +2.1 714,180 - Synpcc7942_0718 0.77 -1.1 714,182 + Synpcc7942_0718 0.77 +0.6 714,182 + Synpcc7942_0718 0.77 +0.9 714,205 + Synpcc7942_0718 0.81 -0.1 714,213 - Synpcc7942_0718 0.82 -0.1 714,213 - Synpcc7942_0718 0.82 +0.3 714,213 - Synpcc7942_0718 0.82 -0.1 714,221 - Synpcc7942_0718 0.83 +1.5 714,282 - +1.2 714,309 + -0.7 714,335 - +0.4 714,367 - +0.3 714,381 - Synpcc7942_0719 0.11 +0.7 714,391 - Synpcc7942_0719 0.12 +1.6 714,456 + Synpcc7942_0719 0.25 +0.6 714,469 - Synpcc7942_0719 0.28 +3.6 714,506 - Synpcc7942_0719 0.35 +1.5 714,516 - Synpcc7942_0719 0.37 +0.9 714,516 - Synpcc7942_0719 0.37 +1.4 714,519 + Synpcc7942_0719 0.38 +1.7 714,519 + Synpcc7942_0719 0.38 +2.1 714,529 + Synpcc7942_0719 0.40 -2.1 714,529 + Synpcc7942_0719 0.40 +1.0 714,537 - Synpcc7942_0719 0.41 -0.9 714,539 - -1.1 714,581 - Synpcc7942_0719 0.50 +0.8 714,671 + Synpcc7942_0719 0.68 +3.2 714,718 + Synpcc7942_0719 0.77 -2.1 714,746 + Synpcc7942_0719 0.83 -0.1 714,762 + Synpcc7942_0719 0.86 +0.5 714,763 + Synpcc7942_0719 0.86 +0.7 714,763 + Synpcc7942_0719 0.86 -0.7 714,771 - Synpcc7942_0719 0.88 +2.2 714,771 - Synpcc7942_0719 0.88 +1.4 714,773 + Synpcc7942_0719 0.88 +2.5 714,778 + Synpcc7942_0719 0.89 +1.3 714,781 - +0.6 714,781 - +1.3 714,781 - -0.1 714,783 + +1.6 714,790 + +1.2 714,793 - +2.2 714,798 - +0.5 714,803 - -0.7 714,831 + -0.1 714,831 + -1.7 714,839 - -0.8 714,839 - +2.5 714,841 + -0.1 714,844 + +1.6 714,849 + -0.7 714,880 - -0.1 714,880 - -0.1 714,882 + +1.5 714,889 - +1.7 714,904 + -0.1 714,910 + -1.7 714,912 - -0.7 714,912 - +1.5 714,915 + -2.4 714,918 - +1.5 714,923 - -0.1 714,923 - -0.1 714,923 - -1.7 714,923 - -0.1 714,925 + +0.6 714,930 + +0.5 714,933 - -0.1 714,938 - +0.9 714,948 - -1.1 714,977 - -0.1 714,979 - +1.6 714,995 - +1.5 715,006 + +1.8 715,007 + -1.1 715,018 + +2.7 715,040 - +0.5 715,056 + +1.5 715,064 - +1.0 715,064 - +0.5 715,068 + +0.9 715,125 + Synpcc7942_0720 0.22 +1.1 715,194 + Synpcc7942_0720 0.42 -1.1 715,196 - +1.5 715,202 - Synpcc7942_0720 0.45 -2.1 715,257 + Synpcc7942_0720 0.61 +1.5 715,257 + Synpcc7942_0720 0.61 -0.5 715,274 + Synpcc7942_0720 0.66 -0.1 715,284 + Synpcc7942_0720 0.69 +0.9 715,284 + Synpcc7942_0720 0.69 +0.6 715,384 + +1.2 715,392 - +1.9 715,392 - -0.1 715,392 - -1.0 715,392 - -0.1 715,401 + +0.9 715,401 + +2.0 715,431 + +1.9 715,442 + +0.3 715,442 + -0.1 715,449 + +1.5 715,449 + +1.1 715,457 - -1.1 715,464 + +0.8 715,464 + +1.1 715,467 - +2.5 715,470 + -0.8 715,472 - -0.1 715,495 - +3.1 715,544 - +0.9 715,571 + -0.5 715,598 - +0.9 715,603 - +1.5 715,607 + +1.9 715,607 + -0.1 715,615 - +1.5 715,630 - Synpcc7942_0721 0.13 +0.3 715,630 - Synpcc7942_0721 0.13 +2.7 715,630 - Synpcc7942_0721 0.13 +2.5 715,635 + Synpcc7942_0721 0.15 +1.2 715,668 + Synpcc7942_0721 0.26 +0.9 715,679 - Synpcc7942_0721 0.30 -0.1 715,681 - Synpcc7942_0721 0.31 +2.5 715,686 - Synpcc7942_0721 0.32 -1.1 715,689 + Synpcc7942_0721 0.33 -0.1 715,689 + Synpcc7942_0721 0.33 +0.8 715,723 + Synpcc7942_0721 0.45 +0.3 715,725 - Synpcc7942_0721 0.46 -0.1 715,801 + Synpcc7942_0721 0.72 -0.7 715,806 + Synpcc7942_0721 0.74 +0.8 715,806 + Synpcc7942_0721 0.74 -1.1 715,815 + Synpcc7942_0721 0.77 +0.5 715,829 + Synpcc7942_0721 0.81 +1.6
Or see this region's nucleotide sequence