Experiment: Tetracycline 0.00125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rps1 and Synpcc7942_0695 are separated by 277 nucleotides Synpcc7942_0695 and psbT are separated by 209 nucleotides psbT and psbB are separated by 76 nucleotides
Synpcc7942_0694: rps1 - 30S ribosomal protein S1, at 687,133 to 688,056
rps1
Synpcc7942_0695: Synpcc7942_0695 - hypothetical protein, at 688,334 to 688,840
_0695
Synpcc7942_0696: psbT - photosystem II reaction center protein T, at 689,050 to 689,145
psbT
Synpcc7942_0697: psbB - photosystem II core light harvesting protein, at 689,222 to 690,748
psbB
Position (kb) 688
689 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 688.236 kb on + strand at 688.365 kb on + strand at 688.386 kb on + strand, within Synpcc7942_0695 at 688.434 kb on + strand, within Synpcc7942_0695 at 688.442 kb on - strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand at 688.552 kb on + strand, within Synpcc7942_0695 at 688.558 kb on - strand, within Synpcc7942_0695 at 688.560 kb on - strand, within Synpcc7942_0695 at 688.560 kb on - strand, within Synpcc7942_0695 at 688.560 kb on - strand, within Synpcc7942_0695 at 688.560 kb on - strand, within Synpcc7942_0695 at 688.560 kb on - strand, within Synpcc7942_0695 at 688.560 kb on - strand, within Synpcc7942_0695 at 688.560 kb on - strand, within Synpcc7942_0695 at 688.560 kb on - strand, within Synpcc7942_0695 at 688.560 kb on - strand, within Synpcc7942_0695 at 688.571 kb on - strand, within Synpcc7942_0695 at 688.622 kb on + strand, within Synpcc7942_0695 at 688.627 kb on + strand, within Synpcc7942_0695 at 688.692 kb on - strand, within Synpcc7942_0695 at 688.722 kb on + strand, within Synpcc7942_0695 at 688.759 kb on - strand, within Synpcc7942_0695 at 688.760 kb on + strand, within Synpcc7942_0695 at 688.787 kb on - strand, within Synpcc7942_0695 at 688.788 kb on - strand, within Synpcc7942_0695 at 688.825 kb on + strand at 688.871 kb on + strand at 689.018 kb on - strand at 689.021 kb on + strand at 689.021 kb on + strand at 689.028 kb on + strand at 689.029 kb on - strand at 689.095 kb on + strand, within psbT
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.00125 mg/ml remove 688,236 + -0.1 688,365 + -0.3 688,386 + Synpcc7942_0695 0.10 -2.4 688,434 + Synpcc7942_0695 0.20 -1.7 688,442 - Synpcc7942_0695 0.21 -1.1 688,552 + Synpcc7942_0695 0.43 -2.9 688,552 + Synpcc7942_0695 0.43 -1.1 688,552 + Synpcc7942_0695 0.43 +1.9 688,552 + Synpcc7942_0695 0.43 -0.8 688,552 + Synpcc7942_0695 0.43 -1.1 688,552 + Synpcc7942_0695 0.43 -4.6 688,552 + Synpcc7942_0695 0.43 -2.1 688,552 + Synpcc7942_0695 0.43 -3.3 688,552 + Synpcc7942_0695 0.43 -1.1 688,552 + Synpcc7942_0695 0.43 -1.8 688,552 + -0.1 688,552 + Synpcc7942_0695 0.43 -0.8 688,558 - Synpcc7942_0695 0.44 -0.7 688,560 - Synpcc7942_0695 0.45 -1.7 688,560 - Synpcc7942_0695 0.45 +0.9 688,560 - Synpcc7942_0695 0.45 -4.0 688,560 - Synpcc7942_0695 0.45 +1.9 688,560 - Synpcc7942_0695 0.45 -2.8 688,560 - Synpcc7942_0695 0.45 -1.1 688,560 - Synpcc7942_0695 0.45 -2.4 688,560 - Synpcc7942_0695 0.45 -2.1 688,560 - Synpcc7942_0695 0.45 -2.1 688,571 - Synpcc7942_0695 0.47 -1.7 688,622 + Synpcc7942_0695 0.57 -0.1 688,627 + Synpcc7942_0695 0.58 -0.8 688,692 - Synpcc7942_0695 0.71 -0.1 688,722 + Synpcc7942_0695 0.77 -1.7 688,759 - Synpcc7942_0695 0.84 -2.4 688,760 + Synpcc7942_0695 0.84 -2.4 688,787 - Synpcc7942_0695 0.89 -1.1 688,788 - Synpcc7942_0695 0.90 -0.1 688,825 + -1.7 688,871 + -0.1 689,018 - +2.9 689,021 + -2.1 689,021 + -1.7 689,028 + -0.1 689,029 - -0.7 689,095 + psbT Synpcc7942_0696 0.47 -1.7
Or see this region's nucleotide sequence