Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0460

Experiment: Tetracycline 0.00125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0459 and Synpcc7942_0460 are separated by 139 nucleotidesSynpcc7942_0460 and Synpcc7942_0461 are separated by 96 nucleotidesSynpcc7942_0461 and Synpcc7942_0462 are separated by 56 nucleotides Synpcc7942_0459: Synpcc7942_0459 - glutathione-dependent formaldehyde dehydrogenase, at 447,057 to 448,166 _0459 Synpcc7942_0460: Synpcc7942_0460 - putative acetyltransferase, at 448,306 to 448,779 _0460 Synpcc7942_0461: Synpcc7942_0461 - hypothetical protein, at 448,876 to 449,313 _0461 Synpcc7942_0462: Synpcc7942_0462 - hypothetical protein, at 449,370 to 449,957 _0462 Position (kb) 448 449Strain fitness (log2 ratio) -2 -1 0 1 2 3at 447.327 kb on + strand, within Synpcc7942_0459at 447.329 kb on - strand, within Synpcc7942_0459at 447.342 kb on + strand, within Synpcc7942_0459at 447.388 kb on - strand, within Synpcc7942_0459at 447.413 kb on + strand, within Synpcc7942_0459at 447.450 kb on - strand, within Synpcc7942_0459at 447.474 kb on + strand, within Synpcc7942_0459at 447.475 kb on + strand, within Synpcc7942_0459at 447.560 kb on - strand, within Synpcc7942_0459at 447.577 kb on - strand, within Synpcc7942_0459at 447.579 kb on + strand, within Synpcc7942_0459at 447.579 kb on + strand, within Synpcc7942_0459at 447.579 kb on + strand, within Synpcc7942_0459at 447.587 kb on - strandat 447.587 kb on - strand, within Synpcc7942_0459at 447.627 kb on + strand, within Synpcc7942_0459at 447.627 kb on + strand, within Synpcc7942_0459at 447.627 kb on + strand, within Synpcc7942_0459at 447.627 kb on + strand, within Synpcc7942_0459at 447.627 kb on + strand, within Synpcc7942_0459at 447.635 kb on - strand, within Synpcc7942_0459at 447.676 kb on + strand, within Synpcc7942_0459at 447.677 kb on + strand, within Synpcc7942_0459at 447.678 kb on - strand, within Synpcc7942_0459at 447.683 kb on - strand, within Synpcc7942_0459at 447.684 kb on - strand, within Synpcc7942_0459at 447.689 kb on - strand, within Synpcc7942_0459at 447.732 kb on + strand, within Synpcc7942_0459at 447.733 kb on + strand, within Synpcc7942_0459at 447.747 kb on + strand, within Synpcc7942_0459at 447.765 kb on + strand, within Synpcc7942_0459at 447.773 kb on - strand, within Synpcc7942_0459at 447.788 kb on + strand, within Synpcc7942_0459at 447.796 kb on - strand, within Synpcc7942_0459at 447.813 kb on + strand, within Synpcc7942_0459at 447.825 kb on + strand, within Synpcc7942_0459at 447.825 kb on + strand, within Synpcc7942_0459at 447.825 kb on + strand, within Synpcc7942_0459at 447.825 kb on + strand, within Synpcc7942_0459at 447.825 kb on + strand, within Synpcc7942_0459at 447.825 kb on + strand, within Synpcc7942_0459at 447.825 kb on + strand, within Synpcc7942_0459at 447.833 kb on - strand, within Synpcc7942_0459at 447.833 kb on - strand, within Synpcc7942_0459at 447.833 kb on - strand, within Synpcc7942_0459at 447.833 kb on - strand, within Synpcc7942_0459at 447.833 kb on - strand, within Synpcc7942_0459at 447.833 kb on - strand, within Synpcc7942_0459at 447.854 kb on + strand, within Synpcc7942_0459at 447.861 kb on - strand, within Synpcc7942_0459at 447.868 kb on + strand, within Synpcc7942_0459at 447.893 kb on + strand, within Synpcc7942_0459at 447.911 kb on + strand, within Synpcc7942_0459at 447.939 kb on + strand, within Synpcc7942_0459at 447.939 kb on + strand, within Synpcc7942_0459at 447.940 kb on + strand, within Synpcc7942_0459at 447.963 kb on + strand, within Synpcc7942_0459at 447.992 kb on - strand, within Synpcc7942_0459at 448.028 kb on + strand, within Synpcc7942_0459at 448.036 kb on - strand, within Synpcc7942_0459at 448.036 kb on - strand, within Synpcc7942_0459at 448.042 kb on + strand, within Synpcc7942_0459at 448.050 kb on - strand, within Synpcc7942_0459at 448.094 kb on - strandat 448.094 kb on - strandat 448.138 kb on + strandat 448.146 kb on - strandat 448.177 kb on - strandat 448.196 kb on + strandat 448.245 kb on + strandat 448.251 kb on + strandat 448.251 kb on + strandat 448.275 kb on - strandat 448.275 kb on - strandat 448.296 kb on - strandat 448.309 kb on + strandat 448.329 kb on + strandat 448.329 kb on + strandat 448.329 kb on + strandat 448.341 kb on + strandat 448.341 kb on + strandat 448.346 kb on + strandat 448.346 kb on + strandat 448.346 kb on + strandat 448.354 kb on - strand, within Synpcc7942_0460at 448.414 kb on + strand, within Synpcc7942_0460at 448.418 kb on + strand, within Synpcc7942_0460at 448.436 kb on - strand, within Synpcc7942_0460at 448.436 kb on - strand, within Synpcc7942_0460at 448.443 kb on - strand, within Synpcc7942_0460at 448.449 kb on - strand, within Synpcc7942_0460at 448.483 kb on - strand, within Synpcc7942_0460at 448.510 kb on + strand, within Synpcc7942_0460at 448.511 kb on + strand, within Synpcc7942_0460at 448.529 kb on - strand, within Synpcc7942_0460at 448.552 kb on - strand, within Synpcc7942_0460at 448.610 kb on - strand, within Synpcc7942_0460at 448.669 kb on + strand, within Synpcc7942_0460at 448.701 kb on + strand, within Synpcc7942_0460at 448.712 kb on + strand, within Synpcc7942_0460at 448.772 kb on - strandat 448.779 kb on - strandat 448.818 kb on - strandat 448.841 kb on - strandat 448.847 kb on + strandat 448.849 kb on + strandat 448.849 kb on + strandat 448.895 kb on + strandat 448.895 kb on + strandat 448.896 kb on + strandat 448.896 kb on + strandat 448.953 kb on - strand, within Synpcc7942_0461at 448.953 kb on - strand, within Synpcc7942_0461at 448.953 kb on - strand, within Synpcc7942_0461at 448.965 kb on - strand, within Synpcc7942_0461at 449.131 kb on + strand, within Synpcc7942_0461at 449.139 kb on - strand, within Synpcc7942_0461at 449.139 kb on - strand, within Synpcc7942_0461at 449.139 kb on - strand, within Synpcc7942_0461at 449.141 kb on + strand, within Synpcc7942_0461at 449.176 kb on + strand, within Synpcc7942_0461at 449.192 kb on + strand, within Synpcc7942_0461at 449.192 kb on + strand, within Synpcc7942_0461at 449.195 kb on - strand, within Synpcc7942_0461at 449.200 kb on - strand, within Synpcc7942_0461at 449.200 kb on - strand, within Synpcc7942_0461at 449.200 kb on - strand, within Synpcc7942_0461at 449.200 kb on - strand, within Synpcc7942_0461at 449.200 kb on - strand, within Synpcc7942_0461at 449.200 kb on - strand, within Synpcc7942_0461at 449.200 kb on - strand, within Synpcc7942_0461at 449.200 kb on - strand, within Synpcc7942_0461at 449.225 kb on - strand, within Synpcc7942_0461at 449.248 kb on + strand, within Synpcc7942_0461at 449.250 kb on + strand, within Synpcc7942_0461at 449.272 kb on + strandat 449.288 kb on + strandat 449.288 kb on + strandat 449.296 kb on - strandat 449.310 kb on + strandat 449.337 kb on + strandat 449.345 kb on - strandat 449.361 kb on + strandat 449.361 kb on - strandat 449.472 kb on + strand, within Synpcc7942_0462at 449.480 kb on - strand, within Synpcc7942_0462at 449.481 kb on + strand, within Synpcc7942_0462at 449.499 kb on - strand, within Synpcc7942_0462at 449.509 kb on + strand, within Synpcc7942_0462at 449.509 kb on + strand, within Synpcc7942_0462at 449.517 kb on - strand, within Synpcc7942_0462at 449.519 kb on + strand, within Synpcc7942_0462at 449.532 kb on - strand, within Synpcc7942_0462at 449.534 kb on - strand, within Synpcc7942_0462at 449.602 kb on + strand, within Synpcc7942_0462at 449.602 kb on + strand, within Synpcc7942_0462at 449.602 kb on + strand, within Synpcc7942_0462at 449.610 kb on - strand, within Synpcc7942_0462at 449.610 kb on - strand, within Synpcc7942_0462at 449.617 kb on + strand, within Synpcc7942_0462at 449.637 kb on + strand, within Synpcc7942_0462at 449.637 kb on + strand, within Synpcc7942_0462at 449.637 kb on + strand, within Synpcc7942_0462at 449.637 kb on + strand, within Synpcc7942_0462at 449.645 kb on - strand, within Synpcc7942_0462at 449.645 kb on - strand, within Synpcc7942_0462at 449.652 kb on + strand, within Synpcc7942_0462at 449.664 kb on + strand, within Synpcc7942_0462at 449.671 kb on + strand, within Synpcc7942_0462at 449.672 kb on - strand, within Synpcc7942_0462at 449.672 kb on - strand, within Synpcc7942_0462at 449.683 kb on + strand, within Synpcc7942_0462at 449.685 kb on + strand, within Synpcc7942_0462at 449.731 kb on - strand, within Synpcc7942_0462at 449.736 kb on + strand, within Synpcc7942_0462

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.00125 mg/ml
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447,327 + Synpcc7942_0459 0.24 -1.0
447,329 - Synpcc7942_0459 0.25 -1.0
447,342 + Synpcc7942_0459 0.26 -1.6
447,388 - Synpcc7942_0459 0.30 -2.6
447,413 + Synpcc7942_0459 0.32 -1.6
447,450 - Synpcc7942_0459 0.35 -2.3
447,474 + Synpcc7942_0459 0.38 -2.6
447,475 + Synpcc7942_0459 0.38 +0.6
447,560 - Synpcc7942_0459 0.45 +0.6
447,577 - Synpcc7942_0459 0.47 +2.3
447,579 + Synpcc7942_0459 0.47 -1.0
447,579 + Synpcc7942_0459 0.47 -1.6
447,579 + Synpcc7942_0459 0.47 -0.9
447,587 - -1.0
447,587 - Synpcc7942_0459 0.48 -1.6
447,627 + Synpcc7942_0459 0.51 -1.6
447,627 + Synpcc7942_0459 0.51 -0.2
447,627 + Synpcc7942_0459 0.51 -2.0
447,627 + Synpcc7942_0459 0.51 -0.0
447,627 + Synpcc7942_0459 0.51 -0.4
447,635 - Synpcc7942_0459 0.52 -1.6
447,676 + Synpcc7942_0459 0.56 +1.6
447,677 + Synpcc7942_0459 0.56 -1.2
447,678 - Synpcc7942_0459 0.56 -0.0
447,683 - Synpcc7942_0459 0.56 +3.3
447,684 - Synpcc7942_0459 0.56 -0.0
447,689 - Synpcc7942_0459 0.57 +1.6
447,732 + Synpcc7942_0459 0.61 -1.4
447,733 + Synpcc7942_0459 0.61 -0.4
447,747 + Synpcc7942_0459 0.62 -0.2
447,765 + Synpcc7942_0459 0.64 +0.5
447,773 - Synpcc7942_0459 0.65 -0.0
447,788 + Synpcc7942_0459 0.66 -1.3
447,796 - Synpcc7942_0459 0.67 -0.0
447,813 + Synpcc7942_0459 0.68 -1.0
447,825 + Synpcc7942_0459 0.69 -1.6
447,825 + Synpcc7942_0459 0.69 -0.6
447,825 + Synpcc7942_0459 0.69 -1.6
447,825 + Synpcc7942_0459 0.69 -0.0
447,825 + Synpcc7942_0459 0.69 -0.0
447,825 + Synpcc7942_0459 0.69 -2.0
447,825 + Synpcc7942_0459 0.69 -0.0
447,833 - Synpcc7942_0459 0.70 -0.7
447,833 - Synpcc7942_0459 0.70 -0.0
447,833 - Synpcc7942_0459 0.70 -1.0
447,833 - Synpcc7942_0459 0.70 +1.2
447,833 - Synpcc7942_0459 0.70 -0.3
447,833 - Synpcc7942_0459 0.70 -0.0
447,854 + Synpcc7942_0459 0.72 -0.0
447,861 - Synpcc7942_0459 0.72 -0.0
447,868 + Synpcc7942_0459 0.73 +1.0
447,893 + Synpcc7942_0459 0.75 +0.7
447,911 + Synpcc7942_0459 0.77 -0.0
447,939 + Synpcc7942_0459 0.79 -0.0
447,939 + Synpcc7942_0459 0.79 +0.6
447,940 + Synpcc7942_0459 0.80 -1.6
447,963 + Synpcc7942_0459 0.82 -0.0
447,992 - Synpcc7942_0459 0.84 -0.0
448,028 + Synpcc7942_0459 0.87 -1.0
448,036 - Synpcc7942_0459 0.88 -0.0
448,036 - Synpcc7942_0459 0.88 -1.0
448,042 + Synpcc7942_0459 0.89 +0.3
448,050 - Synpcc7942_0459 0.89 -1.6
448,094 - +0.6
448,094 - -0.0
448,138 + +0.7
448,146 - -0.0
448,177 - -0.0
448,196 + -1.3
448,245 + -1.6
448,251 + -0.6
448,251 + +1.0
448,275 - +0.6
448,275 - +2.0
448,296 - -0.6
448,309 + -1.0
448,329 + -2.0
448,329 + -0.6
448,329 + -1.0
448,341 + -0.0
448,341 + +0.4
448,346 + -0.0
448,346 + +1.2
448,346 + -0.6
448,354 - Synpcc7942_0460 0.10 -0.0
448,414 + Synpcc7942_0460 0.23 -0.7
448,418 + Synpcc7942_0460 0.24 +1.0
448,436 - Synpcc7942_0460 0.27 +1.4
448,436 - Synpcc7942_0460 0.27 +0.8
448,443 - Synpcc7942_0460 0.29 +3.7
448,449 - Synpcc7942_0460 0.30 +2.0
448,483 - Synpcc7942_0460 0.37 +0.8
448,510 + Synpcc7942_0460 0.43 +1.0
448,511 + Synpcc7942_0460 0.43 +1.0
448,529 - Synpcc7942_0460 0.47 +0.6
448,552 - Synpcc7942_0460 0.52 +1.4
448,610 - Synpcc7942_0460 0.64 +0.3
448,669 + Synpcc7942_0460 0.77 -1.0
448,701 + Synpcc7942_0460 0.83 +1.4
448,712 + Synpcc7942_0460 0.86 -1.2
448,772 - +1.3
448,779 - +1.3
448,818 - +1.6
448,841 - -0.3
448,847 + +0.6
448,849 + +1.0
448,849 + -0.0
448,895 + +0.3
448,895 + +1.0
448,896 + -1.3
448,896 + +0.3
448,953 - Synpcc7942_0461 0.18 +0.7
448,953 - Synpcc7942_0461 0.18 +1.3
448,953 - Synpcc7942_0461 0.18 +1.4
448,965 - Synpcc7942_0461 0.20 +1.7
449,131 + Synpcc7942_0461 0.58 -1.6
449,139 - Synpcc7942_0461 0.60 +0.6
449,139 - Synpcc7942_0461 0.60 -1.0
449,139 - Synpcc7942_0461 0.60 +0.3
449,141 + Synpcc7942_0461 0.61 +1.7
449,176 + Synpcc7942_0461 0.68 +1.0
449,192 + Synpcc7942_0461 0.72 -0.7
449,192 + Synpcc7942_0461 0.72 -0.0
449,195 - Synpcc7942_0461 0.73 +0.9
449,200 - Synpcc7942_0461 0.74 +1.6
449,200 - Synpcc7942_0461 0.74 +2.0
449,200 - Synpcc7942_0461 0.74 +2.3
449,200 - Synpcc7942_0461 0.74 -0.7
449,200 - Synpcc7942_0461 0.74 -1.0
449,200 - Synpcc7942_0461 0.74 +2.8
449,200 - Synpcc7942_0461 0.74 -0.0
449,200 - Synpcc7942_0461 0.74 +1.0
449,225 - Synpcc7942_0461 0.80 +1.6
449,248 + Synpcc7942_0461 0.85 -1.6
449,250 + Synpcc7942_0461 0.85 +0.6
449,272 + +0.7
449,288 + -0.5
449,288 + -1.0
449,296 - +1.0
449,310 + -0.0
449,337 + +0.4
449,345 - -0.0
449,361 + -1.6
449,361 - +0.6
449,472 + Synpcc7942_0462 0.17 +2.7
449,480 - Synpcc7942_0462 0.19 +1.0
449,481 + Synpcc7942_0462 0.19 +1.0
449,499 - Synpcc7942_0462 0.22 +0.8
449,509 + Synpcc7942_0462 0.24 +1.3
449,509 + Synpcc7942_0462 0.24 -0.0
449,517 - Synpcc7942_0462 0.25 +2.3
449,519 + Synpcc7942_0462 0.25 +2.5
449,532 - Synpcc7942_0462 0.28 +2.0
449,534 - Synpcc7942_0462 0.28 +0.6
449,602 + Synpcc7942_0462 0.39 +1.6
449,602 + Synpcc7942_0462 0.39 -2.0
449,602 + Synpcc7942_0462 0.39 -1.0
449,610 - Synpcc7942_0462 0.41 -0.4
449,610 - Synpcc7942_0462 0.41 -1.0
449,617 + Synpcc7942_0462 0.42 -0.6
449,637 + Synpcc7942_0462 0.45 -1.0
449,637 + Synpcc7942_0462 0.45 -0.4
449,637 + Synpcc7942_0462 0.45 +2.0
449,637 + Synpcc7942_0462 0.45 +2.1
449,645 - Synpcc7942_0462 0.47 +2.1
449,645 - Synpcc7942_0462 0.47 +0.1
449,652 + Synpcc7942_0462 0.48 -1.0
449,664 + Synpcc7942_0462 0.50 -2.0
449,671 + Synpcc7942_0462 0.51 +2.5
449,672 - Synpcc7942_0462 0.51 +2.3
449,672 - Synpcc7942_0462 0.51 -0.9
449,683 + Synpcc7942_0462 0.53 +2.3
449,685 + Synpcc7942_0462 0.54 -1.0
449,731 - Synpcc7942_0462 0.61 +1.4
449,736 + Synpcc7942_0462 0.62 +1.0

Or see this region's nucleotide sequence