Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0340

Experiment: Tetracycline 0.00125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0339 and Synpcc7942_0340 overlap by 4 nucleotidesSynpcc7942_0340 and Synpcc7942_0341 overlap by 20 nucleotidesSynpcc7942_0341 and Synpcc7942_0342 are separated by 157 nucleotides Synpcc7942_0339: Synpcc7942_0339 - hypothetical protein, at 333,995 to 335,074 _0339 Synpcc7942_0340: Synpcc7942_0340 - hypothetical protein, at 335,071 to 335,652 _0340 Synpcc7942_0341: Synpcc7942_0341 - hypothetical protein, at 335,633 to 336,205 _0341 Synpcc7942_0342: Synpcc7942_0342 - hypothetical protein, at 336,363 to 336,590 _0342 Position (kb) 335 336Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 334.105 kb on - strand, within Synpcc7942_0339at 334.153 kb on + strand, within Synpcc7942_0339at 334.375 kb on + strand, within Synpcc7942_0339at 334.429 kb on + strand, within Synpcc7942_0339at 334.468 kb on + strand, within Synpcc7942_0339at 334.547 kb on + strand, within Synpcc7942_0339at 334.758 kb on + strand, within Synpcc7942_0339at 334.765 kb on + strand, within Synpcc7942_0339at 334.790 kb on + strand, within Synpcc7942_0339at 334.821 kb on - strand, within Synpcc7942_0339at 334.856 kb on + strand, within Synpcc7942_0339at 334.891 kb on - strand, within Synpcc7942_0339at 334.954 kb on + strand, within Synpcc7942_0339at 334.971 kb on + strandat 335.037 kb on + strandat 335.046 kb on + strandat 335.103 kb on - strandat 335.127 kb on + strandat 335.127 kb on + strandat 335.138 kb on - strand, within Synpcc7942_0340at 335.196 kb on + strand, within Synpcc7942_0340at 335.223 kb on - strand, within Synpcc7942_0340at 335.242 kb on + strand, within Synpcc7942_0340at 335.249 kb on + strand, within Synpcc7942_0340at 335.249 kb on + strand, within Synpcc7942_0340at 335.255 kb on - strand, within Synpcc7942_0340at 335.262 kb on - strandat 335.273 kb on + strand, within Synpcc7942_0340at 335.281 kb on - strand, within Synpcc7942_0340at 335.304 kb on - strand, within Synpcc7942_0340at 335.334 kb on + strand, within Synpcc7942_0340at 335.348 kb on - strand, within Synpcc7942_0340at 335.355 kb on + strand, within Synpcc7942_0340at 335.363 kb on - strand, within Synpcc7942_0340at 335.365 kb on + strand, within Synpcc7942_0340at 335.389 kb on + strand, within Synpcc7942_0340at 335.392 kb on - strand, within Synpcc7942_0340at 335.392 kb on - strand, within Synpcc7942_0340at 335.425 kb on + strand, within Synpcc7942_0340at 335.426 kb on - strand, within Synpcc7942_0340at 335.433 kb on - strand, within Synpcc7942_0340at 335.501 kb on + strand, within Synpcc7942_0340at 335.501 kb on + strand, within Synpcc7942_0340at 335.502 kb on - strand, within Synpcc7942_0340at 335.507 kb on - strand, within Synpcc7942_0340at 335.509 kb on - strand, within Synpcc7942_0340at 335.602 kb on - strandat 335.602 kb on - strandat 335.602 kb on - strandat 335.626 kb on - strandat 335.660 kb on + strandat 335.770 kb on - strand, within Synpcc7942_0341at 335.809 kb on + strand, within Synpcc7942_0341at 335.928 kb on + strand, within Synpcc7942_0341at 335.937 kb on - strand, within Synpcc7942_0341at 335.961 kb on + strand, within Synpcc7942_0341at 335.969 kb on - strand, within Synpcc7942_0341at 335.980 kb on + strand, within Synpcc7942_0341at 335.980 kb on + strand, within Synpcc7942_0341at 335.988 kb on - strand, within Synpcc7942_0341at 336.029 kb on - strand, within Synpcc7942_0341at 336.032 kb on + strand, within Synpcc7942_0341at 336.038 kb on + strand, within Synpcc7942_0341at 336.041 kb on - strand, within Synpcc7942_0341at 336.041 kb on - strand, within Synpcc7942_0341at 336.041 kb on - strand, within Synpcc7942_0341at 336.149 kb on - strandat 336.185 kb on + strandat 336.204 kb on + strandat 336.207 kb on - strandat 336.212 kb on + strandat 336.262 kb on + strandat 336.262 kb on + strandat 336.270 kb on - strandat 336.304 kb on + strandat 336.312 kb on - strandat 336.312 kb on - strandat 336.345 kb on + strandat 336.345 kb on + strandat 336.345 kb on + strandat 336.350 kb on + strandat 336.353 kb on - strandat 336.353 kb on - strandat 336.353 kb on - strandat 336.365 kb on + strandat 336.366 kb on + strandat 336.373 kb on - strandat 336.395 kb on + strand, within Synpcc7942_0342at 336.395 kb on + strand, within Synpcc7942_0342at 336.395 kb on + strand, within Synpcc7942_0342at 336.403 kb on - strand, within Synpcc7942_0342at 336.403 kb on - strand, within Synpcc7942_0342at 336.403 kb on - strand, within Synpcc7942_0342at 336.403 kb on - strand, within Synpcc7942_0342at 336.405 kb on + strand, within Synpcc7942_0342at 336.425 kb on - strand, within Synpcc7942_0342at 336.452 kb on + strand, within Synpcc7942_0342at 336.468 kb on + strand, within Synpcc7942_0342at 336.498 kb on + strand, within Synpcc7942_0342at 336.504 kb on + strand, within Synpcc7942_0342at 336.506 kb on - strand, within Synpcc7942_0342at 336.512 kb on - strand, within Synpcc7942_0342at 336.544 kb on - strand, within Synpcc7942_0342at 336.544 kb on - strand, within Synpcc7942_0342at 336.563 kb on - strand, within Synpcc7942_0342at 336.590 kb on + strandat 336.640 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.00125 mg/ml
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334,105 - Synpcc7942_0339 0.10 -2.0
334,153 + Synpcc7942_0339 0.15 -2.3
334,375 + Synpcc7942_0339 0.35 -1.0
334,429 + Synpcc7942_0339 0.40 -0.0
334,468 + Synpcc7942_0339 0.44 -1.6
334,547 + Synpcc7942_0339 0.51 -0.6
334,758 + Synpcc7942_0339 0.71 -1.2
334,765 + Synpcc7942_0339 0.71 -1.0
334,790 + Synpcc7942_0339 0.74 +1.0
334,821 - Synpcc7942_0339 0.76 -1.3
334,856 + Synpcc7942_0339 0.80 -1.3
334,891 - Synpcc7942_0339 0.83 -1.0
334,954 + Synpcc7942_0339 0.89 -1.0
334,971 + -3.5
335,037 + +1.6
335,046 + +2.8
335,103 - +1.7
335,127 + +2.0
335,127 + -1.6
335,138 - Synpcc7942_0340 0.12 +0.8
335,196 + Synpcc7942_0340 0.21 -1.1
335,223 - Synpcc7942_0340 0.26 -2.8
335,242 + Synpcc7942_0340 0.29 -1.9
335,249 + Synpcc7942_0340 0.31 -1.6
335,249 + Synpcc7942_0340 0.31 -1.6
335,255 - Synpcc7942_0340 0.32 -0.6
335,262 - -0.0
335,273 + Synpcc7942_0340 0.35 -1.0
335,281 - Synpcc7942_0340 0.36 +1.0
335,304 - Synpcc7942_0340 0.40 -2.4
335,334 + Synpcc7942_0340 0.45 +2.3
335,348 - Synpcc7942_0340 0.48 -0.7
335,355 + Synpcc7942_0340 0.49 -2.3
335,363 - Synpcc7942_0340 0.50 +1.0
335,365 + Synpcc7942_0340 0.51 -1.0
335,389 + Synpcc7942_0340 0.55 -3.2
335,392 - Synpcc7942_0340 0.55 +1.6
335,392 - Synpcc7942_0340 0.55 -1.0
335,425 + Synpcc7942_0340 0.61 -0.0
335,426 - Synpcc7942_0340 0.61 -0.0
335,433 - Synpcc7942_0340 0.62 -2.6
335,501 + Synpcc7942_0340 0.74 -0.6
335,501 + Synpcc7942_0340 0.74 -3.8
335,502 - Synpcc7942_0340 0.74 -2.6
335,507 - Synpcc7942_0340 0.75 +0.6
335,509 - Synpcc7942_0340 0.75 -3.2
335,602 - +0.4
335,602 - -3.0
335,602 - +0.6
335,626 - +1.2
335,660 + +1.0
335,770 - Synpcc7942_0341 0.24 +0.6
335,809 + Synpcc7942_0341 0.31 +0.6
335,928 + Synpcc7942_0341 0.51 -0.1
335,937 - Synpcc7942_0341 0.53 +0.4
335,961 + Synpcc7942_0341 0.57 +1.3
335,969 - Synpcc7942_0341 0.59 +1.2
335,980 + Synpcc7942_0341 0.61 +2.0
335,980 + Synpcc7942_0341 0.61 +2.8
335,988 - Synpcc7942_0341 0.62 +0.3
336,029 - Synpcc7942_0341 0.69 -0.0
336,032 + Synpcc7942_0341 0.70 +1.8
336,038 + Synpcc7942_0341 0.71 -2.0
336,041 - Synpcc7942_0341 0.71 -0.4
336,041 - Synpcc7942_0341 0.71 +2.2
336,041 - Synpcc7942_0341 0.71 +0.6
336,149 - -0.0
336,185 + +1.0
336,204 + +0.3
336,207 - -0.0
336,212 + +2.8
336,262 + -0.0
336,262 + -1.0
336,270 - +1.4
336,304 + +1.0
336,312 - +1.0
336,312 - +0.4
336,345 + -1.0
336,345 + -0.0
336,345 + -1.6
336,350 + +1.6
336,353 - -1.0
336,353 - +0.9
336,353 - +2.3
336,365 + -0.0
336,366 + +1.3
336,373 - +0.3
336,395 + Synpcc7942_0342 0.14 -1.6
336,395 + Synpcc7942_0342 0.14 +1.3
336,395 + Synpcc7942_0342 0.14 +0.5
336,403 - Synpcc7942_0342 0.18 +0.7
336,403 - Synpcc7942_0342 0.18 -1.3
336,403 - Synpcc7942_0342 0.18 +0.4
336,403 - Synpcc7942_0342 0.18 +1.3
336,405 + Synpcc7942_0342 0.18 +2.8
336,425 - Synpcc7942_0342 0.27 -1.6
336,452 + Synpcc7942_0342 0.39 -0.2
336,468 + Synpcc7942_0342 0.46 +2.3
336,498 + Synpcc7942_0342 0.59 +2.0
336,504 + Synpcc7942_0342 0.62 -1.0
336,506 - Synpcc7942_0342 0.63 -1.0
336,512 - Synpcc7942_0342 0.65 -1.3
336,544 - Synpcc7942_0342 0.79 +2.3
336,544 - Synpcc7942_0342 0.79 -0.0
336,563 - Synpcc7942_0342 0.88 -1.0
336,590 + +1.0
336,640 + +2.2

Or see this region's nucleotide sequence