Strain Fitness in Pantoea sp. MT58 around IAI47_08410

Experiment: Defined media control, anaerobic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Defined media control, anaerobic
1,780,816	+				+0.6
1,780,978	-		IAI47_08405	0.17	-0.2
1,780,978	-		IAI47_08405	0.17	+0.6
1,780,978	-		IAI47_08405	0.17	+0.7
1,781,059	+		IAI47_08405	0.25	-1.8
1,781,060	-		IAI47_08405	0.25	-0.1
1,781,157	+		IAI47_08405	0.35	-0.5
1,781,157	+		IAI47_08405	0.35	-0.2
1,781,158	-		IAI47_08405	0.35	-0.8
1,781,188	+		IAI47_08405	0.38	+0.9
1,781,188	+		IAI47_08405	0.38	+1.8
1,781,189	-		IAI47_08405	0.39	-0.6
1,781,189	-		IAI47_08405	0.39	+0.1
1,781,214	-		IAI47_08405	0.41	+0.7
1,781,227	-		IAI47_08405	0.43	-0.3
1,781,236	-		IAI47_08405	0.43	-0.2
1,781,247	-		IAI47_08405	0.45	-2.6
1,781,291	+		IAI47_08405	0.49	-1.5
1,781,292	-		IAI47_08405	0.49	-0.8
1,781,433	+		IAI47_08405	0.64	-1.4
1,781,434	-		IAI47_08405	0.64	+2.3
1,781,434	-		IAI47_08405	0.64	-2.1
1,781,434	-		IAI47_08405	0.64	-0.8
1,781,434	-		IAI47_08405	0.64	+0.3
1,781,434	-		IAI47_08405	0.64	+0.1
1,781,435	+		IAI47_08405	0.64	+0.6
1,781,435	+		IAI47_08405	0.64	+0.5
1,781,435	+		IAI47_08405	0.64	+1.4
1,781,435	+		IAI47_08405	0.64	-0.1
1,781,435	+		IAI47_08405	0.64	-0.8
1,781,435	+		IAI47_08405	0.64	+0.9
1,781,435	+		IAI47_08405	0.64	-1.1
1,781,435	+		IAI47_08405	0.64	+0.1
1,781,435	+		IAI47_08405	0.64	+1.2
1,781,435	+		IAI47_08405	0.64	+1.5
1,781,436	-		IAI47_08405	0.64	+0.9
1,781,436	-		IAI47_08405	0.64	+0.2
1,781,436	-		IAI47_08405	0.64	-0.7
1,781,436	-		IAI47_08405	0.64	+0.5
1,781,436	-		IAI47_08405	0.64	-0.1
1,781,436	-		IAI47_08405	0.64	-0.6
1,781,436	-		IAI47_08405	0.64	-0.8
1,781,436	-		IAI47_08405	0.64	-1.4
1,781,436	-		IAI47_08405	0.64	+0.7
1,781,436	-		IAI47_08405	0.64	-1.4
1,781,436	-		IAI47_08405	0.64	-0.1
1,781,486	+		IAI47_08405	0.69	+0.5
1,781,487	-		IAI47_08405	0.69	-0.0
1,781,487	-		IAI47_08405	0.69	-0.8
1,781,497	+		IAI47_08405	0.70	-0.9
1,781,497	+		IAI47_08405	0.70	-1.0
1,781,498	-		IAI47_08405	0.70	+0.4
1,781,498	-		IAI47_08405	0.70	-0.2
1,781,498	-		IAI47_08405	0.70	-0.0
1,781,506	+		IAI47_08405	0.71	+0.9
1,781,507	-		IAI47_08405	0.71	+0.7
1,781,535	-		IAI47_08405	0.74	-1.5
1,781,541	+		IAI47_08405	0.75	+0.3
1,781,541	+		IAI47_08405	0.75	-0.6
1,781,542	-		IAI47_08405	0.75	-0.9
1,781,600	+		IAI47_08405	0.81	-1.1
1,781,601	-		IAI47_08405	0.81	+0.4
1,781,642	-		IAI47_08405	0.85	+0.7
1,781,642	-		IAI47_08405	0.85	+1.8
1,781,642	-		IAI47_08405	0.85	-0.5
1,781,715	+				-0.5
1,781,809	+				-1.5
1,781,866	+		IAI47_08410	0.12	-0.1
1,781,866	+		IAI47_08410	0.12	-0.3
1,781,911	+		IAI47_08410	0.18	-0.3
1,781,911	+		IAI47_08410	0.18	-0.7
1,781,911	+		IAI47_08410	0.18	+0.1
1,781,912	-		IAI47_08410	0.18	-0.2
1,782,046	+		IAI47_08410	0.36	+0.7
1,782,046	+		IAI47_08410	0.36	+0.0
1,782,046	+		IAI47_08410	0.36	-1.1
1,782,110	-		IAI47_08410	0.45	-1.2
1,782,115	+		IAI47_08410	0.46	-1.6
1,782,115	+		IAI47_08410	0.46	-0.3
1,782,116	-		IAI47_08410	0.46	-2.0
1,782,140	+		IAI47_08410	0.49	-0.6
1,782,141	-		IAI47_08410	0.50	-0.1
1,782,141	-		IAI47_08410	0.50	-1.0
1,782,141	-		IAI47_08410	0.50	-1.2
1,782,149	-		IAI47_08410	0.51	+0.0
1,782,149	-		IAI47_08410	0.51	-2.8
1,782,242	-		IAI47_08410	0.63	-2.3
1,782,277	+		IAI47_08410	0.68	-0.9
1,782,278	-		IAI47_08410	0.68	-0.2
1,782,327	+		IAI47_08410	0.75	-0.8
1,782,327	+		IAI47_08410	0.75	-0.1
1,782,327	+		IAI47_08410	0.75	+1.2
1,782,347	-		IAI47_08410	0.78	+1.5
1,782,543	-				-1.8
1,782,591	+				-0.7
1,782,592	-				+1.8
1,782,592	-				-0.9
1,782,592	-				+1.0
1,782,624	+				+0.4
1,782,625	-				-0.7
1,782,625	-				-0.5
1,782,625	-				-2.0
1,782,625	-				-1.0
1,782,628	+				+1.2
1,782,628	+				+0.8
1,782,628	+				+0.2
1,782,628	+				-0.3
1,782,681	+		IAI47_08415	0.23	-0.1
1,782,681	+		IAI47_08415	0.23	-0.3
1,782,681	+		IAI47_08415	0.23	+0.2
1,782,682	-		IAI47_08415	0.23	-0.8
1,782,682	-		IAI47_08415	0.23	-0.9
1,782,682	-		IAI47_08415	0.23	-1.1
1,782,682	-		IAI47_08415	0.23	+0.1
1,782,685	+		IAI47_08415	0.24	-0.0
1,782,686	-		IAI47_08415	0.24	+0.6
1,782,686	-		IAI47_08415	0.24	+1.3
1,782,686	-		IAI47_08415	0.24	+0.1
1,782,710	+		IAI47_08415	0.30	-0.2
1,782,775	+		IAI47_08415	0.47	-0.3
1,782,826	+		IAI47_08415	0.60	+0.3
1,782,891	+		IAI47_08415	0.76	+0.9
1,782,892	-		IAI47_08415	0.76	+1.6
1,782,903	+		IAI47_08415	0.79	+0.5
1,782,962	+				-0.1
1,782,963	-				+0.4
1,782,969	+				-1.8
1,782,969	+				+0.1
1,782,969	+				-1.6
1,782,969	+				+0.1
1,782,969	+				-0.3
1,782,969	+				-0.0
1,782,969	+				-0.8
1,782,970	-				-0.6
1,782,970	-				-1.8
1,782,970	-				-0.6
1,782,970	-				+1.5
1,782,970	-				+0.3
1,782,971	+				-3.3
1,782,971	+				+0.3
1,782,972	-				-0.4
1,782,980	-				-0.9
1,783,007	+				-0.8
1,783,007	+				-1.6
1,783,012	+				-0.9
1,783,012	+				+0.9
1,783,012	+				+0.6
1,783,013	-				-0.0
1,783,013	-				-0.3
1,783,013	-				-0.4
1,783,013	-				-0.6
1,783,016	+				+0.6
1,783,016	+				-0.7
1,783,016	+				-0.8
1,783,016	+				+0.4
1,783,016	+				-2.6
1,783,017	-				+0.6
1,783,017	-				-0.9
1,783,017	-				+0.4
1,783,017	-				+0.7
1,783,017	-				-0.8
1,783,017	-				-0.9
1,783,017	-				+2.8
1,783,017	-				+0.2
1,783,017	-				-0.8
1,783,021	+				+0.7
1,783,030	+				+1.1
1,783,030	+				+0.4
1,783,031	-				+1.7
1,783,131	-				+4.4
1,783,171	+		IAI47_08420	0.14	-0.4
1,783,273	+		IAI47_08420	0.27	-0.9
1,783,304	+		IAI47_08420	0.30	+0.9
1,783,324	+		IAI47_08420	0.33	+0.5
1,783,324	+		IAI47_08420	0.33	+0.1
1,783,324	+		IAI47_08420	0.33	-0.1
1,783,495	-		IAI47_08420	0.54	+1.6