Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22475 and HSERO_RS22480 are separated by 33 nucleotides HSERO_RS22480 and HSERO_RS22485 are separated by 1 nucleotides
HSERO_RS22475: HSERO_RS22475 - 3-oxoacyl-ACP reductase, at 5,144,750 to 5,145,541
_RS22475
HSERO_RS22480: HSERO_RS22480 - dihydroxy-acid dehydratase, at 5,145,575 to 5,147,359
_RS22480
HSERO_RS22485: HSERO_RS22485 - amidohydrolase, at 5,147,361 to 5,148,287
_RS22485
Position (kb) 5145
5146
5147
5148 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 5144.634 kb on + strand at 5144.726 kb on + strand at 5144.843 kb on + strand, within HSERO_RS22475 at 5144.862 kb on - strand, within HSERO_RS22475 at 5144.935 kb on + strand, within HSERO_RS22475 at 5144.943 kb on - strand, within HSERO_RS22475 at 5145.034 kb on - strand, within HSERO_RS22475 at 5145.278 kb on + strand, within HSERO_RS22475 at 5145.381 kb on - strand, within HSERO_RS22475 at 5145.482 kb on - strand at 5145.572 kb on + strand at 5145.690 kb on + strand at 5145.791 kb on - strand, within HSERO_RS22480 at 5145.900 kb on + strand, within HSERO_RS22480 at 5146.074 kb on + strand, within HSERO_RS22480 at 5146.108 kb on + strand, within HSERO_RS22480 at 5146.116 kb on - strand, within HSERO_RS22480 at 5146.180 kb on + strand at 5146.329 kb on + strand, within HSERO_RS22480 at 5146.387 kb on + strand, within HSERO_RS22480 at 5146.547 kb on + strand, within HSERO_RS22480 at 5147.058 kb on + strand, within HSERO_RS22480 at 5147.281 kb on + strand at 5147.325 kb on - strand at 5147.389 kb on + strand at 5147.431 kb on + strand at 5147.490 kb on + strand, within HSERO_RS22485 at 5147.536 kb on - strand, within HSERO_RS22485 at 5147.591 kb on - strand, within HSERO_RS22485 at 5147.891 kb on + strand, within HSERO_RS22485 at 5148.102 kb on + strand, within HSERO_RS22485 at 5148.102 kb on + strand, within HSERO_RS22485 at 5148.143 kb on + strand, within HSERO_RS22485 at 5148.179 kb on - strand, within HSERO_RS22485 at 5148.226 kb on - strand at 5148.229 kb on + strand at 5148.319 kb on + strand at 5148.320 kb on + strand at 5148.358 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 5,144,634 + -0.1 5,144,726 + -1.7 5,144,843 + HSERO_RS22475 0.12 -3.6 5,144,862 - HSERO_RS22475 0.14 -3.9 5,144,935 + HSERO_RS22475 0.23 -3.2 5,144,943 - HSERO_RS22475 0.24 -4.5 5,145,034 - HSERO_RS22475 0.36 -5.6 5,145,278 + HSERO_RS22475 0.67 -4.6 5,145,381 - HSERO_RS22475 0.80 -3.9 5,145,482 - -3.4 5,145,572 + -1.1 5,145,690 + -0.8 5,145,791 - HSERO_RS22480 0.12 -1.0 5,145,900 + HSERO_RS22480 0.18 -0.3 5,146,074 + HSERO_RS22480 0.28 +0.8 5,146,108 + HSERO_RS22480 0.30 -3.4 5,146,116 - HSERO_RS22480 0.30 -1.0 5,146,180 + +0.5 5,146,329 + HSERO_RS22480 0.42 -1.4 5,146,387 + HSERO_RS22480 0.45 -2.1 5,146,547 + HSERO_RS22480 0.54 -1.3 5,147,058 + HSERO_RS22480 0.83 -0.7 5,147,281 + -0.4 5,147,325 - -3.0 5,147,389 + -1.3 5,147,431 + -1.0 5,147,490 + HSERO_RS22485 0.14 -0.9 5,147,536 - HSERO_RS22485 0.19 -2.3 5,147,591 - HSERO_RS22485 0.25 -0.3 5,147,891 + HSERO_RS22485 0.57 -2.3 5,148,102 + HSERO_RS22485 0.80 -1.4 5,148,102 + HSERO_RS22485 0.80 -1.9 5,148,143 + HSERO_RS22485 0.84 -1.9 5,148,179 - HSERO_RS22485 0.88 -1.7 5,148,226 - -1.3 5,148,229 + -0.5 5,148,319 + +0.1 5,148,320 + -1.3 5,148,358 + +0.4
Or see this region's nucleotide sequence