Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS18765 and HSERO_RS18770 are separated by 14 nucleotides HSERO_RS18770 and HSERO_RS18775 overlap by 4 nucleotides HSERO_RS18775 and HSERO_RS18780 are separated by 110 nucleotides HSERO_RS18780 and HSERO_RS18785 are separated by 76 nucleotides
HSERO_RS18765: HSERO_RS18765 - hypothetical protein, at 4,307,847 to 4,308,050
_RS18765
HSERO_RS18770: HSERO_RS18770 - transcriptional regulator, at 4,308,065 to 4,308,292
_RS18770
HSERO_RS18775: HSERO_RS18775 - phage killer protein, at 4,308,289 to 4,308,672
_RS18775
HSERO_RS18780: HSERO_RS18780 - 3-(2-hydroxyphenyl) propionic acid transporter, at 4,308,783 to 4,310,180
_RS18780
HSERO_RS18785: HSERO_RS18785 - polymerase, at 4,310,257 to 4,311,399
_RS18785
Position (kb) 4308
4309
4310
4311 Strain fitness (log2 ratio) -2
-1
0
1 at 4307.849 kb on + strand at 4307.875 kb on + strand, within HSERO_RS18765 at 4307.881 kb on + strand, within HSERO_RS18765 at 4308.159 kb on + strand, within HSERO_RS18770 at 4308.159 kb on + strand, within HSERO_RS18770 at 4308.167 kb on - strand, within HSERO_RS18770 at 4308.167 kb on - strand, within HSERO_RS18770 at 4308.378 kb on + strand, within HSERO_RS18775 at 4308.378 kb on + strand, within HSERO_RS18775 at 4308.466 kb on + strand, within HSERO_RS18775 at 4308.493 kb on + strand, within HSERO_RS18775 at 4308.499 kb on - strand, within HSERO_RS18775 at 4308.516 kb on - strand, within HSERO_RS18775 at 4308.553 kb on - strand at 4308.650 kb on + strand at 4308.734 kb on - strand at 4308.781 kb on + strand at 4308.781 kb on + strand at 4308.789 kb on - strand at 4308.789 kb on - strand at 4308.831 kb on + strand at 4308.839 kb on - strand at 4308.839 kb on - strand at 4308.882 kb on - strand at 4308.950 kb on - strand, within HSERO_RS18780 at 4309.107 kb on + strand, within HSERO_RS18780 at 4309.158 kb on - strand at 4309.159 kb on - strand, within HSERO_RS18780 at 4309.530 kb on - strand, within HSERO_RS18780 at 4309.556 kb on + strand, within HSERO_RS18780 at 4309.644 kb on - strand, within HSERO_RS18780 at 4309.855 kb on - strand, within HSERO_RS18780 at 4309.984 kb on - strand, within HSERO_RS18780 at 4310.184 kb on + strand at 4310.184 kb on + strand at 4310.190 kb on - strand at 4310.269 kb on - strand at 4310.281 kb on - strand at 4310.356 kb on + strand at 4310.379 kb on - strand, within HSERO_RS18785 at 4310.401 kb on + strand, within HSERO_RS18785 at 4310.428 kb on + strand, within HSERO_RS18785 at 4310.561 kb on - strand, within HSERO_RS18785 at 4310.662 kb on - strand, within HSERO_RS18785 at 4310.682 kb on - strand, within HSERO_RS18785 at 4310.723 kb on + strand, within HSERO_RS18785 at 4310.963 kb on + strand, within HSERO_RS18785 at 4310.985 kb on - strand, within HSERO_RS18785 at 4311.004 kb on - strand, within HSERO_RS18785 at 4311.042 kb on - strand, within HSERO_RS18785 at 4311.091 kb on - strand, within HSERO_RS18785 at 4311.121 kb on - strand, within HSERO_RS18785
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 4,307,849 + +0.4 4,307,875 + HSERO_RS18765 0.14 +0.3 4,307,881 + HSERO_RS18765 0.17 -2.0 4,308,159 + HSERO_RS18770 0.41 -0.6 4,308,159 + HSERO_RS18770 0.41 +0.1 4,308,167 - HSERO_RS18770 0.45 -0.8 4,308,167 - HSERO_RS18770 0.45 +0.6 4,308,378 + HSERO_RS18775 0.23 -0.5 4,308,378 + HSERO_RS18775 0.23 -0.5 4,308,466 + HSERO_RS18775 0.46 +0.7 4,308,493 + HSERO_RS18775 0.53 -1.4 4,308,499 - HSERO_RS18775 0.55 -0.1 4,308,516 - HSERO_RS18775 0.59 +0.7 4,308,553 - -1.6 4,308,650 + -0.2 4,308,734 - -0.2 4,308,781 + -0.5 4,308,781 + +0.9 4,308,789 - -0.4 4,308,789 - +1.4 4,308,831 + +0.5 4,308,839 - -0.7 4,308,839 - -1.4 4,308,882 - +0.0 4,308,950 - HSERO_RS18780 0.12 -0.2 4,309,107 + HSERO_RS18780 0.23 -0.5 4,309,158 - +1.0 4,309,159 - HSERO_RS18780 0.27 +0.9 4,309,530 - HSERO_RS18780 0.53 -0.5 4,309,556 + HSERO_RS18780 0.55 -0.4 4,309,644 - HSERO_RS18780 0.62 -0.1 4,309,855 - HSERO_RS18780 0.77 +0.8 4,309,984 - HSERO_RS18780 0.86 -0.3 4,310,184 + +0.5 4,310,184 + -0.0 4,310,190 - -0.2 4,310,269 - +0.2 4,310,281 - +0.1 4,310,356 + -0.6 4,310,379 - HSERO_RS18785 0.11 +0.7 4,310,401 + HSERO_RS18785 0.13 -0.5 4,310,428 + HSERO_RS18785 0.15 +0.4 4,310,561 - HSERO_RS18785 0.27 +0.4 4,310,662 - HSERO_RS18785 0.35 -0.0 4,310,682 - HSERO_RS18785 0.37 +0.9 4,310,723 + HSERO_RS18785 0.41 -0.6 4,310,963 + HSERO_RS18785 0.62 +0.5 4,310,985 - HSERO_RS18785 0.64 +0.4 4,311,004 - HSERO_RS18785 0.65 -0.2 4,311,042 - HSERO_RS18785 0.69 +0.7 4,311,091 - HSERO_RS18785 0.73 -0.3 4,311,121 - HSERO_RS18785 0.76 -0.3
Or see this region's nucleotide sequence