Experiment: PYE with Spectinomycin 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00583 and CCNA_00585 are separated by 118 nucleotides CCNA_00585 and CCNA_00586 are separated by 35 nucleotides
CCNA_00583: CCNA_00583 - lysozyme family protein, at 611,838 to 613,205
_00583
CCNA_00585: CCNA_00585 - hypothetical protein, at 613,324 to 614,379
_00585
CCNA_00586: CCNA_00586 - LytR/AlgR-family transcriptional regulator, at 614,415 to 615,746
_00586
Position (kb) 613
614
615 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 612.343 kb on + strand, within CCNA_00583 at 612.364 kb on + strand, within CCNA_00583 at 612.371 kb on - strand, within CCNA_00583 at 612.372 kb on - strand, within CCNA_00583 at 612.372 kb on - strand, within CCNA_00583 at 612.372 kb on - strand, within CCNA_00583 at 612.372 kb on - strand, within CCNA_00583 at 612.404 kb on - strand, within CCNA_00583 at 612.411 kb on + strand, within CCNA_00583 at 612.419 kb on - strand, within CCNA_00583 at 612.420 kb on - strand, within CCNA_00583 at 612.433 kb on + strand, within CCNA_00583 at 612.433 kb on + strand, within CCNA_00583 at 612.456 kb on + strand, within CCNA_00583 at 612.456 kb on + strand, within CCNA_00583 at 612.461 kb on + strand, within CCNA_00583 at 612.464 kb on - strand, within CCNA_00583 at 612.464 kb on - strand, within CCNA_00583 at 612.469 kb on - strand, within CCNA_00583 at 612.484 kb on + strand, within CCNA_00583 at 612.484 kb on + strand, within CCNA_00583 at 612.569 kb on + strand, within CCNA_00583 at 612.569 kb on + strand, within CCNA_00583 at 612.595 kb on + strand, within CCNA_00583 at 612.618 kb on + strand, within CCNA_00583 at 612.621 kb on - strand, within CCNA_00583 at 612.621 kb on - strand, within CCNA_00583 at 612.621 kb on - strand at 612.621 kb on - strand, within CCNA_00583 at 612.626 kb on - strand, within CCNA_00583 at 612.626 kb on - strand, within CCNA_00583 at 612.657 kb on - strand, within CCNA_00583 at 612.677 kb on - strand, within CCNA_00583 at 612.724 kb on - strand, within CCNA_00583 at 612.756 kb on + strand, within CCNA_00583 at 612.762 kb on + strand, within CCNA_00583 at 612.829 kb on - strand, within CCNA_00583 at 612.830 kb on + strand, within CCNA_00583 at 612.841 kb on + strand, within CCNA_00583 at 612.866 kb on - strand, within CCNA_00583 at 612.888 kb on - strand, within CCNA_00583 at 613.032 kb on - strand, within CCNA_00583 at 613.045 kb on + strand, within CCNA_00583 at 613.046 kb on - strand, within CCNA_00583 at 613.094 kb on - strand at 613.094 kb on - strand at 613.110 kb on - strand at 613.111 kb on - strand at 613.147 kb on + strand at 613.394 kb on + strand at 613.394 kb on + strand at 613.420 kb on + strand at 613.425 kb on + strand at 613.436 kb on + strand, within CCNA_00585 at 613.439 kb on - strand, within CCNA_00585 at 613.455 kb on + strand, within CCNA_00585 at 613.464 kb on + strand, within CCNA_00585 at 613.464 kb on + strand, within CCNA_00585 at 613.464 kb on + strand, within CCNA_00585 at 613.464 kb on + strand, within CCNA_00585 at 613.464 kb on + strand, within CCNA_00585 at 613.464 kb on + strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.478 kb on + strand, within CCNA_00585 at 613.478 kb on + strand, within CCNA_00585 at 613.486 kb on - strand, within CCNA_00585 at 613.488 kb on + strand, within CCNA_00585 at 613.489 kb on + strand, within CCNA_00585 at 613.489 kb on + strand, within CCNA_00585 at 613.496 kb on - strand, within CCNA_00585 at 613.496 kb on - strand, within CCNA_00585 at 613.512 kb on + strand, within CCNA_00585 at 613.520 kb on - strand, within CCNA_00585 at 613.521 kb on - strand, within CCNA_00585 at 613.590 kb on + strand, within CCNA_00585 at 613.601 kb on + strand, within CCNA_00585 at 613.639 kb on + strand, within CCNA_00585 at 613.639 kb on - strand, within CCNA_00585 at 613.728 kb on - strand, within CCNA_00585 at 613.737 kb on + strand, within CCNA_00585 at 613.782 kb on + strand, within CCNA_00585 at 613.782 kb on + strand, within CCNA_00585 at 613.782 kb on + strand, within CCNA_00585 at 613.880 kb on - strand, within CCNA_00585 at 613.902 kb on - strand, within CCNA_00585 at 613.926 kb on + strand, within CCNA_00585 at 613.966 kb on + strand, within CCNA_00585 at 613.971 kb on + strand, within CCNA_00585 at 613.971 kb on + strand, within CCNA_00585 at 614.029 kb on - strand, within CCNA_00585 at 614.049 kb on + strand, within CCNA_00585 at 614.051 kb on + strand, within CCNA_00585 at 614.051 kb on + strand, within CCNA_00585 at 614.054 kb on - strand, within CCNA_00585 at 614.079 kb on + strand, within CCNA_00585 at 614.079 kb on + strand, within CCNA_00585 at 614.087 kb on - strand, within CCNA_00585 at 614.087 kb on - strand, within CCNA_00585 at 614.091 kb on + strand, within CCNA_00585 at 614.094 kb on - strand, within CCNA_00585 at 614.095 kb on + strand, within CCNA_00585 at 614.096 kb on + strand, within CCNA_00585 at 614.104 kb on - strand, within CCNA_00585 at 614.104 kb on - strand, within CCNA_00585 at 614.113 kb on - strand, within CCNA_00585 at 614.129 kb on + strand, within CCNA_00585 at 614.129 kb on + strand, within CCNA_00585 at 614.129 kb on + strand, within CCNA_00585 at 614.130 kb on - strand, within CCNA_00585 at 614.137 kb on - strand, within CCNA_00585 at 614.140 kb on + strand, within CCNA_00585 at 614.140 kb on + strand, within CCNA_00585 at 614.140 kb on + strand, within CCNA_00585 at 614.140 kb on + strand, within CCNA_00585 at 614.148 kb on - strand, within CCNA_00585 at 614.158 kb on - strand, within CCNA_00585 at 614.158 kb on - strand, within CCNA_00585 at 614.211 kb on - strand, within CCNA_00585 at 614.222 kb on + strand, within CCNA_00585 at 614.222 kb on + strand, within CCNA_00585 at 614.230 kb on - strand, within CCNA_00585 at 614.261 kb on + strand, within CCNA_00585 at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.313 kb on + strand at 614.313 kb on + strand at 614.321 kb on - strand at 614.321 kb on - strand at 614.321 kb on - strand at 614.321 kb on - strand at 614.345 kb on + strand at 614.407 kb on + strand at 614.407 kb on + strand at 614.415 kb on - strand at 614.438 kb on + strand at 614.444 kb on + strand at 614.454 kb on + strand at 614.454 kb on + strand at 614.454 kb on + strand at 614.462 kb on - strand at 614.462 kb on - strand at 614.502 kb on + strand at 614.512 kb on + strand at 614.631 kb on + strand, within CCNA_00586 at 614.654 kb on - strand, within CCNA_00586 at 614.672 kb on + strand, within CCNA_00586 at 614.672 kb on + strand, within CCNA_00586 at 614.680 kb on - strand, within CCNA_00586 at 614.686 kb on - strand, within CCNA_00586 at 614.695 kb on + strand, within CCNA_00586 at 614.717 kb on + strand, within CCNA_00586 at 614.757 kb on + strand, within CCNA_00586 at 614.782 kb on + strand, within CCNA_00586 at 614.786 kb on + strand, within CCNA_00586 at 614.787 kb on + strand, within CCNA_00586 at 614.794 kb on - strand, within CCNA_00586 at 614.805 kb on + strand, within CCNA_00586 at 614.826 kb on - strand, within CCNA_00586 at 614.855 kb on + strand, within CCNA_00586 at 614.886 kb on - strand, within CCNA_00586 at 614.922 kb on + strand, within CCNA_00586 at 614.923 kb on + strand, within CCNA_00586 at 614.923 kb on + strand, within CCNA_00586 at 614.931 kb on - strand, within CCNA_00586 at 614.931 kb on - strand, within CCNA_00586 at 614.931 kb on - strand, within CCNA_00586 at 614.931 kb on - strand, within CCNA_00586 at 614.933 kb on + strand, within CCNA_00586 at 614.941 kb on - strand, within CCNA_00586 at 614.943 kb on + strand, within CCNA_00586 at 614.951 kb on - strand, within CCNA_00586 at 614.951 kb on - strand, within CCNA_00586 at 614.951 kb on - strand, within CCNA_00586 at 614.985 kb on + strand, within CCNA_00586 at 615.016 kb on + strand, within CCNA_00586 at 615.069 kb on + strand, within CCNA_00586 at 615.071 kb on - strand, within CCNA_00586 at 615.077 kb on - strand, within CCNA_00586 at 615.079 kb on - strand, within CCNA_00586 at 615.082 kb on + strand, within CCNA_00586 at 615.086 kb on + strand, within CCNA_00586 at 615.189 kb on + strand, within CCNA_00586 at 615.217 kb on + strand, within CCNA_00586 at 615.222 kb on - strand, within CCNA_00586 at 615.236 kb on + strand, within CCNA_00586 at 615.244 kb on + strand, within CCNA_00586 at 615.260 kb on - strand, within CCNA_00586 at 615.284 kb on + strand, within CCNA_00586 at 615.293 kb on - strand, within CCNA_00586 at 615.340 kb on + strand, within CCNA_00586
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Spectinomycin 0.08 mg/ml remove 612,343 + CCNA_00583 0.37 +2.5 612,364 + CCNA_00583 0.38 -1.3 612,371 - CCNA_00583 0.39 -0.2 612,372 - CCNA_00583 0.39 +0.2 612,372 - CCNA_00583 0.39 -0.7 612,372 - CCNA_00583 0.39 -0.1 612,372 - CCNA_00583 0.39 -1.0 612,404 - CCNA_00583 0.41 +1.8 612,411 + CCNA_00583 0.42 -1.1 612,419 - CCNA_00583 0.42 -0.9 612,420 - CCNA_00583 0.43 -1.7 612,433 + CCNA_00583 0.43 -0.4 612,433 + CCNA_00583 0.43 -0.6 612,456 + CCNA_00583 0.45 +1.0 612,456 + CCNA_00583 0.45 -0.6 612,461 + CCNA_00583 0.46 -1.2 612,464 - CCNA_00583 0.46 -0.1 612,464 - CCNA_00583 0.46 -1.6 612,469 - CCNA_00583 0.46 +0.8 612,484 + CCNA_00583 0.47 -1.9 612,484 + CCNA_00583 0.47 -0.2 612,569 + CCNA_00583 0.53 -1.9 612,569 + CCNA_00583 0.53 -0.9 612,595 + CCNA_00583 0.55 +1.5 612,618 + CCNA_00583 0.57 -0.7 612,621 - CCNA_00583 0.57 -2.4 612,621 - CCNA_00583 0.57 -1.2 612,621 - +2.2 612,621 - CCNA_00583 0.57 -0.2 612,626 - CCNA_00583 0.58 -0.2 612,626 - CCNA_00583 0.58 -2.0 612,657 - CCNA_00583 0.60 -0.7 612,677 - CCNA_00583 0.61 -0.4 612,724 - CCNA_00583 0.65 +0.8 612,756 + CCNA_00583 0.67 +1.2 612,762 + CCNA_00583 0.68 -0.7 612,829 - CCNA_00583 0.72 -3.0 612,830 + CCNA_00583 0.73 -0.2 612,841 + CCNA_00583 0.73 +0.2 612,866 - CCNA_00583 0.75 +1.4 612,888 - CCNA_00583 0.77 -1.3 613,032 - CCNA_00583 0.87 +0.6 613,045 + CCNA_00583 0.88 -0.2 613,046 - CCNA_00583 0.88 -0.1 613,094 - -0.6 613,094 - -0.5 613,110 - +0.6 613,111 - -0.1 613,147 + +0.2 613,394 + +0.7 613,394 + -2.8 613,420 + +1.0 613,425 + -0.1 613,436 + CCNA_00585 0.11 -1.0 613,439 - CCNA_00585 0.11 -0.5 613,455 + CCNA_00585 0.12 +1.6 613,464 + CCNA_00585 0.13 -0.7 613,464 + CCNA_00585 0.13 -0.5 613,464 + CCNA_00585 0.13 +0.0 613,464 + CCNA_00585 0.13 +0.6 613,464 + CCNA_00585 0.13 -1.6 613,464 + CCNA_00585 0.13 -1.8 613,472 - CCNA_00585 0.14 -0.7 613,472 - CCNA_00585 0.14 +0.3 613,472 - CCNA_00585 0.14 +0.1 613,472 - CCNA_00585 0.14 +2.8 613,478 + CCNA_00585 0.15 +2.4 613,478 + CCNA_00585 0.15 +2.8 613,486 - CCNA_00585 0.15 +1.0 613,488 + CCNA_00585 0.16 -0.9 613,489 + CCNA_00585 0.16 -1.5 613,489 + CCNA_00585 0.16 +0.6 613,496 - CCNA_00585 0.16 +0.5 613,496 - CCNA_00585 0.16 -0.4 613,512 + CCNA_00585 0.18 -0.0 613,520 - CCNA_00585 0.19 +0.5 613,521 - CCNA_00585 0.19 -0.5 613,590 + CCNA_00585 0.25 -0.5 613,601 + CCNA_00585 0.26 +0.1 613,639 + CCNA_00585 0.30 +0.1 613,639 - CCNA_00585 0.30 -1.6 613,728 - CCNA_00585 0.38 -0.5 613,737 + CCNA_00585 0.39 -0.5 613,782 + CCNA_00585 0.43 -0.6 613,782 + CCNA_00585 0.43 -1.1 613,782 + CCNA_00585 0.43 +0.6 613,880 - CCNA_00585 0.53 -1.3 613,902 - CCNA_00585 0.55 -1.0 613,926 + CCNA_00585 0.57 -1.1 613,966 + CCNA_00585 0.61 -1.0 613,971 + CCNA_00585 0.61 +0.6 613,971 + CCNA_00585 0.61 +0.2 614,029 - CCNA_00585 0.67 -1.4 614,049 + CCNA_00585 0.69 -0.6 614,051 + CCNA_00585 0.69 -1.6 614,051 + CCNA_00585 0.69 -0.0 614,054 - CCNA_00585 0.69 -0.8 614,079 + CCNA_00585 0.71 -0.8 614,079 + CCNA_00585 0.71 -0.8 614,087 - CCNA_00585 0.72 +0.3 614,087 - CCNA_00585 0.72 -1.1 614,091 + CCNA_00585 0.73 +0.3 614,094 - CCNA_00585 0.73 +0.3 614,095 + CCNA_00585 0.73 -1.9 614,096 + CCNA_00585 0.73 -2.0 614,104 - CCNA_00585 0.74 +1.0 614,104 - CCNA_00585 0.74 -2.6 614,113 - CCNA_00585 0.75 -0.1 614,129 + CCNA_00585 0.76 -0.7 614,129 + CCNA_00585 0.76 -0.3 614,129 + CCNA_00585 0.76 -0.4 614,130 - CCNA_00585 0.76 -0.3 614,137 - CCNA_00585 0.77 +0.1 614,140 + CCNA_00585 0.77 -0.3 614,140 + CCNA_00585 0.77 +1.0 614,140 + CCNA_00585 0.77 -0.2 614,140 + CCNA_00585 0.77 -1.2 614,148 - CCNA_00585 0.78 +0.5 614,158 - CCNA_00585 0.79 +1.5 614,158 - CCNA_00585 0.79 -0.3 614,211 - CCNA_00585 0.84 -1.1 614,222 + CCNA_00585 0.85 +1.1 614,222 + CCNA_00585 0.85 -0.6 614,230 - CCNA_00585 0.86 +0.3 614,261 + CCNA_00585 0.89 -0.9 614,280 + +1.8 614,280 + -0.0 614,280 + +0.0 614,280 + +0.3 614,280 + +1.1 614,280 + -0.9 614,280 + +0.2 614,280 + -0.7 614,280 + -1.2 614,280 + +0.7 614,280 + +0.3 614,280 + +0.2 614,280 + -1.3 614,280 + -0.3 614,280 + +0.1 614,280 + -0.4 614,280 + -0.4 614,280 + -0.6 614,280 + -0.1 614,280 + -0.2 614,280 + +0.4 614,280 + -0.4 614,280 + -0.4 614,280 + -1.2 614,280 + +0.4 614,280 + -0.8 614,280 + -0.4 614,280 + -0.7 614,280 + +0.5 614,280 + -0.5 614,280 + +1.6 614,280 + -1.4 614,280 + -0.1 614,280 + +1.1 614,280 + +0.1 614,280 + -1.2 614,280 + -2.4 614,280 + -1.2 614,280 + -2.0 614,280 + -1.1 614,280 + -0.9 614,280 + +0.2 614,280 + -0.6 614,280 + -0.6 614,280 + +0.7 614,280 + +0.3 614,280 + -0.6 614,280 + -0.5 614,280 + +0.5 614,280 + +1.8 614,280 + +0.7 614,280 + -0.4 614,288 - -0.9 614,288 - +1.8 614,288 - +1.3 614,288 - -2.0 614,288 - +1.0 614,288 - +1.2 614,288 - +0.1 614,288 - -0.9 614,288 - -0.9 614,288 - -0.5 614,288 - -0.9 614,288 - +1.5 614,288 - +0.1 614,288 - -0.3 614,288 - -2.0 614,288 - +1.0 614,288 - +0.6 614,288 - -1.5 614,288 - -1.7 614,288 - -0.7 614,288 - +0.1 614,288 - -2.5 614,288 - -3.0 614,288 - -0.9 614,288 - -1.1 614,288 - -0.4 614,288 - -0.3 614,288 - -0.5 614,288 - -0.7 614,288 - +0.6 614,288 - +0.5 614,288 - +0.6 614,288 - -1.5 614,288 - -2.5 614,288 - +0.5 614,288 - -0.4 614,288 - +1.8 614,313 + +1.2 614,313 + +0.5 614,321 - -0.1 614,321 - -1.3 614,321 - +0.1 614,321 - -1.7 614,345 + +1.5 614,407 + -1.0 614,407 + +1.1 614,415 - -0.7 614,438 + -0.7 614,444 + -0.9 614,454 + -2.1 614,454 + +0.8 614,454 + -2.0 614,462 - -1.3 614,462 - -1.0 614,502 + +0.5 614,512 + -2.2 614,631 + CCNA_00586 0.16 -0.7 614,654 - CCNA_00586 0.18 +0.3 614,672 + CCNA_00586 0.19 +0.3 614,672 + CCNA_00586 0.19 +0.3 614,680 - CCNA_00586 0.20 -0.2 614,686 - CCNA_00586 0.20 +1.0 614,695 + CCNA_00586 0.21 +1.8 614,717 + CCNA_00586 0.23 +0.3 614,757 + CCNA_00586 0.26 -1.1 614,782 + CCNA_00586 0.28 -0.2 614,786 + CCNA_00586 0.28 -1.6 614,787 + CCNA_00586 0.28 +0.5 614,794 - CCNA_00586 0.28 +0.6 614,805 + CCNA_00586 0.29 +1.5 614,826 - CCNA_00586 0.31 -0.1 614,855 + CCNA_00586 0.33 +0.7 614,886 - CCNA_00586 0.35 +0.7 614,922 + CCNA_00586 0.38 +2.8 614,923 + CCNA_00586 0.38 +0.5 614,923 + CCNA_00586 0.38 +0.2 614,931 - CCNA_00586 0.39 -1.6 614,931 - CCNA_00586 0.39 -0.6 614,931 - CCNA_00586 0.39 -0.2 614,931 - CCNA_00586 0.39 +0.8 614,933 + CCNA_00586 0.39 -0.3 614,941 - CCNA_00586 0.39 -0.3 614,943 + CCNA_00586 0.40 +1.5 614,951 - CCNA_00586 0.40 -1.1 614,951 - CCNA_00586 0.40 -2.2 614,951 - CCNA_00586 0.40 -0.2 614,985 + CCNA_00586 0.43 -0.5 615,016 + CCNA_00586 0.45 +0.6 615,069 + CCNA_00586 0.49 +1.9 615,071 - CCNA_00586 0.49 +0.0 615,077 - CCNA_00586 0.50 -0.7 615,079 - CCNA_00586 0.50 -0.4 615,082 + CCNA_00586 0.50 +1.1 615,086 + CCNA_00586 0.50 -0.3 615,189 + CCNA_00586 0.58 -1.0 615,217 + CCNA_00586 0.60 +0.8 615,222 - CCNA_00586 0.61 +0.8 615,236 + CCNA_00586 0.62 -0.1 615,244 + CCNA_00586 0.62 +0.1 615,260 - CCNA_00586 0.63 +0.3 615,284 + CCNA_00586 0.65 +2.0 615,293 - CCNA_00586 0.66 -1.7 615,340 + CCNA_00586 0.69 -0.2
Or see this region's nucleotide sequence