Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00356

Experiment: PYE with Spectinomycin 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00355 and CCNA_00356 are separated by 70 nucleotidesCCNA_00356 and CCNA_00357 are separated by 108 nucleotides CCNA_00355: CCNA_00355 - hypothetical protein with pentapeptide repeats, at 371,323 to 372,567 _00355 CCNA_00356: CCNA_00356 - outer membrane protein, at 372,638 to 373,402 _00356 CCNA_00357: CCNA_00357 - secretory tripeptidyl aminopeptidase, at 373,511 to 374,938 _00357 Position (kb) 372 373 374Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 371.641 kb on - strand, within CCNA_00355at 371.678 kb on + strand, within CCNA_00355at 371.712 kb on + strand, within CCNA_00355at 371.743 kb on - strand, within CCNA_00355at 371.768 kb on + strand, within CCNA_00355at 371.778 kb on + strand, within CCNA_00355at 371.786 kb on + strand, within CCNA_00355at 371.844 kb on - strand, within CCNA_00355at 371.854 kb on - strand, within CCNA_00355at 371.896 kb on + strand, within CCNA_00355at 371.898 kb on + strand, within CCNA_00355at 371.906 kb on - strand, within CCNA_00355at 371.906 kb on - strand, within CCNA_00355at 371.931 kb on + strand, within CCNA_00355at 371.931 kb on + strand, within CCNA_00355at 371.931 kb on + strand, within CCNA_00355at 371.931 kb on + strand, within CCNA_00355at 371.936 kb on + strand, within CCNA_00355at 371.939 kb on - strand, within CCNA_00355at 371.944 kb on - strand, within CCNA_00355at 371.946 kb on + strand, within CCNA_00355at 371.946 kb on + strand, within CCNA_00355at 371.954 kb on - strandat 371.954 kb on - strand, within CCNA_00355at 371.954 kb on - strand, within CCNA_00355at 371.971 kb on + strand, within CCNA_00355at 371.971 kb on + strand, within CCNA_00355at 371.971 kb on + strand, within CCNA_00355at 371.971 kb on + strand, within CCNA_00355at 371.971 kb on + strand, within CCNA_00355at 371.971 kb on + strand, within CCNA_00355at 371.971 kb on + strand, within CCNA_00355at 371.979 kb on - strand, within CCNA_00355at 371.979 kb on - strand, within CCNA_00355at 371.979 kb on - strand, within CCNA_00355at 371.989 kb on - strand, within CCNA_00355at 372.001 kb on + strand, within CCNA_00355at 372.004 kb on - strand, within CCNA_00355at 372.009 kb on - strand, within CCNA_00355at 372.009 kb on - strand, within CCNA_00355at 372.009 kb on - strand, within CCNA_00355at 372.011 kb on + strand, within CCNA_00355at 372.011 kb on + strand, within CCNA_00355at 372.023 kb on + strand, within CCNA_00355at 372.024 kb on - strand, within CCNA_00355at 372.024 kb on - strand, within CCNA_00355at 372.024 kb on - strand, within CCNA_00355at 372.031 kb on - strand, within CCNA_00355at 372.046 kb on - strand, within CCNA_00355at 372.234 kb on + strand, within CCNA_00355at 372.240 kb on - strand, within CCNA_00355at 372.247 kb on + strand, within CCNA_00355at 372.257 kb on + strand, within CCNA_00355at 372.265 kb on - strand, within CCNA_00355at 372.270 kb on - strand, within CCNA_00355at 372.287 kb on + strand, within CCNA_00355at 372.295 kb on - strand, within CCNA_00355at 372.302 kb on + strand, within CCNA_00355at 372.302 kb on + strand, within CCNA_00355at 372.302 kb on + strand, within CCNA_00355at 372.302 kb on + strand, within CCNA_00355at 372.310 kb on - strand, within CCNA_00355at 372.310 kb on - strand, within CCNA_00355at 372.315 kb on - strand, within CCNA_00355at 372.322 kb on + strand, within CCNA_00355at 372.332 kb on + strand, within CCNA_00355at 372.342 kb on + strand, within CCNA_00355at 372.342 kb on + strand, within CCNA_00355at 372.342 kb on + strand, within CCNA_00355at 372.347 kb on + strand, within CCNA_00355at 372.360 kb on - strand, within CCNA_00355at 372.362 kb on + strand, within CCNA_00355at 372.365 kb on - strand, within CCNA_00355at 372.412 kb on + strand, within CCNA_00355at 372.412 kb on + strand, within CCNA_00355at 372.412 kb on + strand, within CCNA_00355at 372.412 kb on + strand, within CCNA_00355at 372.412 kb on + strand, within CCNA_00355at 372.412 kb on + strand, within CCNA_00355at 372.412 kb on + strand, within CCNA_00355at 372.420 kb on - strand, within CCNA_00355at 372.420 kb on - strand, within CCNA_00355at 372.420 kb on - strand, within CCNA_00355at 372.435 kb on - strand, within CCNA_00355at 372.437 kb on + strand, within CCNA_00355at 372.437 kb on + strand, within CCNA_00355at 372.440 kb on - strand, within CCNA_00355at 372.482 kb on + strandat 372.502 kb on + strandat 372.525 kb on - strandat 372.618 kb on + strandat 372.718 kb on + strand, within CCNA_00356at 372.778 kb on + strand, within CCNA_00356at 372.864 kb on + strand, within CCNA_00356at 372.872 kb on + strand, within CCNA_00356at 372.880 kb on - strand, within CCNA_00356at 372.895 kb on + strand, within CCNA_00356at 372.972 kb on + strand, within CCNA_00356at 372.977 kb on + strand, within CCNA_00356at 372.990 kb on - strand, within CCNA_00356at 372.996 kb on + strand, within CCNA_00356at 373.004 kb on - strand, within CCNA_00356at 373.027 kb on - strand, within CCNA_00356at 373.032 kb on + strand, within CCNA_00356at 373.040 kb on + strand, within CCNA_00356at 373.043 kb on - strand, within CCNA_00356at 373.079 kb on + strand, within CCNA_00356at 373.087 kb on - strand, within CCNA_00356at 373.118 kb on - strand, within CCNA_00356at 373.156 kb on + strand, within CCNA_00356at 373.160 kb on - strand, within CCNA_00356at 373.162 kb on - strand, within CCNA_00356at 373.172 kb on + strand, within CCNA_00356at 373.187 kb on + strand, within CCNA_00356at 373.190 kb on - strand, within CCNA_00356at 373.192 kb on + strand, within CCNA_00356at 373.200 kb on - strand, within CCNA_00356at 373.290 kb on + strand, within CCNA_00356at 373.321 kb on + strand, within CCNA_00356at 373.331 kb on + strandat 373.418 kb on + strandat 373.418 kb on + strandat 373.418 kb on + strandat 373.418 kb on + strandat 373.418 kb on + strandat 373.418 kb on + strandat 373.426 kb on - strandat 373.426 kb on - strandat 373.426 kb on - strandat 373.449 kb on - strandat 373.458 kb on + strandat 373.458 kb on + strandat 373.458 kb on + strandat 373.458 kb on + strandat 373.458 kb on + strandat 373.458 kb on + strandat 373.458 kb on + strandat 373.458 kb on + strandat 373.458 kb on + strandat 373.458 kb on + strandat 373.466 kb on - strandat 373.466 kb on - strandat 373.478 kb on - strandat 373.478 kb on - strandat 373.497 kb on + strandat 373.499 kb on + strandat 373.499 kb on + strandat 373.515 kb on - strandat 373.525 kb on + strandat 373.525 kb on + strandat 373.525 kb on + strandat 373.533 kb on - strandat 373.533 kb on - strandat 373.552 kb on + strandat 373.562 kb on + strandat 373.597 kb on + strandat 373.605 kb on - strandat 373.610 kb on + strandat 373.664 kb on + strand, within CCNA_00357at 373.671 kb on - strand, within CCNA_00357at 373.687 kb on + strand, within CCNA_00357at 373.696 kb on - strand, within CCNA_00357at 373.712 kb on + strand, within CCNA_00357at 373.738 kb on + strand, within CCNA_00357at 373.738 kb on + strand, within CCNA_00357at 373.746 kb on - strand, within CCNA_00357at 373.788 kb on + strand, within CCNA_00357at 373.830 kb on - strand, within CCNA_00357at 373.874 kb on + strand, within CCNA_00357at 373.877 kb on - strand, within CCNA_00357at 373.877 kb on - strand, within CCNA_00357at 373.879 kb on + strand, within CCNA_00357at 373.879 kb on + strand, within CCNA_00357at 373.898 kb on + strand, within CCNA_00357at 373.902 kb on - strand, within CCNA_00357at 373.906 kb on - strand, within CCNA_00357at 373.906 kb on - strand, within CCNA_00357at 373.912 kb on - strand, within CCNA_00357at 373.925 kb on + strand, within CCNA_00357at 373.928 kb on - strand, within CCNA_00357at 373.970 kb on - strand, within CCNA_00357at 373.996 kb on + strand, within CCNA_00357at 374.011 kb on - strand, within CCNA_00357at 374.012 kb on - strand, within CCNA_00357at 374.038 kb on + strand, within CCNA_00357at 374.057 kb on - strand, within CCNA_00357at 374.059 kb on + strand, within CCNA_00357at 374.066 kb on + strand, within CCNA_00357at 374.068 kb on + strand, within CCNA_00357at 374.116 kb on + strand, within CCNA_00357at 374.129 kb on + strand, within CCNA_00357at 374.143 kb on + strand, within CCNA_00357at 374.144 kb on + strand, within CCNA_00357at 374.162 kb on + strand, within CCNA_00357at 374.165 kb on + strand, within CCNA_00357at 374.173 kb on - strand, within CCNA_00357at 374.183 kb on - strand, within CCNA_00357at 374.194 kb on - strand, within CCNA_00357at 374.264 kb on + strand, within CCNA_00357at 374.281 kb on + strand, within CCNA_00357at 374.286 kb on + strand, within CCNA_00357at 374.354 kb on + strand, within CCNA_00357

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Spectinomycin 0.08 mg/ml
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371,641 - CCNA_00355 0.26 -0.8
371,678 + CCNA_00355 0.29 -0.5
371,712 + CCNA_00355 0.31 +0.5
371,743 - CCNA_00355 0.34 -0.2
371,768 + CCNA_00355 0.36 +0.6
371,778 + CCNA_00355 0.37 -0.8
371,786 + CCNA_00355 0.37 +0.7
371,844 - CCNA_00355 0.42 -1.1
371,854 - CCNA_00355 0.43 -0.3
371,896 + CCNA_00355 0.46 -0.9
371,898 + CCNA_00355 0.46 -1.4
371,906 - CCNA_00355 0.47 -0.3
371,906 - CCNA_00355 0.47 -1.7
371,931 + CCNA_00355 0.49 -0.0
371,931 + CCNA_00355 0.49 +0.3
371,931 + CCNA_00355 0.49 -0.8
371,931 + CCNA_00355 0.49 -0.2
371,936 + CCNA_00355 0.49 +1.0
371,939 - CCNA_00355 0.49 -2.1
371,944 - CCNA_00355 0.50 -1.4
371,946 + CCNA_00355 0.50 -0.3
371,946 + CCNA_00355 0.50 -1.5
371,954 - +3.5
371,954 - CCNA_00355 0.51 -0.8
371,954 - CCNA_00355 0.51 -0.7
371,971 + CCNA_00355 0.52 +0.8
371,971 + CCNA_00355 0.52 +1.2
371,971 + CCNA_00355 0.52 +0.8
371,971 + CCNA_00355 0.52 +0.5
371,971 + CCNA_00355 0.52 -0.1
371,971 + CCNA_00355 0.52 +1.0
371,971 + CCNA_00355 0.52 -0.2
371,979 - CCNA_00355 0.53 -0.9
371,979 - CCNA_00355 0.53 -0.1
371,979 - CCNA_00355 0.53 +0.7
371,989 - CCNA_00355 0.53 +0.0
372,001 + CCNA_00355 0.54 -0.5
372,004 - CCNA_00355 0.55 -1.2
372,009 - CCNA_00355 0.55 -1.1
372,009 - CCNA_00355 0.55 -0.3
372,009 - CCNA_00355 0.55 -2.6
372,011 + CCNA_00355 0.55 -0.4
372,011 + CCNA_00355 0.55 -0.1
372,023 + CCNA_00355 0.56 +0.5
372,024 - CCNA_00355 0.56 +1.9
372,024 - CCNA_00355 0.56 -0.8
372,024 - CCNA_00355 0.56 +0.3
372,031 - CCNA_00355 0.57 -1.9
372,046 - CCNA_00355 0.58 -0.9
372,234 + CCNA_00355 0.73 +1.0
372,240 - CCNA_00355 0.74 +1.2
372,247 + CCNA_00355 0.74 -0.4
372,257 + CCNA_00355 0.75 +1.3
372,265 - CCNA_00355 0.76 +0.1
372,270 - CCNA_00355 0.76 -0.4
372,287 + CCNA_00355 0.77 +0.5
372,295 - CCNA_00355 0.78 -0.2
372,302 + CCNA_00355 0.79 +0.8
372,302 + CCNA_00355 0.79 +0.4
372,302 + CCNA_00355 0.79 +1.2
372,302 + CCNA_00355 0.79 +0.5
372,310 - CCNA_00355 0.79 -1.0
372,310 - CCNA_00355 0.79 -0.3
372,315 - CCNA_00355 0.80 +0.2
372,322 + CCNA_00355 0.80 -1.4
372,332 + CCNA_00355 0.81 +0.8
372,342 + CCNA_00355 0.82 -1.1
372,342 + CCNA_00355 0.82 +0.2
372,342 + CCNA_00355 0.82 -1.6
372,347 + CCNA_00355 0.82 +0.9
372,360 - CCNA_00355 0.83 +0.3
372,362 + CCNA_00355 0.83 +0.1
372,365 - CCNA_00355 0.84 -0.2
372,412 + CCNA_00355 0.87 -1.2
372,412 + CCNA_00355 0.87 +0.4
372,412 + CCNA_00355 0.87 -1.9
372,412 + CCNA_00355 0.87 +0.2
372,412 + CCNA_00355 0.87 +0.5
372,412 + CCNA_00355 0.87 +0.5
372,412 + CCNA_00355 0.87 -0.7
372,420 - CCNA_00355 0.88 -0.0
372,420 - CCNA_00355 0.88 -1.9
372,420 - CCNA_00355 0.88 +1.9
372,435 - CCNA_00355 0.89 +1.2
372,437 + CCNA_00355 0.89 +0.2
372,437 + CCNA_00355 0.89 +0.2
372,440 - CCNA_00355 0.90 +1.0
372,482 + -1.8
372,502 + -1.3
372,525 - -1.0
372,618 + +1.0
372,718 + CCNA_00356 0.10 +0.6
372,778 + CCNA_00356 0.18 +0.2
372,864 + CCNA_00356 0.30 +2.9
372,872 + CCNA_00356 0.31 +0.5
372,880 - CCNA_00356 0.32 -1.4
372,895 + CCNA_00356 0.34 +0.6
372,972 + CCNA_00356 0.44 -0.7
372,977 + CCNA_00356 0.44 -0.8
372,990 - CCNA_00356 0.46 +0.5
372,996 + CCNA_00356 0.47 +0.5
373,004 - CCNA_00356 0.48 -0.7
373,027 - CCNA_00356 0.51 -2.8
373,032 + CCNA_00356 0.52 +1.7
373,040 + CCNA_00356 0.53 +1.7
373,043 - CCNA_00356 0.53 -2.1
373,079 + CCNA_00356 0.58 +0.0
373,087 - CCNA_00356 0.59 -0.3
373,118 - CCNA_00356 0.63 -0.1
373,156 + CCNA_00356 0.68 +0.8
373,160 - CCNA_00356 0.68 +1.3
373,162 - CCNA_00356 0.68 +1.2
373,172 + CCNA_00356 0.70 -1.5
373,187 + CCNA_00356 0.72 -2.5
373,190 - CCNA_00356 0.72 -2.2
373,192 + CCNA_00356 0.72 -0.2
373,200 - CCNA_00356 0.73 -0.8
373,290 + CCNA_00356 0.85 -0.2
373,321 + CCNA_00356 0.89 +1.0
373,331 + -0.0
373,418 + -1.4
373,418 + -2.1
373,418 + +1.0
373,418 + -0.7
373,418 + +0.6
373,418 + +0.4
373,426 - -0.0
373,426 - +0.1
373,426 - +0.9
373,449 - +1.3
373,458 + -0.2
373,458 + -0.5
373,458 + -0.6
373,458 + +0.1
373,458 + -0.0
373,458 + -0.1
373,458 + +1.9
373,458 + -0.3
373,458 + +0.1
373,458 + +0.2
373,466 - -1.2
373,466 - +0.5
373,478 - -0.7
373,478 - -1.2
373,497 + +0.8
373,499 + +0.2
373,499 + -0.2
373,515 - -0.2
373,525 + -0.6
373,525 + +0.3
373,525 + +0.3
373,533 - -0.1
373,533 - -0.6
373,552 + -0.5
373,562 + +0.0
373,597 + +1.7
373,605 - -0.4
373,610 + -1.0
373,664 + CCNA_00357 0.11 +0.8
373,671 - CCNA_00357 0.11 -0.8
373,687 + CCNA_00357 0.12 +0.1
373,696 - CCNA_00357 0.13 -0.1
373,712 + CCNA_00357 0.14 +1.3
373,738 + CCNA_00357 0.16 +0.8
373,738 + CCNA_00357 0.16 +0.7
373,746 - CCNA_00357 0.16 +1.0
373,788 + CCNA_00357 0.19 +0.1
373,830 - CCNA_00357 0.22 -1.5
373,874 + CCNA_00357 0.25 -0.5
373,877 - CCNA_00357 0.26 +0.1
373,877 - CCNA_00357 0.26 +0.1
373,879 + CCNA_00357 0.26 +0.1
373,879 + CCNA_00357 0.26 -0.1
373,898 + CCNA_00357 0.27 -1.3
373,902 - CCNA_00357 0.27 -2.1
373,906 - CCNA_00357 0.28 -2.3
373,906 - CCNA_00357 0.28 -1.3
373,912 - CCNA_00357 0.28 -0.7
373,925 + CCNA_00357 0.29 +0.4
373,928 - CCNA_00357 0.29 -0.5
373,970 - CCNA_00357 0.32 -1.8
373,996 + CCNA_00357 0.34 +0.5
374,011 - CCNA_00357 0.35 -1.8
374,012 - CCNA_00357 0.35 +0.4
374,038 + CCNA_00357 0.37 -0.3
374,057 - CCNA_00357 0.38 +0.3
374,059 + CCNA_00357 0.38 +0.2
374,066 + CCNA_00357 0.39 -1.1
374,068 + CCNA_00357 0.39 +0.3
374,116 + CCNA_00357 0.42 +0.8
374,129 + CCNA_00357 0.43 +1.9
374,143 + CCNA_00357 0.44 +0.3
374,144 + CCNA_00357 0.44 -0.3
374,162 + CCNA_00357 0.46 -1.1
374,165 + CCNA_00357 0.46 +1.1
374,173 - CCNA_00357 0.46 -0.1
374,183 - CCNA_00357 0.47 -1.0
374,194 - CCNA_00357 0.48 -1.3
374,264 + CCNA_00357 0.53 +0.4
374,281 + CCNA_00357 0.54 -0.9
374,286 + CCNA_00357 0.54 +1.1
374,354 + CCNA_00357 0.59 -0.5

Or see this region's nucleotide sequence